The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	1155054	1170894	2913597		Staphylococcus_phage(92.31%)	17	NA	NA
WP_096809045.1|1155054_1156443_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	60.1	1.1e-167
WP_096809047.1|1156456_1157461_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.6	2.3e-87
WP_096809049.1|1157457_1157694_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	73.5	1.0e-30
WP_096809051.1|1157756_1158239_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	55.6	2.6e-44
WP_096811205.1|1158246_1159014_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	68.2	1.3e-95
WP_096809053.1|1160994_1162584_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.7e-260
WP_096809055.1|1162963_1164160_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.1	4.1e-192
WP_096809057.1|1164255_1165164_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.1	4.2e-88
WP_096809059.1|1165459_1166296_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	70.4	1.3e-112
WP_096809060.1|1166376_1166733_-	CrcB family protein	NA	NA	NA	NA	NA
WP_096809062.1|1166729_1167095_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	58.7	2.4e-34
WP_096823780.1|1167155_1167461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096809065.1|1167748_1168462_+	transaldolase	NA	E3SKN5	Synechococcus_phage	34.4	4.2e-19
WP_096809067.1|1168758_1169391_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_096809068.1|1169525_1169975_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	46.1	6.3e-21
WP_096809071.1|1169982_1170405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096809072.1|1170420_1170894_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.3	7.9e-22
>prophage 2
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	1173968	1180735	2913597		Staphylococcus_phage(100.0%)	6	NA	NA
WP_096809078.1|1173968_1175450_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	67.3	1.5e-13
WP_096809080.1|1176132_1177176_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.7	6.2e-128
WP_096809082.1|1177182_1177815_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.0	2.0e-68
WP_096809084.1|1177825_1179007_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	71.8	1.7e-166
WP_096809086.1|1179018_1179477_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	1.5e-57
WP_096809088.1|1179733_1180735_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	65.8	3.4e-123
>prophage 3
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	1184025	1191725	2913597	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_096809097.1|1184025_1184586_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	68.1	8.3e-71
WP_096809098.1|1184582_1185536_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	8.6e-68
WP_096809100.1|1185645_1186815_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	76.9	1.1e-165
WP_096809102.1|1187202_1189617_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	86.2	0.0e+00
WP_096809103.1|1189638_1189950_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	3.7e-36
WP_096809105.1|1190465_1191725_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	74.0	4.2e-38
>prophage 4
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	1320617	1329722	2913597	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_096809312.1|1320617_1321619_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	5.8e-06
WP_096809314.1|1321621_1322647_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_096809316.1|1322667_1323807_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	7.1e-85
WP_019468514.1|1323825_1324086_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	4.3e-06
WP_096809318.1|1324404_1326681_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.9	6.5e-29
WP_096809320.1|1326911_1329188_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.4e-69
WP_096809322.1|1329203_1329722_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.9	3.9e-30
>prophage 5
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	1644433	1681642	2913597	tail,terminase,capsid,integrase	uncultured_Caudovirales_phage(42.31%)	51	1662901:1662916	1684232:1684247
WP_096823819.1|1644433_1645918_-|tail	phage tail protein	tail	A0A2H4J1X6	uncultured_Caudovirales_phage	44.8	7.5e-111
WP_096823820.1|1645932_1651263_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1W6JQA9	Staphylococcus_phage	55.8	3.7e-152
