assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002441955.1_ASM244195v1	NZ_CP023669	Methylomonas koyamae strain LM6 chromosome, complete genome	1	1412277-1416275	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3	Type I-E	GCGTTCCCCGCACCCGCGGGGATGAACC,GCGTTCCCCGCACCCGCGGGGATGAACCG,GCGTTCCCCGCACCCGCGGGGATGAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	64,65,65	65	TypeI-E	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3,c2c4_V-U1,PD-DExK	NA,NA|453aa|down_2|NZ_CP023669.1_1419415_1420774_+	cas8e|517aa|up_9|NZ_CP023669.1_1404948_1406499_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|181aa|up_8|NZ_CP023669.1_1406495_1407038_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|86aa|up_7|NZ_CP023669.1_1407024_1407282_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|81aa|up_6|NZ_CP023669.1_1407285_1407528_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)	cas7|387aa|up_5|NZ_CP023669.1_1407538_1408699_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|225aa|up_4|NZ_CP023669.1_1408701_1409376_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|257aa|up_3|NZ_CP023669.1_1409326_1410097_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	NA|92aa|up_2|NZ_CP023669.1_1410144_1410420_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|110aa|up_1|NZ_CP023669.1_1410416_1410746_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	cas1|304aa|up_0|NZ_CP023669.1_1410780_1411692_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|477aa|down_0|NZ_CP023669.1_1416509_1417940_+	PRK13517, PRK13517, glutamate--cysteine ligase	NA|347aa|down_1|NZ_CP023669.1_1418029_1419070_+	cd06256, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup	NA|453aa|down_2|NZ_CP023669.1_1419415_1420774_+	NA	NA|418aa|down_3|NZ_CP023669.1_1421007_1422261_+	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	NA|206aa|down_4|NZ_CP023669.1_1422478_1423096_-	cd05540, UreG, urease accessory protein UreG	NA|225aa|down_5|NZ_CP023669.1_1423356_1424031_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|144aa|down_6|NZ_CP023669.1_1424020_1424452_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|568aa|down_7|NZ_CP023669.1_1424685_1426389_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|106aa|down_8|NZ_CP023669.1_1426385_1426703_-	PRK13203, ureB, urease subunit beta; Reviewed	NA|346aa|down_9|NZ_CP023669.1_1427009_1428047_+	pfam01548, DEDD_Tnp_IS110, Transposase
GCF_002441955.1_ASM244195v1	NZ_CP023669	Methylomonas koyamae strain LM6 chromosome, complete genome	2	2121921-2129517	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3	Type I-F	GTCCGCCGCCGCACAGGCGGCTTAGAAA,GTCCGCCGCCGCACAGGCGGCTTAGAAA,GTCCGCCGCCGCACAGGCGGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	126,126,47	126	TypeI-F	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3,c2c4_V-U1,PD-DExK	NA|142aa|up_7|NZ_CP023669.1_2111027_2111453_+,NA|381aa|down_7|NZ_CP023669.1_2144925_2146068_+	NA|459aa|up_9|NZ_CP023669.1_2108399_2109776_+	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|184aa|up_8|NZ_CP023669.1_2109769_2110321_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|142aa|up_7|NZ_CP023669.1_2111027_2111453_+	NA	NA|594aa|up_6|NZ_CP023669.1_2111476_2113258_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	cas1|329aa|up_5|NZ_CP023669.1_2113389_2114376_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1113aa|up_4|NZ_CP023669.1_2114394_2117733_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|417aa|up_3|NZ_CP023669.1_2117970_2119221_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|301aa|up_2|NZ_CP023669.1_2119217_2120120_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|up_1|NZ_CP023669.1_2120123_2121146_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|213aa|up_0|NZ_CP023669.1_2121149_2121788_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|267aa|down_0|NZ_CP023669.1_2129984_2130785_-	smart00470, ParB, ParB-like nuclease domain	NA|105aa|down_1|NZ_CP023669.1_2131686_2132001_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|303aa|down_2|NZ_CP023669.1_2131958_2132867_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|391aa|down_3|NZ_CP023669.1_2136304_2137477_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|1036aa|down_4|NZ_CP023669.1_2137608_2140716_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|376aa|down_5|NZ_CP023669.1_2140726_2141854_-	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters)	NA|906aa|down_6|NZ_CP023669.1_2141982_2144700_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|381aa|down_7|NZ_CP023669.1_2144925_2146068_+	NA	NA|320aa|down_8|NZ_CP023669.1_2146110_2147070_+	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|502aa|down_9|NZ_CP023669.1_2147196_2148702_+	pfam00082, Peptidase_S8, Subtilase family
