assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002442575.1_ASM244257v1	NZ_CP023656	Halomonas hydrothermalis strain Y2 chromosome, complete genome	1	90166-90266	1	CRISPRCasFinder	no	cas14j	cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	Unclear	CAGAAAGCCAAAGTGGGAGGCCAATTCAT	29	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|179aa|up_1|NZ_CP023656.1_85268_85805_+,NA|292aa|down_0|NZ_CP023656.1_92211_93087_-,NA|207aa|down_1|NZ_CP023656.1_93190_93811_-,NA|335aa|down_2|NZ_CP023656.1_93810_94815_-,NA|263aa|down_7|NZ_CP023656.1_98689_99478_-	NA|91aa|up_9|NZ_CP023656.1_77038_77311_+	pfam13744, HTH_37, Helix-turn-helix domain	NA|404aa|up_8|NZ_CP023656.1_77465_78677_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|119aa|up_7|NZ_CP023656.1_78800_79157_+	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|97aa|up_6|NZ_CP023656.1_79274_79565_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|107aa|up_5|NZ_CP023656.1_79564_79885_-	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|1188aa|up_4|NZ_CP023656.1_80030_83594_+	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|392aa|up_3|NZ_CP023656.1_83604_84780_-	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	NA|103aa|up_2|NZ_CP023656.1_84963_85272_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|179aa|up_1|NZ_CP023656.1_85268_85805_+	NA	NA|1233aa|up_0|NZ_CP023656.1_85917_89616_+	PRK10876, recB, exonuclease V subunit beta; Provisional	NA|292aa|down_0|NZ_CP023656.1_92211_93087_-	NA	NA|207aa|down_1|NZ_CP023656.1_93190_93811_-	NA	NA|335aa|down_2|NZ_CP023656.1_93810_94815_-	NA	NA|107aa|down_3|NZ_CP023656.1_95057_95378_-	pfam04248, NTP_transf_9, Domain of unknown function (DUF427)	NA|263aa|down_4|NZ_CP023656.1_95462_96251_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|204aa|down_5|NZ_CP023656.1_96578_97190_-	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|404aa|down_6|NZ_CP023656.1_97368_98580_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|263aa|down_7|NZ_CP023656.1_98689_99478_-	NA	NA|112aa|down_8|NZ_CP023656.1_99727_100063_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|121aa|down_9|NZ_CP023656.1_100134_100497_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]
GCF_002442575.1_ASM244257v1	NZ_CP023656	Halomonas hydrothermalis strain Y2 chromosome, complete genome	2	904592-904740	2	CRISPRCasFinder	no		cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	Orphan	TTTCTGAGCTGCTTGGGCGGCAGCGAACT	29	0	0	NA	NA	NA	2	2	Orphan	cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|206aa|up_4|NZ_CP023656.1_899634_900252_+,NA|106aa|up_0|NZ_CP023656.1_904165_904483_+,NA	NA|323aa|up_9|NZ_CP023656.1_893258_894227_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|476aa|up_8|NZ_CP023656.1_894336_895764_-	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|354aa|up_7|NZ_CP023656.1_895756_896818_-	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|161aa|up_6|NZ_CP023656.1_897004_897487_-	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|469aa|up_5|NZ_CP023656.1_897639_899046_-	PRK09469, glnA, glutamate--ammonia ligase	NA|206aa|up_4|NZ_CP023656.1_899634_900252_+	NA	NA|342aa|up_3|NZ_CP023656.1_900344_901370_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|308aa|up_2|NZ_CP023656.1_901512_902436_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|540aa|up_1|NZ_CP023656.1_902405_904025_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|106aa|up_0|NZ_CP023656.1_904165_904483_+	NA	NA|248aa|down_0|NZ_CP023656.1_904747_905491_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|148aa|down_1|NZ_CP023656.1_905495_905939_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|256aa|down_2|NZ_CP023656.1_906083_906851_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|222aa|down_3|NZ_CP023656.1_906843_907509_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP023656.1_907546_908188_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|286aa|down_5|NZ_CP023656.1_908285_909143_-	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|503aa|down_6|NZ_CP023656.1_909435_910944_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|257aa|down_7|NZ_CP023656.1_911083_911854_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|256aa|down_8|NZ_CP023656.1_911954_912722_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|474aa|down_9|NZ_CP023656.1_912735_914157_+	PRK07678, PRK07678, aminotransferase; Validated