WP_096823821.1|1651302_1651578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823822.1|1651637_1652150_-	hypothetical protein	NA	A0A2H4J2E6	uncultured_Caudovirales_phage	30.9	1.4e-11
WP_096823823.1|1652244_1653198_-	Ig domain-containing protein	NA	A0A2H4J7F5	uncultured_Caudovirales_phage	44.0	1.8e-28
WP_096823824.1|1653235_1653646_-|capsid	minor capsid protein	capsid	M4ZR34	Bacillus_phage	25.8	9.9e-05
WP_096823825.1|1653648_1654128_-	HK97 gp10 family phage protein	NA	A0A1U9WQQ7	Geobacillus_phage	41.3	4.4e-20
WP_096823826.1|1654117_1654462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823827.1|1654458_1654839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823828.1|1654849_1655137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823829.1|1656266_1656635_-	hypothetical protein	NA	A0A2H4J5H4	uncultured_Caudovirales_phage	42.3	2.8e-19
WP_096823830.1|1656638_1657280_-	hypothetical protein	NA	U3PIU5	Lactobacillus_phage	37.4	1.3e-06
WP_096823831.1|1657536_1657791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823832.1|1657783_1659670_-|capsid	capsid protein	capsid	A0A2H4J2F6	uncultured_Caudovirales_phage	38.6	2.0e-55
WP_096823833.1|1659679_1661398_-	hypothetical protein	NA	A0A2H4J9U4	uncultured_Caudovirales_phage	46.1	1.4e-124
WP_096823834.1|1661451_1662846_-|terminase	phage terminase large subunit	terminase	A0A2H4J7G6	uncultured_Caudovirales_phage	57.5	4.4e-161
WP_096823835.1|1662842_1663307_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	60.0	5.5e-36
1662901:1662916	attL	AAATCAATTTTTTGTT	NA	NA	NA	NA
WP_096823836.1|1663508_1663958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823837.1|1663984_1664467_-	Holliday junction resolvase RecU	NA	A0A1B1P798	Bacillus_phage	38.7	7.5e-20
WP_096823838.1|1664459_1664702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823839.1|1665648_1665846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823840.1|1666194_1666653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823841.1|1666871_1667417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823842.1|1667430_1667739_-	helix-turn-helix transcriptional regulator	NA	A0A1C8E9A4	Bacillus_phage	43.4	2.9e-09
WP_096823843.1|1667770_1667962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823844.1|1667974_1668175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823845.1|1668171_1668438_-	hypothetical protein	NA	A0A2H4J9D4	uncultured_Caudovirales_phage	48.3	7.1e-20
WP_096823846.1|1668430_1668622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823847.1|1668756_1668885_-	hypothetical protein	NA	A0A2H4J5Z8	uncultured_Caudovirales_phage	70.7	6.0e-09
WP_096823848.1|1669306_1669690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823849.1|1669701_1670199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823850.1|1670249_1670747_-	single-stranded DNA-binding protein	NA	A0A1J0MFL8	Staphylococcus_phage	47.3	9.8e-31
WP_096823851.1|1670739_1671141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823852.1|1671219_1671462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823853.1|1671455_1672241_-	ATP-binding protein	NA	A0A1J0MFK2	Staphylococcus_phage	59.4	3.0e-82
WP_096823854.1|1672252_1673032_-	DnaD domain protein	NA	A0A2H4IYS0	uncultured_Caudovirales_phage	67.3	3.6e-32
WP_096823855.1|1673067_1673313_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_096823856.1|1673318_1673570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157774144.1|1673574_1673724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823857.1|1673725_1674541_-	recombinase RecT	NA	S6AVW6	Thermus_phage	43.6	1.3e-48
WP_096823858.1|1674661_1675624_-	hypothetical protein	NA	A0A0A7S0N7	Clostridium_phage	38.9	1.3e-55
WP_096823860.1|1676087_1676321_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_096823861.1|1676565_1676808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823862.1|1676869_1677049_+	YegP family protein	NA	NA	NA	NA	NA
WP_096823863.1|1677212_1677974_-	Rha family transcriptional regulator	NA	A0A141VTQ8	Staphylococcus_phage	81.8	2.0e-115
WP_002512332.1|1677989_1678181_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	84.1	1.7e-20
WP_096823864.1|1678431_1678785_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	48.6	1.8e-18
WP_096823865.1|1678799_1679462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823866.1|1679689_1680043_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	33.3	2.0e-06
