The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	27282	78584	4103236	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	164892	303017	4103236	tRNA,protease,transposase	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929664.1|176365_176893_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176984_177800_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181334_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189528_189975_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193099_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|195455_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197375_198476_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198557_198932_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198991_201856_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205632_206583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207167_208208_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208213_208993_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211221_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219051_221895_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225618_226314_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226330_227743_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227855_229286_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229327_231241_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231559_232126_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232216_233218_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233332_234283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234369_235320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235316_236267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236365_237163_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238112_238523_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239544_240288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240331_241375_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241545_243648_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245058_246015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246033_246525_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246521_247877_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247877_248576_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248572_249274_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249526_250576_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250681_251623_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251619_253509_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253595_254234_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254376_255762_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255692_256229_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256380_257772_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257788_258769_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258904_259888_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259952_260852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260958_262713_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262720_263845_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263858_264839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265569_266520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267079_267625_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267750_269328_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269343_270498_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270511_270637_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270633_272385_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272381_274061_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274123_274672_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275814_276093_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277136_278087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278073_278289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279651_280263_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280421_281270_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281295_282678_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283523_283982_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284836_285973_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285969_286920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287018_287645_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287667_288594_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288602_290189_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290185_291190_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291389_292250_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292281_293283_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293353_294163_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294240_296100_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296228_297431_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297544_298426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299928_300489_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300548_301499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301690_301978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302066_303017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	390853	448361	4103236	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390853_391804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391940_392858_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392854_393103_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393099_394305_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394377_395373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395395_396616_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396612_397257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398987_399797_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400101_401055_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401152_402136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402062_402764_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402812_403583_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403579_404758_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404925_406632_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406628_407525_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407565_409155_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409204_410197_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410265_410865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411325_412306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412381_413332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413420_414335_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414331_414991_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415080_416004_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416009_416465_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416461_417565_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417523_417793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417752_419372_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419368_420427_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420556_421051_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421143_422121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422316_423522_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423518_425030_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425045_426359_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426549_426729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427138_427873_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430317_431268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431399_431798_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432208_432679_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432767_433112_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433211_434612_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436400_436919_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437029_437785_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437980_439213_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439205_439991_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440057_441029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441039_442017_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442142_443315_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443341_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444435_445629_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447410_448361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	590414	651603	4103236	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590414_591365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591840_592731_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592727_593549_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593747_594239_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594257_595331_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595377_596481_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596556_597177_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597197_597707_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597761_598013_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598076_599210_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599217_599604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599600_602120_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602548_602887_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602883_603390_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603451_604252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604362_605304_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605397_606933_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608612_610463_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610466_611300_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611299_612241_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612492_613464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613605_615894_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616199_617108_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617162_618128_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618202_619864_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619935_620646_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620794_621745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622443_622827_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622884_623487_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623504_623906_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624021_624933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624929_625511_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626305_627040_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627080_628130_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628277_628856_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629242_630220_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630313_634708_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634908_635757_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635915_636728_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636783_637734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637832_638633_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638694_639078_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639089_640442_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640729_641059_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641061_641811_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641993_642914_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642960_643173_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643195_643618_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643634_644735_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644831_646349_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646424_647264_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647285_648158_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648248_649343_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649636_650587_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650661_651603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	656927	703118	4103236	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656927_657953_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657993_658233_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658302_659892_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659891_660440_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660520_661093_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661111_662023_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662096_663065_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663187_664261_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664265_666086_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666162_667113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667201_667537_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667670_668321_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668342_669761_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669830_670586_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670554_671313_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671323_672205_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672221_672929_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672931_673690_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673899_675642_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675634_676159_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676198_676993_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677160_678234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678332_679283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679534_679741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679812_680424_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680978_681230_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681222_681912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682168_683119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683758_684244_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684230_685508_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685510_686929_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686957_688013_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688018_688261_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688383_688986_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689414_690365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691039_691291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691353_691836_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691849_692038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692037_692433_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692429_692828_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692824_693247_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693254_693755_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694009_694528_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694537_694867_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694884_695175_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695200_697813_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697822_698182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698249_698783_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698779_699169_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699161_703118_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 6
