The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	0	8462	2571633		Tupanvirus(50.0%)	7	NA	NA
WP_002478666.1|1025_1703_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002460355.1|1860_2088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492478.1|2214_3390_+	MFS transporter	NA	NA	NA	NA	NA
WP_002492534.1|3546_4896_-	carboxylesterase/lipase family protein	NA	NA	NA	NA	NA
WP_002460352.1|5016_5613_+	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_002492437.1|5773_6826_-	2,3-butanediol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.2	5.3e-10
WP_002478670.1|7211_8462_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	51.6	1.4e-20
>prophage 2
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	13197	13509	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_002460342.1|13197_13509_+	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	43.0	2.7e-15
>prophage 3
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	17106	18861	2571633		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002492853.1|17106_18861_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	30.4	3.5e-67
>prophage 4
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	24176	25688	2571633		Mycobacterium_phage(100.0%)	1	NA	NA
WP_002492815.1|24176_25688_-	serine hydrolase FLP	NA	A0A076YS03	Mycobacterium_phage	25.1	4.6e-07
>prophage 5
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	37620	41014	2571633		Streptococcus_phage(50.0%)	4	NA	NA
WP_002492841.1|37620_38796_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.7	3.8e-49
WP_002478691.1|38950_39337_+	GtrA family protein	NA	NA	NA	NA	NA
WP_002460309.1|39496_40363_+	cation transporter	NA	NA	NA	NA	NA
WP_002478692.1|40588_41014_-	hypothetical protein	NA	A0A2R3ZXP9	Staphylococcus_phage	50.6	1.2e-16
>prophage 6
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	45481	46213	2571633		Bacillus_virus(100.0%)	1	NA	NA
WP_002460301.1|45481_46213_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	2.0e-24
>prophage 7
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	50057	52201	2571633		Staphylococcus_phage(100.0%)	3	NA	NA
WP_002492793.1|50057_50750_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	33.8	8.0e-31
WP_002492851.1|50746_51508_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	45.1	3.3e-54
WP_002492834.1|51511_52201_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	72.3	1.2e-84
>prophage 8
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	63180	64734	2571633		Escherichia_phage(100.0%)	1	NA	NA
WP_002492798.1|63180_64734_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	42.9	3.1e-22
>prophage 9
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	85363	85996	2571633		Indivirus(100.0%)	1	NA	NA
WP_002492839.1|85363_85996_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	26.8	6.9e-13
>prophage 10
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	111858	120045	2571633		uncultured_Caudovirales_phage(40.0%)	8	NA	NA
WP_002492800.1|111858_112389_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	55.4	2.6e-50
WP_100218003.1|112643_113372_+	DUF443 family protein	NA	NA	NA	NA	NA
WP_002460213.1|113560_114232_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	65.0	5.2e-11
WP_037540586.1|114653_116411_+	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_002460210.1|116376_116715_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002460208.1|116950_117289_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	41.7	3.7e-05
WP_002492278.1|118296_118701_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	46.3	1.2e-05
WP_002492237.1|119013_120045_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	25.2	5.4e-15
>prophage 11
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	138741	141269	2571633		Bacillus_phage(50.0%)	3	NA	NA
WP_002460180.1|138741_139416_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	46.5	1.8e-51
WP_002492233.1|139542_140604_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002492256.1|140600_141269_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	1.3e-38
>prophage 12
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	144522	149477	2571633		Salmonella_phage(50.0%)	4	NA	NA
WP_002492199.1|144522_145728_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.6	3.9e-33
WP_002492240.1|146168_146720_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002492268.1|146852_147500_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_002492207.1|147512_149477_+	DHA2 family efflux MFS transporter permease subunit	NA	A0A2H4PQR6	Staphylococcus_phage	23.3	9.6e-05
>prophage 13
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	161964	162846	2571633		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_002492203.1|161964_162846_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	45.9	1.7e-65
>prophage 14
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	184317	188376	2571633		Staphylococcus_virus(33.33%)	5	NA	NA
WP_037540584.1|184317_185091_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	40.6	4.1e-36
WP_002492284.1|185758_186712_-	2-hydroxyacid dehydrogenase family protein	NA	M1NSB9	Streptococcus_phage	33.5	2.7e-29
WP_002460119.1|186780_187095_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_002460118.1|187094_187427_-	multidrug resistance protein SMR	NA	NA	NA	NA	NA
WP_002492259.1|187839_188376_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	38.3	6.2e-07
>prophage 15
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	197821	199915	2571633	protease	Enterobacteria_phage(100.0%)	1	NA	NA
WP_002492254.1|197821_199915_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	36.9	2.5e-112
>prophage 16
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	207479	208085	2571633		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_002460098.1|207479_208085_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.0	3.8e-13
