The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	69080	122068	4106009	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_005012808.1|69080_70031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70124_70439_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71631_73539_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73700_74321_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74352_74934_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75022_75274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75275_76118_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76223_77633_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77629_78580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78654_79599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79595_81470_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82817_83522_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83518_84625_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84886_85480_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85476_86664_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86726_87986_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88009_89098_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89105_90206_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90209_90785_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90788_91841_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91971_92979_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92980_94267_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94463_95267_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95263_96130_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96204_97335_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97334_98174_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99106_99709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99738_100392_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100524_101781_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101861_102728_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102803_103079_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103086_103749_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103810_104812_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104826_105375_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105432_106329_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106325_107387_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107422_108373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109272_110466_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110547_111177_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111238_111922_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111931_113614_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113901_114249_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114339_114657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114939_115956_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116031_116832_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116828_117704_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117714_119007_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119049_120090_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120195_121017_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121117_122068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	164882	236252	4106009	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	57	NA	NA
WP_005015810.1|164882_165833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167276_168179_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168156_168786_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169068_170499_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170532_171162_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171210_172818_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172842_173526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173607_174084_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174290_175241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176356_176884_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176975_177791_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177851_178586_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178623_180702_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180948_181221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181322_182408_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182411_184316_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184312_187987_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188047_188611_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188618_189041_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189068_189488_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189516_189963_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190089_190587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190741_193012_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193087_194293_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|195442_196078_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196074_196968_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197362_198463_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198544_198919_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198978_201843_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201987_202728_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202797_204009_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204037_205006_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|206725_207049_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207153_208194_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208199_208979_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209024_209321_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209346_209622_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209678_210323_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210322_211009_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211207_211990_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212040_212766_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212797_214147_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214258_215191_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215648_218444_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219037_221881_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222051_222771_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222809_223358_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223512_224412_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_003818947.1|225603_226299_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226315_227728_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227840_229271_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229312_231226_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231544_232111_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232201_233203_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233317_234268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234354_235305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235301_236252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	250665	302997	4106009	protease,transposase,tRNA	Wolbachia_phage(14.29%)	44	NA	NA
WP_003814337.1|250665_251607_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251603_253493_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253579_254218_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254360_255746_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255676_256213_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256364_257756_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257772_258753_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258888_259872_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259936_260836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260942_262697_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262704_263829_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263842_264823_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265552_266503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267062_267608_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267733_269311_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269326_270481_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270494_270620_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929715.1|272363_274043_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274105_274654_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275796_276075_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277118_278069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278345_278507_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279173_279623_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279632_280244_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280402_281251_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281276_282659_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282723_283365_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283504_283963_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283987_284764_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284817_285954_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285950_286901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|286999_287626_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287648_288575_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288583_290170_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290166_291171_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_010929724.1|292261_293263_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293333_294143_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294220_296080_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296208_297411_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297524_298406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299908_300469_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300528_301479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301670_301958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302046_302997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	390829	448336	4106009	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390829_391780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391916_392834_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392830_393079_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393075_394281_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394353_395349_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395371_396592_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396588_397233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398963_399773_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400077_401031_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401129_402113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402039_402741_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402789_403560_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403556_404735_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404902_406609_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406605_407502_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407542_409132_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409181_410174_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410242_410842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411302_412283_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412358_413309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413396_414311_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414307_414967_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415056_415980_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|415985_416441_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416437_417541_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417496_417769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417728_419348_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419344_420403_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420532_421027_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421119_422097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422292_423498_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423494_425006_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425021_426335_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426525_426705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427114_427849_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430293_431244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431375_431774_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432184_432655_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432743_433088_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433187_434588_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436375_436894_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437004_437760_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437955_439188_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439180_439966_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440032_441004_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441014_441992_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442117_443290_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443316_444345_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444410_445604_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447385_448336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	619713	702032	4106009	tRNA,protease,terminase,tail,transposase	uncultured_Caudovirales_phage(16.67%)	79	NA	NA