WP_096823867.1|1680104_1680557_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_096823868.1|1680556_1681642_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	35.1	6.6e-56
1684232:1684247	attR	AACAAAAAATTGATTT	NA	NA	NA	NA
>prophage 6
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	1832613	1890535	2913597	tRNA,terminase,capsid,portal,head,tail,plate,protease	Staphylococcus_phage(56.6%)	77	NA	NA
WP_096810179.1|1832613_1833546_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	28.9	4.0e-09
WP_096810184.1|1833538_1834027_-	peptide deformylase	NA	NA	NA	NA	NA
WP_096810190.1|1834738_1835428_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_157772548.1|1835649_1835793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810192.1|1835957_1837232_-	amidohydrolase	NA	NA	NA	NA	NA
WP_096810193.1|1837244_1838759_-	AbgT family transporter	NA	NA	NA	NA	NA
WP_096810195.1|1838820_1840263_-	amidohydrolase	NA	NA	NA	NA	NA
WP_096810197.1|1840694_1840892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810200.1|1841162_1841633_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_096810201.1|1841944_1842136_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	81.7	4.4e-24
WP_096810203.1|1842253_1842436_-	CsbD family protein	NA	NA	NA	NA	NA
WP_096811223.1|1843730_1844504_-	acetoin reductase	NA	NA	NA	NA	NA
WP_096810205.1|1845245_1845497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810207.1|1845468_1845855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810209.1|1845858_1846161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810211.1|1846387_1847998_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	5.8e-24
WP_096810213.1|1848958_1850350_-	CHAP domain-containing protein	NA	Q5NTY4	Staphylococcus_phage	33.1	2.3e-69
WP_096810215.1|1850361_1850673_-	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	66.7	4.2e-24
WP_096823882.1|1850725_1851037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096811224.1|1851073_1851277_-	XkdX family protein	NA	A0A2H4JI51	uncultured_Caudovirales_phage	68.9	2.8e-16
WP_096810219.1|1851497_1852736_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JGG5	uncultured_Caudovirales_phage	91.5	2.8e-159
WP_096810222.1|1852747_1854409_-	hypothetical protein	NA	A0A2H4JHN3	uncultured_Caudovirales_phage	93.3	1.2e-287
WP_096810223.1|1854405_1854768_-	hypothetical protein	NA	A0A2H4JCK2	uncultured_Caudovirales_phage	81.5	3.7e-19
WP_096810225.1|1854760_1856350_-	peptidase	NA	A0A2H4J5K5	uncultured_Caudovirales_phage	88.6	1.0e-278
WP_096810227.1|1856359_1857196_-|tail	phage tail family protein	tail	A0A1W6JQE9	Staphylococcus_phage	72.3	9.5e-95
WP_096823883.1|1857198_1864179_-|tail	phage tail tape measure protein	tail	Q8LTH9	Staphylococcus_phage	37.6	6.5e-197
WP_096810231.1|1864407_1864758_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	57.8	2.7e-27
WP_096810232.1|1864825_1865356_-	Ig domain-containing protein	NA	A0A1D6Z291	Staphylococcus_phage	60.1	2.0e-42
WP_096810234.1|1865452_1866082_-|tail	phage tail protein	tail	A0A2K9VBP7	Staphylococcus_phage	60.1	1.5e-60
WP_065865682.1|1866114_1866510_-	hypothetical protein	NA	A0A0K1LKC0	Staphylococcus_phage	63.4	1.6e-39
WP_046100246.1|1866506_1866932_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	58.9	3.0e-36
WP_046100245.1|1866924_1867260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046100244.1|1867265_1867553_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	56.7	1.1e-21
WP_046100243.1|1867625_1868792_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	80.1	1.2e-175
WP_046100242.1|1868804_1869572_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	69.3	4.3e-94
WP_096810238.1|1869522_1870794_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	76.6	4.2e-187
WP_017722722.1|1870797_1872492_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	75.1	1.4e-262
WP_017722721.1|1872481_1872790_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	79.4	6.7e-38
WP_082080590.1|1872889_1873249_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	59.6	1.2e-22
WP_065865684.1|1873773_1874241_-	hypothetical protein	NA	A0A1W6JPQ7	Staphylococcus_phage	70.5	5.7e-49
WP_096810241.1|1874562_1874697_-	transcriptional regulator	NA	A0A2H4JAX0	uncultured_Caudovirales_phage	68.3	1.7e-06