>prophage 17
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	219442	227688	2571633		Leptospira_phage(50.0%)	6	NA	NA
WP_096801197.1|219442_222628_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.8	2.0e-60
WP_002492245.1|222707_223025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002460077.1|223087_223255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037540574.1|223391_224303_+	AEC family transporter	NA	NA	NA	NA	NA
WP_002492206.1|224517_225402_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002478828.1|225552_227688_+	DNA topoisomerase III	NA	R4TFQ7	Phaeocystis_globosa_virus	25.9	5.3e-17
>prophage 18
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	244350	246014	2571633		Bacillus_virus(50.0%)	2	NA	NA
WP_002492265.1|244350_245160_+	energy-coupling factor transporter ATPase	NA	G3M9Y6	Bacillus_virus	30.0	2.0e-17
WP_002492276.1|245156_246014_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.4	1.9e-10
>prophage 19
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	249946	250837	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002460037.1|249946_250837_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.3	4.2e-32
>prophage 20
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	254701	280934	2571633		Tupanvirus(80.0%)	8	NA	NA
WP_002492248.1|254701_261826_+	lugdunin non-ribosomal peptide synthetase LugA	NA	A0A2K9L3I8	Tupanvirus	26.0	1.9e-58
WP_081094477.1|261815_266036_+	AMP-binding protein	NA	A0A2K9KZV5	Tupanvirus	24.8	1.1e-53
WP_037540567.1|266053_274867_+	lugdunin non-ribosomal peptide synthetase LugC	NA	A0A2K9KZV5	Tupanvirus	24.3	1.1e-47
WP_002460022.1|274863_275550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478846.1|275587_277327_+	lugdunin non-ribosomal peptide synthetase LugD	NA	A0A2K9KZV5	Tupanvirus	25.3	6.4e-45
WP_002478847.1|277334_277988_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_002492211.1|279240_279900_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_172412352.1|280196_280934_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.8	2.9e-15
>prophage 21
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	287098	288511	2571633		Pandoravirus(100.0%)	1	NA	NA
WP_094449185.1|287098_288511_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.7	5.0e-48
>prophage 22
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	320062	321868	2571633		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002478930.1|320062_321868_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	40.0	4.0e-98
>prophage 23
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	331398	334836	2571633		Clostridium_phage(50.0%)	4	NA	NA
WP_002492357.1|331398_331845_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	51.4	7.4e-38
WP_002461274.1|331922_332633_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_002492354.1|332811_333474_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_002492356.1|333534_334836_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	2.2e-135
>prophage 24
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	346658	348266	2571633		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_002478950.1|346658_348266_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	6.0e-146
>prophage 25
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	355646	361592	2571633		Bacillus_virus(33.33%)	7	NA	NA
WP_002478955.1|355646_356246_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	44.6	2.5e-33
WP_002461245.1|356245_357322_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_002478956.1|357308_358148_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_002478957.1|358235_359270_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	43.1	1.4e-42
WP_002492355.1|359275_359698_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_002492358.1|359806_360331_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_002492366.1|360353_361592_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.9	8.5e-100
>prophage 26
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	373609	378557	2571633		Bacillus_phage(50.0%)	3	NA	NA
WP_037540683.1|373609_375364_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	2.9e-21
WP_002461221.1|377513_377966_-	YwpF-like family protein	NA	NA	NA	NA	NA
WP_002461219.1|378155_378557_+	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	34.7	4.2e-16
>prophage 27
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	384429	385071	2571633		Golden_Marseillevirus(100.0%)	1	NA	NA
WP_002492092.1|384429_385071_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.5	2.9e-11
>prophage 28
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	392229	393744	2571633		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_002461201.1|392229_393744_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.6	1.2e-58
>prophage 29
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	397005	401836	2571633		Yellowstone_lake_mimivirus(33.33%)	7	NA	NA
WP_002492086.1|397005_398154_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.4	5.2e-27
WP_002461193.1|398240_398411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002461192.1|398407_398758_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	33.3	8.2e-08
WP_002461191.1|399191_400193_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_002461190.1|400283_400610_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_002492094.1|400611_401091_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_002461188.1|401065_401836_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.6	3.2e-20
>prophage 30
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	415751	420424	2571633		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_002492313.1|415751_417302_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.2	8.6e-09