WP_005012067.1|619713_620664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621362_621746_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621803_622406_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622423_622825_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622940_623852_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623848_624430_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625224_625959_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|625999_627049_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627196_627775_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628161_629139_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629232_633627_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633827_634676_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634834_635647_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635702_636653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636751_637552_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637613_637997_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638008_639361_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639648_639978_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|639980_640730_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640912_641833_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641879_642092_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642114_642537_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642553_643654_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643750_645268_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645343_646183_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646204_647077_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647167_648262_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648555_649506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|650604_650964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|651345_652383_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|652699_654040_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|654049_654502_-	membrane protein	NA	NA	NA	NA	NA
WP_023995141.1|655844_656870_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656910_657150_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657219_658809_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658808_659357_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659437_660010_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660028_660940_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661013_661982_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662104_663178_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663182_665003_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|666117_666453_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666586_667237_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667258_668677_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668746_669502_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669470_670229_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670239_671121_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671137_671845_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671847_672606_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672815_674558_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674550_675075_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675114_675909_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|677247_678198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678449_678656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678727_679339_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679893_680145_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680137_680827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247942.1|682672_683158_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683144_684422_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684424_685843_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685871_686927_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686932_687175_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687297_687900_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688328_689279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689953_690205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690267_690750_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690763_690952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690951_691347_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691343_691742_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691738_692161_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692168_692669_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692923_693442_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693451_693781_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693798_694089_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694114_696727_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696736_697096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697163_697697_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697693_698083_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698075_702032_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 6
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1046212	1086851	4106009	holin,transposase,tRNA	uncultured_Mediterranean_phage(40.0%)	32	NA	NA
WP_005012067.1|1046212_1047163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047461_1048199_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048634_1048958_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048992_1049553_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049672_1050548_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050560_1051508_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051609_1051903_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051929_1053987_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054001_1054502_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054575_1056282_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057145_1058198_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058250_1058640_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058648_1059281_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059380_1060397_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061227_1062235_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930149.1|1063870_1064758_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064898_1065372_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065361_1066384_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066380_1067808_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068745_1069762_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070094_1071030_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071079_1072960_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073026_1073371_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_023853534.1|1074646_1075720_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075877_1077314_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077404_1078046_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078381_1079398_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081440_1082391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083593_1085015_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085278_1085995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086079_1086397_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086437_1086851_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 7
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1153154	1236117	4106009	transposase,tRNA	Erysipelothrix_phage(25.0%)	54	NA	NA
WP_023853221.1|1153154_1154951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1154950_1155919_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155988_1156834_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156901_1157456_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157502_1158453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158551_1159184_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159348_1161631_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161785_1164482_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164607_1165096_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167506_1170377_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170422_1171637_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171866_1173294_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173391_1174483_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174495_1175254_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175341_1176244_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930207.1|1177318_1178302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178356_1179079_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180556_1181912_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181992_1184368_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184532_1186608_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186669_1187464_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187571_1188534_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010930216.1|1189383_1191021_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191088_1191826_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1191928_1192504_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192676_1193213_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193245_1193560_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193575_1194421_+	membrane protein	NA	NA	NA	NA	NA
WP_003813574.1|1195915_1196797_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196895_1197846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197842_1198253_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198360_1199215_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199207_1200170_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200215_1201340_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201445_1202324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202448_1203228_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203381_1204803_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205237_1206935_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207161_1208103_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208429_1209176_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209183_1210110_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210231_1211149_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211188_1212142_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212166_1212745_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214417_1215026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215103_1215457_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215540_1216530_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216731_1217682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217768_1218719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1219925_1220954_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221033_1222332_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222328_1222910_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223222_1227269_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_005012067.1|1235166_1236117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1297684	1338352	4106009	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1297684_1298635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298675_1299746_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299768_1300647_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300818_1301790_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1301952_1302795_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302956_1303637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303630_1304800_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304796_1305828_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305895_1307113_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307147_1308680_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308760_1309384_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309414_1310026_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310061_1310532_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310963_1311968_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312004_1313519_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313522_1314482_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314510_1315314_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315315_1316950_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317032_1318094_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318292_1318562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318565_1319090_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319505_1320456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320452_1321487_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321595_1322234_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322528_1322756_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322878_1323592_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323836_1324787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1324926_1325172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325286_1326735_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326845_1327796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1327792_1328242_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1328436_1329387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1329722_1329920_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1329935_1330295_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1330369_1331392_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1331404_1333822_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1333839_1334169_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1334227_1334638_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1335137_1336229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1336412_1337009_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1337108_1337291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1337401_1338352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1418023	1470171	4106009	transposase,tRNA	Salmonella_phage(25.0%)	42	NA	NA