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	709284	779360	4103236	tRNA,transposase	Planktothrix_phage(40.0%)	58	NA	NA
WP_003814636.1|709284_711015_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711067_711496_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711498_712179_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712178_712637_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712673_713648_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713664_714981_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715012_715510_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715596_716286_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716285_717335_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717331_718126_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718294_718645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718620_719178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720307_721258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723395_724625_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724627_726070_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726174_727320_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727351_728149_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728173_729733_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729729_732102_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732211_733315_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733314_734007_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734150_734852_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734836_735214_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735945_736896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737055_737928_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738268_738487_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738526_739906_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739947_741345_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741384_743037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743040_743925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743924_744866_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744944_746564_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746730_747546_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747613_748183_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748183_749134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749788_750886_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750919_752185_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929982.1|753535_754126_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754141_756586_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756705_757677_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757808_758333_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758292_759243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759464_761660_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761732_762140_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762262_763213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|763328_763772_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|763834_764629_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|764794_765931_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|766001_767135_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|767284_767545_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|767578_767890_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|768314_769463_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|769577_770543_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|770811_771678_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|771808_773857_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|773874_775872_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|775906_777244_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_023853308.1|777506_779360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	885802	953778	4103236	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885802_886819_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887015_887999_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889597_890986_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891016_892006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892116_893349_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893630_894431_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894453_896685_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897472_897919_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897940_898687_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898830_899808_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900441_901053_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901046_902264_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902404_903355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903351_904071_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904191_906351_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906441_906711_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906799_907006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907004_907532_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907550_908330_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908497_909514_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909586_910078_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910088_911804_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912967_913918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913914_915747_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916145_916805_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917332_918013_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918294_919011_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919025_920327_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922471_925360_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925583_926936_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926964_927486_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927482_928937_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928971_929220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929325_930201_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930226_931282_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931294_932086_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932118_933489_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934665_935616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935668_935890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936049_936262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936381_937500_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937596_937812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938005_938257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938369_939320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939316_939700_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939754_941569_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941718_942546_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942591_943572_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943568_943781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943777_944959_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945122_945857_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945858_948471_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948606_950520_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951135_951546_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951643_952729_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952827_953778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	1046285	1095898	4103236	holin,tRNA,transposase	uncultured_Mediterranean_phage(50.0%)	41	NA	NA
WP_005012067.1|1046285_1047236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047534_1048272_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048707_1049031_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049065_1049626_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049746_1050622_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050634_1051582_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051683_1051977_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052003_1054061_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054075_1054576_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054649_1056356_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057219_1058272_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058324_1058714_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058722_1059355_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059454_1060471_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061301_1062309_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062305_1063949_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063945_1064833_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064973_1065447_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065436_1066459_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066455_1067883_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068820_1069837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070169_1071105_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071154_1073035_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073101_1073446_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073590_1074727_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074723_1075797_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075954_1077391_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077481_1078123_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078458_1079475_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082621_1084043_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084306_1085023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085107_1085425_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085465_1085879_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085880_1086240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086282_1087827_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087910_1088741_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088775_1089930_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089972_1090845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090961_1093250_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094456_1094921_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094947_1095898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	1114874	1196881	4103236	tRNA,transposase	Catovirus(22.22%)	59	NA	NA