WP_002477911.1|417323_418328_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_002461439.1|418460_418694_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_002492300.1|418690_420424_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	32.6	7.8e-67
>prophage 31
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	424129	429388	2571633	tRNA	Moraxella_phage(33.33%)	3	NA	NA
WP_002477915.1|424129_425152_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.5	5.2e-63
WP_002492307.1|425476_427090_-	MutS family DNA mismatch repair protein	NA	A0A1B1IS82	uncultured_Mediterranean_phage	28.5	2.4e-17
WP_002492298.1|427444_429388_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2H4UUX5	Bodo_saltans_virus	29.0	2.6e-50
>prophage 32
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	434631	437899	2571633		Bacillus_phage(50.0%)	3	NA	NA
WP_002492299.1|434631_436116_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	24.4	9.1e-16
WP_002492304.1|436116_437091_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_002461418.1|437182_437899_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	31.0	1.5e-24
>prophage 33
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	445146	458319	2571633	terminase,integrase	Staphylococcus_phage(62.5%)	20	447096:447115	460925:460944
WP_002461410.1|445146_445431_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	45.2	1.2e-12
WP_002461409.1|445490_447113_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.4	3.1e-158
447096:447115	attL	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
WP_002492309.1|447181_448354_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.4	3.9e-219
WP_002445345.1|448367_449042_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	2.7e-39
WP_000153640.1|449214_449433_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_002445364.1|449437_449755_+	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	97.1	2.7e-50
WP_002445365.1|449751_449898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058489.1|449890_450100_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	98.6	1.6e-30
WP_002445368.1|450102_450426_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	88.9	6.7e-49
WP_002445370.1|450489_451359_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	94.5	1.2e-161
WP_002445371.1|451372_453082_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	1.2e-301
WP_002445372.1|453429_453795_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	81.8	2.7e-54
WP_002492310.1|453808_454450_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	74.2	3.0e-88
WP_002445374.1|454737_455082_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	86.8	2.7e-48
WP_002492317.1|455095_455329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002445376.1|455340_455862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002445377.1|455924_456497_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	72.1	1.4e-73
WP_002492698.1|456776_457286_+	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	37.4	3.8e-22
WP_002445379.1|457278_457887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080047653.1|458070_458319_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	51.8	1.8e-17
460925:460944	attR	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
>prophage 34
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	464026	466468	2571633		Staphylococcus_phage(100.0%)	3	NA	NA
WP_002492705.1|464026_464914_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.7	9.9e-18
WP_002492693.1|464910_465576_+	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_002461399.1|465595_466468_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.8	6.8e-27
>prophage 35
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	476606	477692	2571633		Bacillus_phage(100.0%)	1	NA	NA
WP_002492718.1|476606_477692_+	pectate lyase	NA	U5PWM6	Bacillus_phage	31.7	2.1e-41
>prophage 36
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	481986	492224	2571633		Bacillus_virus(40.0%)	9	NA	NA
WP_002492724.1|481986_483456_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.2	1.1e-111
WP_002477939.1|483448_484288_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.1e-63
WP_002477940.1|484361_484964_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_002492702.1|484944_485124_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_002477941.1|485499_486795_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.2	2.7e-16
WP_002461369.1|486890_487193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492712.1|487332_488025_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_002492700.1|488024_490217_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.0	3.9e-132
WP_002492735.1|490220_492224_+	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	36.6	1.0e-110
>prophage 37
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	499839	505326	2571633		Catovirus(33.33%)	6	NA	NA
WP_002492714.1|499839_500838_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	26.1	5.0e-18
WP_172412338.1|500935_502306_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	42.1	5.0e-101
WP_096801198.1|502480_503029_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_002492730.1|503130_503436_+	TfoX/Sxy family protein	NA	NA	NA	NA	NA
WP_002492706.1|503477_504557_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_094449197.1|504771_505326_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	38.9	2.9e-31
>prophage 38
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	528691	532376	2571633		Aeropyrum_pernix_spindle-shaped_virus(50.0%)	3	NA	NA
WP_012990801.1|528691_529741_+	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	31.8	9.0e-26
WP_002461312.1|529838_530381_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_002492716.1|530639_532376_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.2	2.5e-49