WP_005013747.1|1418023_1418974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419140_1419494_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419506_1419869_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1419910_1420336_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420538_1421795_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421993_1422974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423123_1424365_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424463_1425414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425422_1426118_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1428938_1429538_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429548_1431714_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431737_1433522_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433521_1433611_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434305_1434578_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434577_1436644_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436640_1437591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437688_1438639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438754_1439087_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010930948.1|1439755_1440715_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440747_1443117_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443116_1443749_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443850_1445191_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445237_1446593_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446883_1447120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447307_1447625_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447897_1448413_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448683_1449439_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449777_1449984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449991_1450651_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450945_1453150_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453260_1454484_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454606_1455581_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455648_1456842_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456856_1457657_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457653_1459510_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459506_1460112_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460130_1461516_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462241_1463468_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463556_1464339_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464436_1465387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465413_1466187_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_076879548.1|1469220_1470171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1514095	1582174	4106009	transposase,tRNA	Streptococcus_virus(11.11%)	56	NA	NA
WP_010930416.1|1514095_1514584_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514701_1515280_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515385_1515754_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515852_1516803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516809_1517922_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518608_1519811_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520014_1522675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522687_1526092_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526759_1528985_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529031_1529358_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529408_1530017_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530115_1531066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531135_1531900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531896_1532433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532599_1533451_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533510_1534137_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534133_1535084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535181_1536294_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536283_1537285_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537390_1538902_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1538898_1540203_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540314_1540875_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541142_1541697_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542152_1542368_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542622_1545220_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545216_1546404_+	cupin	NA	NA	NA	NA	NA
WP_158227706.1|1546672_1546822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930436.1|1547060_1547675_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547763_1548885_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1548902_1549808_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550699_1551650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551831_1552584_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552652_1553312_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553308_1554037_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554049_1556329_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556353_1556557_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556598_1557231_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557366_1558284_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558280_1558994_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559231_1560002_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_162291326.1|1560006_1560564_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.3e-20
WP_003811138.1|1560849_1562340_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562398_1562683_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563248_1564175_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564311_1565052_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565218_1566595_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566776_1567682_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569333_1571136_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571253_1571904_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572002_1572953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572974_1574195_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574380_1575793_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575856_1576924_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930452.1|1578419_1579364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930453.1|1580298_1581204_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581223_1582174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1831466	1890734	4106009	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831466_1832417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832541_1833351_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833551_1834502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835775_1836993_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838048_1838951_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839027_1839900_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840030_1840399_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840456_1841503_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841698_1842955_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842959_1844297_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844446_1845403_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845505_1846438_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846553_1846874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846866_1847226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847273_1848848_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1848900_1849845_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849862_1850693_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850685_1852320_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852316_1853672_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854578_1856156_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856159_1857434_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857531_1857906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859621_1860755_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860792_1861398_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861394_1862213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862284_1864909_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1864895_1865150_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865216_1865798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866101_1866362_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866527_1867151_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867150_1867924_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1867920_1869129_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869154_1869628_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869701_1870652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870750_1871701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871799_1873149_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1873914_1874670_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874761_1877644_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877966_1878392_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878419_1879568_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879564_1880071_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880086_1881373_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881422_1882718_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882719_1883358_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883363_1884521_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884547_1885903_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1885906_1886977_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887115_1887352_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887439_1888546_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888511_1889816_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889834_1890734_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 12
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1900974	1945292	4106009	transposase	Staphylococcus_phage(25.0%)	41	NA	NA
WP_005013747.1|1900974_1901925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902023_1902974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903173_1904259_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904274_1905036_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905032_1905956_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906054_1906579_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906587_1907331_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907426_1907666_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907679_1907832_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1907917_1909408_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909499_1910438_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910434_1910611_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910613_1911276_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1912897_1913041_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913037_1914012_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914177_1915128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915124_1916399_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916502_1917696_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917692_1918346_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918342_1919779_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919766_1920126_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1921097_1922048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930767.1|1925215_1926736_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926823_1927474_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928422_1929718_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|1930721_1931597_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931586_1931943_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932073_1933048_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933177_1933357_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933454_1933979_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933989_1934826_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934938_1935310_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935306_1935858_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935873_1937565_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937613_1938294_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938541_1939006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939175_1940105_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940117_1940765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940838_1942656_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942739_1943690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944341_1945292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	1962617	2039424	4106009	transposase	Vibrio_phage(20.0%)	60	NA	NA