GCF_002442575.1_ASM244257v1	NZ_CP023656	Halomonas hydrothermalis strain Y2 chromosome, complete genome	3	2679316-2686853	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	 Type I-U?,Type I-C,Type I-U	GTTTCTATCCGCACGCCCCGGGCGGGGCGCGAC,GTTTCTATCCGCACGCCCCGGGCGGGGCGCGAC,GTTTCTATCCGCACGCCCCGGGCGGGGCGCGAC	33,33,33	9	9	2680096-2680131|2682127-2682161|2682601-2682636|2682940-2682972|2683006-2683039|2683411-2683445|2683546-2683580|2684426-2684460|2685301-2685335	NZ_CP023656.1_1979354-1979319|NZ_CP023656.1_1982782-1982748|NZ_CP023656.1_1983637-1983602|NZ_CP023656.1_1974659-1974627|NZ_CP023656.1_1981130-1981163|NZ_CP023656.1_1985594-1985560|NZ_CP023656.1_1948758-1948724|NZ_CP023656.1_1980232-1980198|NZ_CP023656.1_1980463-1980497	NA:NA:NA	111,111,61	111	TypeI-U?,TypeI-C,TypeI-U	cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA,NA	NA|226aa|up_9|NZ_CP023656.1_2666987_2667665_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|306aa|up_8|NZ_CP023656.1_2667668_2668586_-	cd01137, PsaA, Metal binding protein PsaA	NA|196aa|up_7|NZ_CP023656.1_2668834_2669422_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|340aa|up_6|NZ_CP023656.1_2669458_2670478_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|268aa|up_5|NZ_CP023656.1_2670486_2671290_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|531aa|up_4|NZ_CP023656.1_2671341_2672934_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|up_3|NZ_CP023656.1_2672939_2673650_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|188aa|up_2|NZ_CP023656.1_2673810_2674374_+	COG4337, COG4337, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1032aa|up_1|NZ_CP023656.1_2674451_2677547_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|418aa|up_0|NZ_CP023656.1_2677755_2679009_-	pfam00375, SDF, Sodium:dicarboxylate symporter family	cas2|97aa|down_0|NZ_CP023656.1_2687041_2687332_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|347aa|down_1|NZ_CP023656.1_2687350_2688391_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|213aa|down_2|NZ_CP023656.1_2688396_2689035_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|290aa|down_3|NZ_CP023656.1_2689045_2689915_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|600aa|down_4|NZ_CP023656.1_2689911_2691711_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|223aa|down_5|NZ_CP023656.1_2691707_2692376_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|751aa|down_6|NZ_CP023656.1_2692402_2694655_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|426aa|down_7|NZ_CP023656.1_2694857_2696135_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|283aa|down_8|NZ_CP023656.1_2696076_2696925_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|371aa|down_9|NZ_CP023656.1_2697121_2698234_+	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed
GCF_002442575.1_ASM244257v1	NZ_CP023656	Halomonas hydrothermalis strain Y2 chromosome, complete genome	4	3145791-3145930	4	CRISPRCasFinder	no		cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	Orphan	CCGCTGGACTCAGACGGTGACGGCGTGCCGGATTACCGTGACCAGTGCCC	50	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,DEDDh,DinG,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|168aa|up_3|NZ_CP023656.1_3142074_3142578_+,NA|123aa|down_9|NZ_CP023656.1_3154539_3154908_+	NA|373aa|up_9|NZ_CP023656.1_3136878_3137997_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|553aa|up_8|NZ_CP023656.1_3138042_3139701_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|195aa|up_7|NZ_CP023656.1_3139729_3140314_+	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|287aa|up_6|NZ_CP023656.1_3140310_3141171_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|64aa|up_5|NZ_CP023656.1_3141175_3141367_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|235aa|up_4|NZ_CP023656.1_3141365_3142070_+	cd06662, SURF1, SURF1 superfamily	NA|168aa|up_3|NZ_CP023656.1_3142074_3142578_+	NA	NA|351aa|up_2|NZ_CP023656.1_3142615_3143668_+	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|308aa|up_1|NZ_CP023656.1_3143715_3144639_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|156aa|up_0|NZ_CP023656.1_3144730_3145198_+	pfam10675, DUF2489, Protein of unknown function (DUF2489)	NA|641aa|down_0|NZ_CP023656.1_3146518_3148441_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|164aa|down_1|NZ_CP023656.1_3148501_3148993_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|down_2|NZ_CP023656.1_3149074_3149269_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|118aa|down_3|NZ_CP023656.1_3149322_3149676_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|340aa|down_4|NZ_CP023656.1_3149833_3150853_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|794aa|down_5|NZ_CP023656.1_3150879_3153261_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|106aa|down_6|NZ_CP023656.1_3153340_3153658_+	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|69aa|down_7|NZ_CP023656.1_3153728_3153935_-	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|154aa|down_8|NZ_CP023656.1_3154075_3154537_+	PRK08105, PRK08105, flavodoxin; Provisional	NA|123aa|down_9|NZ_CP023656.1_3154539_3154908_+	NA