WP_157774145.1|1874698_1874938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810246.1|1874930_1875185_-	DUF1381 domain-containing protein	NA	A0A2H4J5P5	uncultured_Caudovirales_phage	61.5	4.2e-22
WP_096810248.1|1875185_1875419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810249.1|1875468_1875672_-	hypothetical protein	NA	A0A0D3MVJ6	Staphylococcus_phage	81.8	6.8e-23
WP_096810252.1|1875708_1876293_-	dUTP pyrophosphatase	NA	A0A1W6JQ84	Staphylococcus_phage	93.6	3.9e-87
WP_096810254.1|1876285_1876516_-	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	46.8	1.8e-08
WP_157772551.1|1876505_1876649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810256.1|1876649_1876928_-	hypothetical protein	NA	A0A1W6JQ72	Staphylococcus_phage	87.2	3.5e-30
WP_096810259.1|1876934_1877315_-	hypothetical protein	NA	Q4ZC86	Staphylococcus_virus	46.9	1.3e-22
WP_096810261.1|1877407_1877797_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	44.2	1.0e-19
WP_157774146.1|1877783_1877924_-	hypothetical protein	NA	A0A2H4JAZ1	uncultured_Caudovirales_phage	85.7	4.0e-14
WP_046466073.1|1877986_1878292_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	97.0	1.4e-48
WP_096811225.1|1878292_1878760_-	DUF3310 domain-containing protein	NA	A0A2H4J984	uncultured_Caudovirales_phage	54.6	5.2e-42
WP_096810265.1|1878835_1879183_-	hypothetical protein	NA	A0A1W6JQ77	Staphylococcus_phage	38.1	9.9e-14
WP_096810267.1|1879193_1879391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810269.1|1879395_1879800_-	DUF1064 domain-containing protein	NA	A0A2H4J5N5	uncultured_Caudovirales_phage	73.7	4.0e-51
WP_096823884.1|1879811_1880024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810275.1|1880191_1880965_-	ATP-binding protein	NA	A0A1W6JNQ7	Staphylococcus_phage	84.1	5.3e-108
WP_096810277.1|1880975_1881731_-	replication protein	NA	A0A1W6JQ30	Staphylococcus_phage	55.6	3.2e-49
WP_096823885.1|1881717_1882395_-	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	70.4	1.8e-91
WP_096810281.1|1882406_1882961_-	single-stranded DNA-binding protein	NA	Q9G027	Staphylococcus_virus	79.3	7.4e-80
WP_096810284.1|1883038_1883254_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_096811226.1|1883263_1883419_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	66.0	1.7e-13
WP_096810285.1|1883405_1883600_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	60.0	3.5e-08
WP_096810287.1|1883613_1884381_-	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	75.5	4.0e-108
WP_096810289.1|1884373_1884634_-	hypothetical protein	NA	U3PCY6	Staphylococcus_phage	96.5	2.1e-40
WP_157772552.1|1884695_1884872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810291.1|1884884_1885148_-	helix-turn-helix domain-containing protein	NA	B7T0G2	Staphylococcus_virus	57.6	3.5e-19
WP_096810293.1|1885237_1885549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810295.1|1885537_1885789_-	DUF2829 domain-containing protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	59.2	8.1e-18
WP_096810297.1|1885800_1886562_-	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	63.2	3.6e-77
WP_096810299.1|1886574_1886823_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	72.7	4.3e-27
WP_096810301.1|1886987_1887734_+	helix-turn-helix transcriptional regulator	NA	Q9G039	Staphylococcus_virus	55.4	1.2e-64
WP_096810304.1|1888011_1888791_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	55.9	3.7e-08
WP_157772553.1|1889234_1889405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810306.1|1889587_1890535_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	56.0	7.2e-91
>prophage 7
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	2021486	2029962	2913597		Synechococcus_phage(33.33%)	9	NA	NA
WP_096810420.1|2021486_2022053_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.1	4.2e-30
WP_096810421.1|2022055_2023084_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.8	4.3e-65
WP_096810422.1|2023076_2024564_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.9e-45
WP_096810423.1|2024542_2026732_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.9	1.8e-137
WP_096810424.1|2026724_2027396_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_096810425.1|2027395_2027656_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_096810426.1|2027658_2028360_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	41.2	8.9e-46