>prophage 39
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	549110	549836	2571633		Planktothrix_phage(100.0%)	1	NA	NA
WP_002477975.1|549110_549836_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.5	2.4e-38
>prophage 40
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	559847	560192	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_002458766.1|559847_560192_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 41
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	570455	571193	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_096801200.1|570455_571193_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.3	1.8e-20
>prophage 42
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	579184	609438	2571633	tRNA	Staphylococcus_phage(96.0%)	31	NA	NA
WP_002492603.1|579184_580579_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.1e-169
WP_002492644.1|580585_581590_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
WP_002458786.1|581586_581844_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
WP_002492634.1|582363_583137_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	5.0e-98
WP_002492597.1|583200_584793_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	85.8	1.5e-274
WP_002458790.1|585164_586361_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
WP_002458791.1|586459_587368_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
WP_002492600.1|587482_588316_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	72.9	2.1e-118
WP_002478001.1|588500_588854_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_002478002.1|588850_589216_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
WP_002478003.1|589284_589590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002458796.1|589846_590560_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
WP_002458797.1|590690_591143_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
WP_002492607.1|591123_591570_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002478005.1|591585_592056_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
WP_002458800.1|592253_592478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458801.1|592679_593534_+	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
WP_002492594.1|593917_595417_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
WP_002492592.1|595728_596835_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.6	4.9e-123
WP_002458804.1|596842_597475_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
WP_002478008.1|597487_598669_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.9e-174
WP_002458806.1|598681_599140_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
WP_002492647.1|599217_600204_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	7.2e-134
WP_002458808.1|600420_601254_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002458809.1|601748_602150_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458810.1|602200_602764_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
WP_002492612.1|602760_603714_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	4.1e-70
WP_002492648.1|603817_604993_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.8	1.4e-176
WP_002492652.1|605314_607729_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
WP_002458814.1|607747_608059_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
WP_002492605.1|608178_609438_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	84.5	5.7e-43
>prophage 43
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	619861	625119	2571633		Indivirus(33.33%)	4	NA	NA
WP_002492628.1|619861_620173_+	thioredoxin family protein	NA	A0A1V0SD63	Indivirus	34.6	8.0e-07
WP_002458828.1|620267_621128_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	86.1	9.8e-63
WP_037540620.1|621153_621750_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_037540619.1|621771_625119_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	46.4	2.8e-81
>prophage 44
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	634359	636069	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002492599.1|634359_636069_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	86.8	2.4e-246
>prophage 45
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	639548	642510	2571633	tRNA	Serratia_phage(50.0%)	2	NA	NA
WP_002458844.1|639548_640811_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	42.1	6.0e-85
WP_002492617.1|641286_642510_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	30.1	2.8e-10
>prophage 46
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	646760	651070	2571633		Staphylococcus_phage(50.0%)	4	NA	NA
WP_002492639.1|646760_648380_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	47.4	7.1e-54
WP_002492640.1|648369_649530_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_002458853.1|649798_650245_-	SACOL1771 family peroxiredoxin	NA	NA	NA	NA	NA
WP_002458854.1|650323_651070_+	hypothetical protein	NA	A0A0S2MYI4	Enterococcus_phage	30.0	8.6e-15
>prophage 47
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	654624	655758	2571633		Faustovirus(100.0%)	1	NA	NA
WP_002492654.1|654624_655758_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.1	6.3e-25
>prophage 48
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	667836	671031	2571633		Streptomyces_phage(100.0%)	1	NA	NA
WP_037540548.1|667836_671031_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	31.0	2.5e-135
>prophage 49
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	675505	678050	2571633	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
WP_002478049.1|675505_677266_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	76.7	1.4e-31
WP_062248820.1|677567_678050_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.8	1.7e-19
>prophage 50
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	682895	689157	2571633		Feldmannia_irregularis_virus(25.0%)	4	NA	NA