WP_010930178.1|1114874_1115888_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115884_1116835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116947_1117406_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117442_1118756_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118773_1119145_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119141_1120605_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120745_1121474_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121455_1124305_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124517_1125468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125635_1126460_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126459_1127338_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128242_1129358_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129386_1130181_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130177_1132043_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132121_1132754_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132750_1133053_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133095_1134616_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1134622_1135378_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1135407_1136512_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1136614_1138315_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1138296_1139274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1139283_1140564_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1140556_1141252_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1141285_1142113_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1142394_1145625_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1146360_1150287_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1152186_1153983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153982_1154951_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155020_1155866_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155933_1156488_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156534_1157485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157583_1158216_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158379_1160662_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160816_1163513_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163638_1164127_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166537_1169408_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169453_1170668_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170897_1172325_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172422_1173514_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173526_1174285_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174372_1175275_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175271_1176222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176351_1177335_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177389_1178112_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179589_1180945_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181025_1183401_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183565_1185641_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185702_1186497_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186604_1187567_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187554_1188310_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188417_1190055_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190122_1190860_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190962_1191538_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191710_1192247_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192279_1192594_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192609_1193455_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193493_1194873_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194950_1195832_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195930_1196881_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	1316903	1385390	4103236	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316903_1317854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318622_1319261_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320150_1320597_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320678_1321380_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321380_1322148_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322144_1323383_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323382_1324309_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324411_1325527_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325542_1326493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326846_1327428_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327424_1328258_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328468_1329782_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329958_1330840_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330859_1331711_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331763_1332852_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332962_1334090_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334324_1334936_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1335034_1335985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336206_1336584_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336731_1337229_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337225_1337753_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337886_1338702_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338714_1339896_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339943_1340837_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340963_1341434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341559_1342387_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342415_1343192_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343188_1343464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343478_1343943_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343954_1344656_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344765_1345266_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345348_1346527_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348154_1348490_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348677_1350126_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350183_1350528_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350634_1351174_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351266_1352217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1352315_1352723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352955_1353387_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353568_1353973_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355209_1355533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355535_1356423_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356455_1356881_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356952_1357306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357545_1358052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358090_1359422_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359481_1360297_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360293_1361148_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364210_1366754_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368120_1369875_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369871_1371992_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371996_1374192_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374188_1377530_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380332_1381283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381348_1381528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381644_1382400_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382386_1383532_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384439_1385390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	1445881	1501369	4103236	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445881_1446832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448033_1448480_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448472_1449948_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449944_1450700_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450692_1451703_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451692_1453369_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453681_1454014_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454027_1454423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454432_1454759_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1454755_1455082_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455008_1456031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456027_1456378_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456425_1456854_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456861_1458235_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458375_1458753_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459015_1460323_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460383_1461214_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461210_1461699_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461740_1463261_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463304_1463781_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464584_1467182_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467211_1468033_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468759_1469509_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469692_1470571_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470668_1471385_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471399_1471960_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472126_1472891_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472910_1473768_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473764_1474964_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475003_1476338_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476390_1478727_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478852_1479416_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479424_1480516_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480587_1481043_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481043_1481838_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481834_1483016_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483002_1483608_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483604_1484378_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484389_1485217_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485378_1487742_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487809_1488529_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488652_1489078_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489112_1490063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490180_1491107_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491172_1492330_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492310_1492778_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492925_1493876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493892_1494327_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494316_1494667_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494863_1496018_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496014_1497187_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497234_1498128_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498173_1498611_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498670_1499360_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1499369_1500320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500418_1501369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	1596064	1664150	4103236	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1596064_1596553_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1596670_1597249_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1597354_1597723_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1597821_1598772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1598778_1599891_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1600577_1601780_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1601983_1604644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1604656_1608061_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1608728_1610954_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1611000_1611327_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1611377_1611986_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1612084_1613035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1613104_1613869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1613865_1614402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1614568_1615420_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1615479_1616106_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1616102_1617053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1617151_1618264_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1618253_1619255_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1619360_1620872_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1620868_1622173_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1622284_1622845_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1623112_1623667_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1624122_1624338_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1624592_1627190_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1627186_1628374_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1629032_1629647_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1629735_1630857_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1630874_1631780_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1632672_1633623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1633804_1634557_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1634625_1635285_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1635281_1636010_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1636022_1638302_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1638326_1638530_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1638571_1639204_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1639339_1640257_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1640253_1640967_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1641204_1641975_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1641979_1642579_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1642823_1644314_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1644372_1644657_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1645222_1646149_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1646285_1647026_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1647192_1648569_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1648750_1649656_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1651307_1653110_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1653227_1653878_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1653976_1654927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1654948_1656169_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1656354_1657767_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1657830_1658898_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1658897_1660385_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1660394_1661339_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1661498_1662197_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1662274_1663180_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1663199_1664150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	1700099	1755690	4103236	