WP_096810427.1|2028359_2029493_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_096810428.1|2029479_2029962_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.0e-20
>prophage 8
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	2179274	2223144	2913597	terminase,portal,capsid,tail,plate,protease,integrase	Staphylococcus_phage(46.15%)	59	2183719:2183737	2230103:2230121
WP_096810547.1|2179274_2181008_-	CHAP domain-containing protein	NA	A0A1W6JQL2	Staphylococcus_phage	69.4	7.9e-245
WP_096810548.1|2181007_2181304_-	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	69.7	6.2e-25
WP_096810217.1|2181354_2181666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096811233.1|2181702_2181906_-	XkdX family protein	NA	A0A2H4JI51	uncultured_Caudovirales_phage	80.3	2.8e-21
WP_096823899.1|2182126_2183365_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JGG5	uncultured_Caudovirales_phage	90.5	1.2e-154
WP_096810550.1|2183376_2185038_-	hypothetical protein	NA	A0A2H4JHN3	uncultured_Caudovirales_phage	94.6	7.0e-291
2183719:2183737	attL	ATCATTCATTGTTAATTTA	NA	NA	NA	NA
WP_096823900.1|2185034_2185397_-	hypothetical protein	NA	A0A2H4JCK2	uncultured_Caudovirales_phage	79.6	4.8e-19
WP_096823901.1|2185389_2186976_-	peptidase	NA	A0A2H4J5K5	uncultured_Caudovirales_phage	72.2	2.9e-225
WP_096810553.1|2186985_2187822_-|tail	phage tail family protein	tail	A0A2H4J7E0	uncultured_Caudovirales_phage	56.9	7.8e-81
WP_096823902.1|2187835_2194819_-|tail	phage tail tape measure protein	tail	Q8LTH9	Staphylococcus_phage	36.7	2.1e-187
WP_096810557.1|2195047_2195398_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	56.0	4.6e-27
WP_096810558.1|2195465_2195996_-	Ig domain-containing protein	NA	A0A1D6Z291	Staphylococcus_phage	60.8	9.1e-43
WP_096810559.1|2196092_2196722_-|tail	phage tail protein	tail	A0A2K9VBP7	Staphylococcus_phage	59.0	2.8e-59
WP_065865682.1|2196755_2197151_-	hypothetical protein	NA	A0A0K1LKC0	Staphylococcus_phage	63.4	1.6e-39
WP_096810560.1|2197147_2197573_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	58.1	1.5e-35
WP_096810561.1|2197569_2197932_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	47.5	7.9e-22
WP_096810562.1|2197918_2198200_-	hypothetical protein	NA	A0A2H4J447	uncultured_Caudovirales_phage	51.1	2.7e-17
WP_096810563.1|2198295_2199495_-|capsid	phage major capsid protein	capsid	Q4ZD74	Staphylococcus_phage	46.1	6.8e-86
WP_096810564.1|2199507_2200236_-|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	54.0	3.4e-48
WP_096810565.1|2200198_2201383_-|portal	phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	47.6	3.9e-102
WP_096810566.1|2201398_2203069_-|terminase	terminase large subunit	terminase	A8AT95	Listeria_phage	60.2	1.7e-199
WP_096811234.1|2203065_2203407_-	hypothetical protein	NA	A0A2H4JAH7	uncultured_Caudovirales_phage	60.2	3.7e-29
WP_096810567.1|2203600_2203936_-	HNH endonuclease	NA	D2XR61	Bacillus_phage	55.5	3.2e-25
WP_096810568.1|2204167_2204593_-	hypothetical protein	NA	Q4ZD23	Staphylococcus_phage	53.9	2.3e-33
WP_096810569.1|2204651_2204900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810570.1|2204901_2205207_-	DUF5052 family protein	NA	S4UCP8	Listeria_phage	67.7	4.3e-29
WP_157772554.1|2205219_2205369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810571.1|2205369_2205600_-	DUF1381 domain-containing protein	NA	A0A2H4JGT2	uncultured_Caudovirales_phage	73.7	1.0e-19
WP_096823903.1|2205599_2205965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810249.1|2206014_2206218_-	hypothetical protein	NA	A0A0D3MVJ6	Staphylococcus_phage	81.8	6.8e-23
WP_096810252.1|2206254_2206839_-	dUTP pyrophosphatase	NA	A0A1W6JQ84	Staphylococcus_phage	93.6	3.9e-87
WP_096810573.1|2206831_2207062_-	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	44.2	5.9e-07
WP_096810574.1|2207051_2207297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810575.1|2207418_2207895_-	hypothetical protein	NA	A0A2H4JCS1	uncultured_Caudovirales_phage	56.9	6.7e-05
WP_096810576.1|2207901_2208291_-	hypothetical protein	NA	A0A286QNB5	Streptococcus_phage	37.5	5.7e-10
WP_096810577.1|2208383_2208791_-	hypothetical protein	NA	U3PBR0	Staphylococcus_phage	41.0	3.3e-16
WP_096810579.1|2208984_2209500_-	DUF3310 domain-containing protein	NA	A0A2H4JC86	uncultured_Caudovirales_phage	57.3	2.2e-65
WP_096810580.1|2209500_2209854_-	hypothetical protein	NA	A0A1W6JQ77	Staphylococcus_phage	74.1	4.5e-46
WP_096810581.1|2209855_2210044_-	hypothetical protein	NA	A0A1W6JQ89	Staphylococcus_phage	93.5	8.5e-28