WP_037540804.1|682895_683606_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	1.7e-07
WP_002458881.1|683605_685315_+	PAS domain-containing protein	NA	A0A1V0SGX0	Hokovirus	28.6	4.0e-23
WP_002493149.1|685634_688268_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.8	3.6e-47
WP_002493150.1|688284_689157_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	38.0	7.7e-39
>prophage 51
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	694269	705584	2571633	protease,tRNA	Brevibacillus_phage(20.0%)	10	NA	NA
WP_002458889.1|694269_695190_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	30.4	6.7e-33
WP_002493141.1|695549_697487_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.8	8.3e-118
WP_002493144.1|697950_699444_+	amino acid permease	NA	NA	NA	NA	NA
WP_002478060.1|699655_700183_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	8.2e-12
WP_002458894.1|700211_700412_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002458895.1|700459_700816_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002492922.1|701095_701707_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	36.7	3.0e-21
WP_002458897.1|701723_702647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458898.1|702810_704118_+	trigger factor	NA	NA	NA	NA	NA
WP_002458899.1|704321_705584_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.3	5.0e-140
>prophage 52
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	714815	717446	2571633	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_037540796.1|714815_717446_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	40.7	4.0e-155
>prophage 53
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	726809	760941	2571633	tRNA	uncultured_Mediterranean_phage(18.75%)	29	NA	NA
WP_002478078.1|726809_727814_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
WP_002492120.1|727816_728842_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002458926.1|728860_730000_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	5.4e-85
WP_002458927.1|730018_730279_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
WP_037540792.1|730464_732753_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
WP_037540789.1|733025_735302_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	3.3e-65
WP_002458930.1|735321_735840_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
WP_002492194.1|736099_738289_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.1	1.8e-12
WP_002458932.1|738304_738757_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002492192.1|738753_739629_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	35.4	5.6e-13
WP_002478086.1|739963_741223_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_037540787.1|741245_743012_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	23.1	4.7e-19
WP_002458936.1|743399_744191_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_002492916.1|744222_745491_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.0	2.0e-104
WP_002458938.1|745574_745997_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458939.1|746106_746247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458940.1|746447_747449_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002492915.1|747678_748821_+	cysteine desulfurase	NA	A0A141ZJV0	Faustovirus	29.5	6.8e-27
WP_002492894.1|748820_749933_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_002492893.1|750074_750746_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_002492901.1|750747_753135_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	28.6	1.2e-65
WP_037540786.1|753402_756033_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.5	2.5e-64
WP_002458946.1|756098_756359_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002458947.1|756362_756791_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002458948.1|756803_757112_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_037540784.1|757473_758115_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_002458950.1|758111_759035_+	U32 family peptidase	NA	Q6DW11	Phage_TP	29.3	1.2e-18
WP_002478095.1|759046_760315_+	U32 family peptidase	NA	Q6DW11	Phage_TP	30.8	2.0e-35
WP_002458952.1|760314_760941_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.6	3.7e-35
>prophage 54
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	774376	780561	2571633		Bacillus_phage(33.33%)	5	NA	NA
WP_002458970.1|774376_774838_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	55.4	5.1e-34
WP_002492921.1|774843_777045_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	33.5	3.1e-28
WP_002478106.1|777111_778086_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_002458974.1|778132_778381_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_002478107.1|778737_780561_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	40.1	1.5e-20
>prophage 55
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	783653	786824	2571633		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_037540775.1|783653_785489_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	47.4	3.6e-139
WP_002478111.1|785690_786824_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.2	2.5e-29
>prophage 56
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	793386	794337	2571633		Erwinia_phage(100.0%)	1	NA	NA
WP_037540771.1|793386_794337_+	PhoH family protein	NA	W8D063	Erwinia_phage	42.1	1.9e-46
>prophage 57
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	797360	810988	2571633	tRNA	Catovirus(14.29%)	13	NA	NA
WP_002478117.1|797360_798752_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SAN4	Catovirus	27.3	4.7e-46
WP_014533295.1|799075_799699_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002458996.1|799712_800531_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002478118.1|800591_802406_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	8.7e-53