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1700099_1701050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1701108_1701882_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1701874_1703431_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1703427_1704378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1705704_1706307_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1706546_1707248_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1707241_1708024_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1708208_1709159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1709257_1709995_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1710184_1710943_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1710989_1711979_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1712156_1713125_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1714664_1715633_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1715641_1716583_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1717056_1718067_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1718057_1719572_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1719568_1720915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1720917_1721952_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1722001_1723627_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1724179_1725130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1725234_1726182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1726235_1728050_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1728042_1728717_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1728846_1731921_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1731934_1732234_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1732548_1733172_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1733415_1734285_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1734262_1735207_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1735292_1736219_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1736331_1737111_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1737101_1738298_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1738328_1739279_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1739500_1740190_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1740254_1741010_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1741061_1742054_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1742063_1743017_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1743132_1744095_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1745496_1745925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1745921_1746872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1747165_1747888_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1748326_1749514_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1749517_1749868_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1751617_1752589_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1752602_1753316_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1753320_1754238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1754344_1754641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1754739_1755690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	2197625	2263174	4103236	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2197625_2198576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2198776_2199586_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2199710_2200661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2200657_2201551_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2201675_2201870_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2201869_2202211_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2202220_2204083_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2204212_2204725_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2204727_2205051_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2205052_2205463_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2205500_2206712_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2206729_2207242_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2207457_2207949_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2208201_2210238_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2210315_2211518_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2211646_2212297_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2213854_2214805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2215375_2215588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2215605_2216337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2216371_2217013_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2217005_2217674_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2219886_2220663_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2220684_2221842_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2221838_2222270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2222266_2223064_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2223083_2223485_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2223551_2224523_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2224588_2225812_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2226039_2226990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2227113_2229567_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2229755_2231060_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2231164_2231818_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2231820_2233131_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2233309_2233888_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2233999_2234200_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2234545_2235112_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2235195_2235399_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2235705_2236026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2236067_2236349_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2236423_2237680_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2238062_2238392_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2239962_2240784_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2240783_2241923_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2241929_2242826_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2242840_2244748_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2245107_2247720_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2247772_2250073_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2250069_2251278_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2251539_2251914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2251910_2252861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2252959_2254954_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2255013_2255979_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2255968_2258830_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2258832_2259339_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2259443_2260652_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2260653_2261592_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2261753_2262227_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2262223_2263174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	2684911	2725580	4103236	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684911_2685862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685972_2686155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686254_2686851_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687034_2688126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688625_2689036_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689094_2689424_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689441_2691859_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691871_2692894_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692968_2693328_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693343_2693541_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693876_2694827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695021_2695471_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695467_2696418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696528_2697977_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698091_2698337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698476_2699427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699671_2700385_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700507_2700735_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701029_2701668_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701776_2702811_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702807_2703758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704173_2704698_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704701_2704971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705169_2706231_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706314_2707949_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707950_2708754_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708782_2709742_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709745_2711260_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711296_2712301_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712732_2713203_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713238_2713850_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713880_2714504_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714584_2716117_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716151_2717369_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717436_2718468_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718464_2719634_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719627_2720308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720469_2721312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721474_2722446_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722617_2723496_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723518_2724589_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724629_2725580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	2781045	2853915	4103236	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781045_2781462_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781572_2782205_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782233_2782677_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782698_2783790_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783844_2784645_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784780_2785401_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785540_2786014_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787153_2788104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788100_2795762_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796002_2800049_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800361_2800943_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800939_2802238_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802317_2803346_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803606_2804557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804553_2805504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805820_2806426_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806479_2807793_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807867_2808338_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808337_2809126_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809136_2810789_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810876_2811827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812988_2813495_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813491_2814256_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814271_2814556_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814620_2815610_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815781_2816711_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816682_2817369_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817402_2817948_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2817992_2819258_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819254_2820157_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821338_2822283_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822377_2823895_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823936_2825565_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825672_2826554_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829666_2830041_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830065_2830404_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830447_2832082_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832120_2833467_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833574_2834996_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835065_2835650_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835752_2836703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836837_2837944_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837954_2839052_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839196_2840402_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840408_2840930_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840926_2841409_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841414_2841666_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841646_2842132_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842267_2845729_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845746_2846631_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846640_2847072_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847318_2847822_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847899_2849300_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849374_2850250_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850246_2851254_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851721_2852027_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852117_2852708_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852898_2853915_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	2857058	2923868	4103236	