WP_096810582.1|2210036_2210447_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1D6Z252	Staphylococcus_phage	71.7	7.5e-45
WP_096810583.1|2210457_2210676_-	hypothetical protein	NA	A0A1W6JPS2	Staphylococcus_phage	66.7	1.2e-22
WP_096810585.1|2210831_2211605_-	ATP-binding protein	NA	A0A1W6JP70	Staphylococcus_phage	83.2	1.1e-108
WP_096810586.1|2211615_2212383_-	DnaD domain protein	NA	A0A2H4JAS0	uncultured_Caudovirales_phage	66.7	7.2e-57
WP_096810587.1|2212369_2213050_-	hypothetical protein	NA	U3PDZ6	Staphylococcus_phage	92.8	3.8e-118
WP_096810588.1|2213078_2213513_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	72.1	1.2e-53
WP_096810589.1|2213512_2214163_-	single-stranded DNA-binding protein	NA	A0A2H4J5X9	uncultured_Caudovirales_phage	75.1	8.2e-86
WP_096810590.1|2214155_2214410_-	hypothetical protein	NA	A0A2H4J1Y9	uncultured_Caudovirales_phage	67.9	4.5e-24
WP_096810591.1|2214661_2214871_-	hypothetical protein	NA	A0A2H4J149	uncultured_Caudovirales_phage	47.8	3.3e-12
WP_096810592.1|2214934_2215204_+	hypothetical protein	NA	A0A1J0MFQ1	Staphylococcus_phage	79.8	3.5e-35
WP_096810593.1|2215334_2215586_-	DUF2829 domain-containing protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	59.2	1.1e-17
WP_096810594.1|2215597_2215807_-	pathogenicity island protein	NA	Q4ZCA9	Staphylococcus_virus	49.3	2.8e-08
WP_096810595.1|2215818_2216577_-	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	62.8	5.6e-78
WP_096810596.1|2216594_2216819_-	helix-turn-helix transcriptional regulator	NA	Q9MBT3	Staphylococcus_prophage	74.0	6.1e-25
WP_096810597.1|2216985_2217708_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	50.6	1.2e-58
WP_096810598.1|2217982_2218732_+	hypothetical protein	NA	Q4ZCY3	Staphylococcus_virus	53.4	9.6e-22
WP_096823904.1|2218794_2219853_+|integrase	site-specific integrase	integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	77.9	5.8e-158
WP_096810600.1|2219921_2221319_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_096810601.1|2221457_2221907_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_096810602.1|2221896_2223144_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	46.0	2.0e-109
2230103:2230121	attR	TAAATTAACAATGAATGAT	NA	NA	NA	NA
>prophage 9
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	2340003	2360311	2913597		uncultured_Caudovirales_phage(35.71%)	16	NA	NA
WP_096810698.1|2340003_2340804_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.3	6.0e-14
WP_096810699.1|2340800_2341760_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	52.0	3.6e-05
WP_096810700.1|2341749_2342718_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.5	6.8e-137
WP_096810701.1|2342955_2343924_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	93.5	4.1e-174
WP_096810702.1|2344161_2346267_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.0	0.0e+00
WP_096810703.1|2346229_2346628_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	73.5	2.8e-52
WP_096810704.1|2347331_2348219_+	DMT family transporter	NA	NA	NA	NA	NA
WP_096810705.1|2348232_2348733_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	4.1e-53
WP_096810706.1|2349149_2350664_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.4	1.8e-72
WP_096810707.1|2350964_2352473_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	33.6	6.1e-68
WP_096810708.1|2352610_2353552_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	25.5	1.1e-11
WP_096810709.1|2353742_2354291_-	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.2	6.5e-28
WP_096810710.1|2354519_2355575_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.9	5.5e-23
WP_096810711.1|2355768_2357283_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_096810712.1|2357279_2358242_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.4e-25
WP_096810713.1|2358532_2360311_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	38.5	9.1e-79
>prophage 10
NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2913597	2369227	2375302	2913597		Pandoravirus(16.67%)	8	NA	NA
WP_096823927.1|2369227_2370367_-	anthranilate synthase component I family protein	NA	S4VT78	Pandoravirus	34.6	4.4e-26
WP_096810722.1|2370350_2370944_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.0	6.6e-34
WP_096810723.1|2371190_2371862_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.2	1.7e-65