WP_005013747.1|1962617_1963568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1964053_1964230_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1964914_1965886_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1965889_1966744_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1966762_1967584_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1967615_1968410_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1968458_1969064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1969021_1969855_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1970140_1971646_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1971687_1972470_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930743.1|1972981_1974208_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1974200_1974605_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1974764_1975067_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1975063_1976014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976235_1977186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977284_1978250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978387_1979287_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1981881_1983369_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_003816680.1|1984646_1985966_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930736.1|1986867_1988016_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988033_1988348_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988369_1989092_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989091_1989910_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989914_1990442_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990447_1991704_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992062_1993202_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993279_1994152_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995022_1995973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995932_1996568_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996927_1998250_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998568_1999390_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000814_2001387_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001426_2003256_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003218_2004277_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004314_2004776_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004860_2005607_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007097_2010328_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010394_2011726_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011977_2012352_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012454_2013633_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013643_2014234_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014344_2015151_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015176_2015971_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016971_2017946_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018104_2018617_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018773_2019745_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930716.1|2022291_2023593_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023543_2024308_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024421_2025192_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025276_2026464_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026536_2026911_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027011_2028274_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028270_2029128_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029299_2030301_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446265.1|2033264_2034416_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034784_2035021_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035084_2035252_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035365_2037261_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037424_2038375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038473_2039424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	2607154	2672944	4106009	transposase	Planktothrix_phage(100.0%)	46	NA	NA
WP_010931363.1|2607154_2608171_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608417_2609206_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609272_2609953_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609949_2610720_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2610818_2611769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2611824_2612742_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612752_2613931_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613950_2614946_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616534_2617143_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617130_2618171_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618188_2619151_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619147_2620341_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620337_2621135_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621160_2622147_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622165_2624205_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624406_2625087_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625100_2626012_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626008_2626587_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626725_2627631_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627638_2631058_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631045_2633646_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634601_2635234_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635627_2636386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636382_2637585_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637772_2638723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639630_2640776_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640762_2641518_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641634_2641814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641879_2642830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930308.1|2645632_2648974_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930307.1|2648970_2651166_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930306.1|2651170_2653291_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930305.1|2653287_2655042_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930303.1|2662013_2662868_-	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003811326.1|2662864_2663680_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930302.1|2663739_2665071_+	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811324.1|2665109_2665616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247534.1|2665855_2666209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811322.1|2666280_2666706_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247533.1|2666738_2667626_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930301.1|2667628_2667952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930300.1|2669188_2669593_+	DoxX family protein	NA	NA	NA	NA	NA
WP_019247530.1|2669774_2670206_+	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_023852768.1|2670438_2670846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2670944_2671895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671993_2672944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	2807476	2870965	4106009	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_076879566.1|2807476_2808427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808755_2809361_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809414_2810728_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2810802_2811273_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811272_2812061_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812071_2813724_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2813811_2814762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815923_2816430_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816426_2817191_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817206_2817491_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817555_2818545_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818716_2819646_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819617_2820304_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820337_2820883_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820927_2822193_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822189_2823092_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824273_2825218_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825312_2826830_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826871_2828500_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828607_2829489_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832601_2832976_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833000_2833339_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833382_2835017_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835055_2836402_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836509_2837931_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838000_2838585_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838687_2839638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839772_2840879_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840889_2841987_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842131_2843337_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843343_2843865_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843861_2844344_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844349_2844601_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844581_2845067_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845202_2848664_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848681_2849566_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849575_2850007_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850253_2850757_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850834_2852235_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852309_2853185_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853181_2854189_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854656_2854962_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855052_2855643_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855832_2856849_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857040_2859377_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859458_2859893_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2861038_2861989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861985_2862780_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2862811_2863516_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863590_2864391_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864387_2864795_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2864791_2865433_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865425_2867426_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868686_2870018_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870014_2870965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	2894386	2958132	4106009	protease,transposase	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