GCF_002441955.1_ASM244195v1	NZ_CP023669	Methylomonas koyamae strain LM6 chromosome, complete genome	3	2702259-2707861	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	WYL,csb1gr7,csb2gr5,cas3,cas8u1,cas1,cas2	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3	Unclear	GCATTCCCCGGCCTCCCGCCGGGGCCTCATTGAAGC,GCATTCCCCGGCCTCCCGCCGGGGCCTCATTGAAGC,GCATTCCCCGGCCTCCCGCCGGGGCCTCATTGAAGC	36,36,36	0	0	NA	NA	NA:NA:NA	77,77,77	77	Unclear	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3,c2c4_V-U1,PD-DExK	cas8u1|308aa|up_5|NZ_CP023669.1_2698021_2698945_+,NA|69aa|up_4|NZ_CP023669.1_2699002_2699209_-,NA|68aa|up_2|NZ_CP023669.1_2699579_2699783_+,NA|291aa|down_2|NZ_CP023669.1_2711993_2712866_-,NA|365aa|down_7|NZ_CP023669.1_2719379_2720474_-	WYL|324aa|up_9|NZ_CP023669.1_2691388_2692360_+	pfam13280, WYL, WYL domain	csb1gr7|405aa|up_8|NZ_CP023669.1_2692472_2693687_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|491aa|up_7|NZ_CP023669.1_2693690_2695163_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|962aa|up_6|NZ_CP023669.1_2695152_2698038_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	cas8u1|308aa|up_5|NZ_CP023669.1_2698021_2698945_+	NA	NA|69aa|up_4|NZ_CP023669.1_2699002_2699209_-	NA	NA|103aa|up_3|NZ_CP023669.1_2699196_2699505_-	PHA00617, PHA00617, ribbon-helix-helix domain containing protein	NA|68aa|up_2|NZ_CP023669.1_2699579_2699783_+	NA	cas1|574aa|up_1|NZ_CP023669.1_2699807_2701529_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|99aa|up_0|NZ_CP023669.1_2701528_2701825_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|1161aa|down_0|NZ_CP023669.1_2707958_2711441_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|178aa|down_1|NZ_CP023669.1_2711460_2711994_-	pfam13689, DUF4154, Domain of unknown function (DUF4154)	NA|291aa|down_2|NZ_CP023669.1_2711993_2712866_-	NA	NA|677aa|down_3|NZ_CP023669.1_2712899_2714930_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|675aa|down_4|NZ_CP023669.1_2714986_2717011_-	cd01948, EAL, EAL domain	NA|138aa|down_5|NZ_CP023669.1_2717056_2717470_-	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|477aa|down_6|NZ_CP023669.1_2717933_2719364_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|365aa|down_7|NZ_CP023669.1_2719379_2720474_-	NA	NA|333aa|down_8|NZ_CP023669.1_2721521_2722520_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|256aa|down_9|NZ_CP023669.1_2723137_2723905_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]
GCF_002441955.1_ASM244195v1	NZ_CP023670	Methylomonas koyamae strain LM6 plasmid pLM6, complete sequence	1	40145-40469	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	c2c4_V-U1	c2c4_V-U1,PD-DExK	Type V-U1	GTCTCATTAACCAACCCAATGAGCAGGGTTTGTAAC,GTCTCATTAACCAACCCAATGAGCAGGGTTTGTAAC,GTCTCATTAACCAACCCAATGAGCAGGGTTTGTAACGA	36,36,38	0	0	NA	NA	NA:NA:NA	4,4,2	4	TypeV-U1	WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csb1gr7,csb2gr5,cas8u1,cas2,csa3,c2c4_V-U1,PD-DExK	NA|407aa|up_7|NZ_CP023670.1_34710_35931_+,NA|72aa|up_4|NZ_CP023670.1_37370_37586_+,NA|213aa|up_0|NZ_CP023670.1_39115_39754_+,NA|293aa|down_2|NZ_CP023670.1_44825_45704_+,NA|114aa|down_4|NZ_CP023670.1_48890_49232_+,NA|96aa|down_5|NZ_CP023670.1_49234_49522_+,NA|103aa|down_6|NZ_CP023670.1_49996_50305_+,NA|102aa|down_7|NZ_CP023670.1_50307_50613_+,NA|197aa|down_8|NZ_CP023670.1_50661_51252_-	NA|146aa|up_9|NZ_CP023670.1_33958_34396_+	TIGR03741, PRTRC_E, PRTRC system protein E	NA|72aa|up_8|NZ_CP023670.1_34407_34623_+	pfam14454, Prok_Ub, Prokaryotic Ubiquitin	NA|407aa|up_7|NZ_CP023670.1_34710_35931_+	NA	NA|257aa|up_6|NZ_CP023670.1_35923_36694_+	TIGR03737, PRTRC_B, PRTRC system protein B	NA|210aa|up_5|NZ_CP023670.1_36705_37335_+	TIGR03735, PRTRC_A, PRTRC system protein A	NA|72aa|up_4|NZ_CP023670.1_37370_37586_+	NA	NA|242aa|up_3|NZ_CP023670.1_37662_38388_+	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein	NA|81aa|up_2|NZ_CP023670.1_38466_38709_+	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins	NA|106aa|up_1|NZ_CP023670.1_38739_39057_+	pfam00816, Histone_HNS, H-NS histone family	NA|213aa|up_0|NZ_CP023670.1_39115_39754_+	NA	c2c4_V-U1|590aa|down_0|NZ_CP023670.1_40477_42247_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|640aa|down_1|NZ_CP023670.1_42268_44188_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|293aa|down_2|NZ_CP023670.1_44825_45704_+	NA	NA|1036aa|down_3|NZ_CP023670.1_45705_48813_+	cd18793, SF2_C_SNF, C-terminal helicase domain of the SNF family helicases	NA|114aa|down_4|NZ_CP023670.1_48890_49232_+	NA	NA|96aa|down_5|NZ_CP023670.1_49234_49522_+	NA	NA|103aa|down_6|NZ_CP023670.1_49996_50305_+	NA	NA|102aa|down_7|NZ_CP023670.1_50307_50613_+	NA	NA|197aa|down_8|NZ_CP023670.1_50661_51252_-	NA	NA|103aa|down_9|NZ_CP023670.1_51223_51532_-	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