WP_096810724.1|2371863_2372289_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	25.2	6.4e-07
WP_096810725.1|2372281_2372998_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	45.4	2.5e-51
WP_096810726.1|2373242_2373836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810727.1|2373897_2374152_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_096810728.1|2374210_2375302_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.2	4.2e-58
>prophage 1
NZ_CP017462	Staphylococcus nepalensis strain JS1 plasmid pSNJS102, complete sequence	22471	1483	19537	22471	terminase	Staphylococcus_phage(50.0%)	40	NA	NA
WP_096810306.1|1483_2431_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	56.0	7.2e-91
WP_157772553.1|2613_2784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810304.1|3227_4007_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	55.9	3.7e-08
WP_096810301.1|4284_5031_-	helix-turn-helix transcriptional regulator	NA	Q9G039	Staphylococcus_virus	55.4	1.2e-64
WP_096810299.1|5195_5444_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	72.7	4.3e-27
WP_096810297.1|5456_6218_+	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	63.2	3.6e-77
WP_096810295.1|6229_6481_+	DUF2829 domain-containing protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	59.2	8.1e-18
WP_096810293.1|6469_6781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810291.1|6870_7134_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_157772552.1|7146_7323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810289.1|7384_7645_+	hypothetical protein	NA	U3PCY6	Staphylococcus_phage	96.5	2.1e-40
WP_096810287.1|7637_8405_+	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	75.5	4.0e-108
WP_096810285.1|8418_8613_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	60.0	3.5e-08
WP_096811226.1|8599_8755_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	66.0	1.7e-13
WP_096810284.1|8764_8980_-	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_096810281.1|9057_9612_+	single-stranded DNA-binding protein	NA	Q9G027	Staphylococcus_virus	79.3	7.4e-80
WP_096823885.1|9623_10301_+	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	70.4	1.8e-91
WP_096810277.1|10287_11043_+	replication protein	NA	A0A1W6JQ30	Staphylococcus_phage	55.6	3.2e-49
WP_096810275.1|11053_11827_+	ATP-binding protein	NA	A0A1W6JNQ7	Staphylococcus_phage	84.1	5.3e-108
WP_096823884.1|11994_12207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810269.1|12218_12623_+	DUF1064 domain-containing protein	NA	A0A2H4J5N5	uncultured_Caudovirales_phage	73.7	4.0e-51
WP_096810267.1|12627_12825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810265.1|12835_13183_+	hypothetical protein	NA	A0A1W6JQ77	Staphylococcus_phage	38.1	9.9e-14
WP_096811225.1|13258_13726_+	DUF3310 domain-containing protein	NA	A0A2H4J984	uncultured_Caudovirales_phage	54.6	5.2e-42
WP_046466073.1|13726_14032_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	97.0	1.4e-48
WP_157774146.1|14094_14235_+	hypothetical protein	NA	A0A2H4JAZ1	uncultured_Caudovirales_phage	85.7	4.0e-14
WP_096810261.1|14221_14611_+	hypothetical protein	NA	I1W655	Staphylococcus_phage	44.2	1.0e-19
WP_096810259.1|14703_15084_+	hypothetical protein	NA	Q4ZC86	Staphylococcus_virus	46.9	1.3e-22
WP_096810256.1|15090_15369_+	hypothetical protein	NA	A0A1W6JQ72	Staphylococcus_phage	87.2	3.5e-30
WP_157772551.1|15369_15513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810254.1|15502_15733_+	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	46.8	1.8e-08
WP_096810252.1|15725_16310_+	dUTP pyrophosphatase	NA	A0A1W6JQ84	Staphylococcus_phage	93.6	3.9e-87
WP_096810249.1|16346_16550_+	hypothetical protein	NA	A0A0D3MVJ6	Staphylococcus_phage	81.8	6.8e-23
WP_096810248.1|16599_16833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810246.1|16833_17088_+	DUF1381 domain-containing protein	NA	A0A2H4J5P5	uncultured_Caudovirales_phage	61.5	4.2e-22
WP_157774145.1|17080_17320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810241.1|17321_17456_+	transcriptional regulator	NA	A0A2H4JAX0	uncultured_Caudovirales_phage	68.3	1.7e-06
WP_065865684.1|17777_18245_+	hypothetical protein	NA	A0A1W6JPQ7	Staphylococcus_phage	70.5	5.7e-49
WP_082080590.1|18769_19129_+	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	59.6	1.2e-22
WP_017722721.1|19228_19537_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	79.4	6.7e-38