WP_010931114.1|2894386_2896702_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896757_2898926_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898922_2904103_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904201_2904516_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904743_2904989_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905083_2905602_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905701_2906907_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907022_2908420_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908536_2909115_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909187_2910579_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910746_2911697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911977_2912598_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912594_2913008_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913004_2914048_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914103_2914292_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914301_2915066_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915156_2915813_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915904_2916663_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916688_2918290_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918490_2919495_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919595_2919859_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919976_2920753_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921342_2922293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924676_2925789_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925845_2926796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2927004_2927226_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2927439_2928846_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2928842_2930147_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2930143_2931331_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2931547_2932000_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2932002_2932467_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2932546_2934226_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_096913212.1|2934359_2935307_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2935386_2936355_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2936375_2937749_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2937745_2938582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2938698_2939154_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2939169_2939442_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2939534_2939858_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2939905_2940286_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2940505_2941303_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2941459_2943322_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2943371_2944283_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2944287_2944554_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2944640_2945471_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2945645_2946611_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2946781_2947792_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2947939_2949091_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2950233_2951706_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2951716_2952127_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2952190_2953237_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2953343_2954222_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2954235_2955432_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2955493_2957185_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2957181_2958132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	2966891	3011410	4106009	transposase	Bacillus_virus(20.0%)	42	NA	NA
WP_010930176.1|2966891_2967842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967922_2969071_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969127_2970078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970176_2970482_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970510_2970945_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970946_2972191_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972187_2972898_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972912_2973824_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974186_2974591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974587_2975046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975052_2975961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975957_2976824_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2976810_2977638_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977648_2978776_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979852_2981091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981132_2982395_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982401_2983154_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983205_2983391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983666_2984131_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984162_2984822_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984966_2987075_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987071_2988022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988125_2988746_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988849_2989590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990724_2991849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991894_2992263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992504_2993455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994490_2995033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995418_2996369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996365_2997274_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997400_2998237_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998749_2999859_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999920_3000871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001062_3001845_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3001858_3002623_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3002635_3003982_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004007_3004937_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005052_3005958_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3005975_3007175_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3007247_3007940_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3007988_3010415_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3010459_3011410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	3401707	3479314	4106009	transposase,tRNA	Staphylococcus_phage(12.5%)	57	NA	NA
WP_005012067.1|3401707_3402658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_101631016.1|3402738_3403368_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931344.1|3403422_3404517_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404509_3405844_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405797_3406481_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406506_3407670_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407666_3408668_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408667_3409540_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409536_3410286_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410282_3411074_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411070_3412210_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412485_3413271_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413304_3414087_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414090_3414480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415619_3416483_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416518_3417607_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3418906_3421885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422811_3423690_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425638_3426589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426585_3427053_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427095_3427866_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427886_3428687_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428697_3430107_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430201_3430987_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431226_3432243_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931357.1|3432879_3433560_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433564_3434536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814239.1|3437084_3437786_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010931361.1|3440278_3441619_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3441734_3443498_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443609_3444488_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444600_3445416_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445419_3445671_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445755_3446772_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447102_3447324_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449684_3450602_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451099_3452308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452387_3453959_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454076_3455012_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455200_3456145_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456712_3462430_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462435_3463563_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463618_3464245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464516_3465533_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465628_3466339_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466335_3467325_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467420_3469052_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469054_3469792_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469947_3470820_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471169_3472309_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472305_3472965_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473036_3473669_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_083044493.1|3473694_3474216_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474226_3475336_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475382_3476237_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476238_3477141_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478363_3479314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017165	Bordetella pertussis strain J222 chromosome, complete genome	4106009	3493787	3554844	4106009	transposase,tRNA	Escherichia_phage(20.0%)	49	NA	NA
WP_010931381.1|3493787_3494750_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3494781_3495141_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495265_3496168_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496169_3497942_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497976_3498753_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500076_3501027_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3501878_3502199_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3502271_3503153_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3503269_3503512_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3503649_3504120_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3504132_3504672_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3504706_3506248_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3506346_3507252_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3507294_3508695_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3508704_3509127_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3509309_3510194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3510269_3511346_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3511651_3513754_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3513796_3515866_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3515964_3516915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517043_3518177_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518220_3519126_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519128_3520829_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520825_3521746_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3521753_3522731_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815317.1|3525797_3526034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526160_3527024_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527112_3527934_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528013_3528751_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3528747_3529740_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529892_3530516_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530560_3531709_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534031_3534982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535322_3536273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536370_3537321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537617_3538115_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538157_3539933_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539940_3540807_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540813_3541548_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542717_3543512_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543801_3544392_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544425_3545754_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545828_3546974_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547085_3548084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548046_3548481_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549997_3550882_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550878_3552084_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552080_3552941_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553053_3554844_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