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_076879566.1|2857058_2858009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858107_2859058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859054_2859849_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859880_2860585_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860659_2861460_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861456_2861864_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861860_2862502_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862494_2864495_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865755_2867087_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867083_2868034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869740_2870007_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870714_2871053_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875605_2876208_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876304_2877594_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877651_2878383_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878379_2879183_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879179_2880268_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880264_2881194_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881342_2882488_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882509_2883460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883790_2887612_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887768_2888437_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888441_2890115_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890133_2891453_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891457_2893773_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893828_2895997_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2895993_2901174_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901272_2901587_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901814_2902060_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902154_2902673_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902772_2903978_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904093_2905491_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905607_2906186_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906258_2907650_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907817_2908768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909048_2909669_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909665_2910079_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910075_2911119_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911174_2911363_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911372_2912137_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912227_2912884_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912975_2913734_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913759_2915361_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915561_2916566_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916666_2916930_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917047_2917824_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918414_2919365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921748_2922861_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2922917_2923868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	2954254	2997945	4103236	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2954254_2955205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2955325_2956222_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958499_2960725_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960889_2961978_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961934_2962588_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962635_2963433_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963964_2964915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2964995_2966144_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966200_2967151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967249_2967555_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967583_2968018_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968019_2969264_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969260_2969971_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969985_2970897_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971259_2971664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971660_2972119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972125_2973034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973030_2973897_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973883_2974711_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974721_2975849_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976926_2978165_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978206_2979469_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979475_2980228_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980279_2980465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980740_2981205_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981236_2981896_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982040_2984149_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984145_2985096_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985199_2985820_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2985923_2986664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987798_2988923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988968_2989337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989578_2990529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991564_2992107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2992492_2993443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2993439_2994348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994474_2995311_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995823_2996933_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2996994_2997945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	3397749	3442821	4103236	tRNA,transposase	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3397749_3398700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399466_3400561_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400553_3401888_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401841_3402525_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402550_3403714_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403710_3404712_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404711_3405584_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405580_3406330_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406326_3407118_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407114_3408254_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408529_3409315_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409348_3410131_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410134_3410524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411663_3412527_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412562_3413651_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413647_3414598_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414951_3417930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418856_3419735_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421683_3422634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422630_3423098_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423140_3423911_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423931_3424732_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424742_3426152_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426246_3427032_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427271_3428288_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428395_3428788_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428925_3429606_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429610_3430582_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430677_3431628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3433132_3433834_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3433833_3435258_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3436327_3437668_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3437783_3439547_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439658_3440537_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440649_3441465_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441468_3441720_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441804_3442821_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	3460565	3512972	4103236	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3460565_3461582_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461677_3462388_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462384_3463374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463469_3465101_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465103_3465841_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3465996_3466869_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467218_3468358_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468354_3469014_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469085_3469718_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469747_3470266_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470276_3471386_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471432_3472287_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472288_3473191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474413_3475364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477120_3478110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478285_3479074_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479070_3480102_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480120_3480684_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480739_3482260_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482523_3483228_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483235_3483964_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484078_3484453_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484495_3485785_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485781_3486951_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486947_3487787_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487846_3488782_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488794_3489745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489843_3490806_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490837_3491197_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491321_3492224_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492225_3493998_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494032_3494809_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496132_3497083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3497934_3498255_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3498327_3499209_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3499325_3499568_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3499705_3500176_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3500188_3500728_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3500762_3502304_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3502402_3503308_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3503350_3504751_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3504760_3505183_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3505365_3506250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3506325_3507402_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3507708_3509811_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3509853_3511923_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3512021_3512972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017167	Bordetella pertussis strain J308 chromosome, complete genome	4103236	3530090	3583891	4103236	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3530090_3531041_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531381_3532332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532430_3533381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533677_3534175_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534217_3535993_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536000_3536867_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536873_3537608_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538777_3539572_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539861_3540452_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540485_3541814_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541888_3543034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543145_3544144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544106_3544541_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546057_3546942_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546938_3548144_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548140_3549001_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549113_3550904_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550944_3551589_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551610_3551919_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552084_3553371_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554804_3555755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557706_3558921_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559026_3560016_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560012_3560621_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560633_3561263_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561259_3561880_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561911_3562703_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563554_3564010_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564028_3564955_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565008_3566295_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567225_3568098_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568094_3569045_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569143_3570094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3570198_3570429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3570555_3570945_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3570961_3573343_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3573335_3574712_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3574727_3575723_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3575741_3576734_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3576974_3577535_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3577539_3577866_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3577902_3578715_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3578725_3579808_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3579894_3581169_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3581891_3582842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3582940_3583891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