WP_002458998.1|802698_803805_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.8e-37
WP_037540768.1|803873_804563_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002491917.1|804552_805653_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002459001.1|805689_807033_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	8.5e-53
WP_002491914.1|807042_807933_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.1	4.0e-27
WP_172412353.1|808028_808820_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.5	1.6e-19
WP_002491919.1|808898_809738_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002459005.1|809740_810160_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_002459006.1|810385_810988_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	51.7	4.8e-56
>prophage 58
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	823384	826199	2571633		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_002478134.1|823384_824734_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	37.9	1.0e-61
WP_002478135.1|824723_826199_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3ST28	Prochlorococcus_phage	42.0	5.6e-82
>prophage 59
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	833786	835124	2571633		Klosneuvirus(100.0%)	1	NA	NA
WP_002491920.1|833786_835124_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.0	4.5e-38
>prophage 60
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	839787	841212	2571633		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002491913.1|839787_841212_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.1	1.7e-35
>prophage 61
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	846169	849696	2571633	transposase	Lactococcus_phage(33.33%)	4	NA	NA
WP_062248827.1|846169_846652_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.1	8.3e-19
WP_014533303.1|846838_846934_-	stressosome-associated protein Prli42	NA	NA	NA	NA	NA
WP_002492590.1|847089_848214_+	M20/M25/M40 family metallo-hydrolase	NA	A0A0K2CPK3	Brevibacillus_phage	27.9	1.2e-07
WP_037540401.1|848289_849696_+	NADP-dependent phosphogluconate dehydrogenase	NA	E3SJC4	Synechococcus_phage	31.2	1.2e-30
>prophage 62
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	853910	855395	2571633		Cyanophage(100.0%)	1	NA	NA
WP_002478153.1|853910_855395_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	38.3	1.6e-81
>prophage 63
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	860964	871168	2571633		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002478160.1|860964_861852_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	32.1	1.1e-37
WP_002478161.1|861864_862380_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_002459061.1|862473_863205_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
WP_002492337.1|863197_863731_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	4.6e-10
WP_002478163.1|863733_864471_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002459064.1|864621_865347_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
WP_002492342.1|865330_867079_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	1.5e-20
WP_002478165.1|867799_868342_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|868483_868732_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_002492332.1|868842_869802_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002459069.1|869788_871168_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 64
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	881374	884777	2571633		Bacillus_phage(33.33%)	5	NA	NA
WP_002478172.1|881374_881647_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	72.2	6.1e-27
WP_002478173.1|881922_882489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492336.1|882501_883227_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_002478175.1|883228_884185_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.2	5.3e-09
WP_002492333.1|884327_884777_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	45.4	2.0e-30
>prophage 65
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	893569	900705	2571633	tRNA	Bacillus_virus(25.0%)	5	NA	NA
WP_002492330.1|893569_894772_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	33.6	4.9e-28
WP_002478183.1|894758_895730_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_002492100.1|895753_898435_+	3'-5' exoribonuclease	NA	A0A127AW80	Bacillus_phage	23.4	4.5e-29
WP_002459095.1|898542_899835_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	29.9	9.6e-54
WP_002459096.1|900018_900705_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	30.9	4.2e-08
>prophage 66
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	903974	905748	2571633		Geobacillus_phage(50.0%)	3	NA	NA
WP_002459100.1|903974_904601_-	Holliday junction resolvase RecU	NA	Q0H273	Geobacillus_phage	32.0	1.1e-15
WP_002478186.1|904850_905192_+	DUF1798 family protein	NA	NA	NA	NA	NA
WP_002459102.1|905193_905748_+	DUF1273 domain-containing protein	NA	U5J9F7	Bacillus_phage	27.2	2.2e-07
>prophage 67
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	912303	917816	2571633		Acinetobacter_phage(75.0%)	5	NA	NA
WP_002459107.1|912303_913185_+	5'-3' exonuclease	NA	A0A0N7ACJ6	Bacillus_phage	36.2	2.0e-39
WP_002459108.1|914055_915459_+	anthranilate synthase component I	NA	NA	NA	NA	NA
WP_002491878.1|915455_916022_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	34.7	2.4e-25
WP_002478193.1|916029_917031_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	32.6	2.1e-32
WP_002478194.1|917030_917816_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	37.2	3.8e-29
>prophage 68
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	926866	930309	2571633		Streptococcus_phage(50.0%)	3	NA	NA
WP_002492889.1|926866_928675_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	44.8	2.4e-143
WP_002459122.1|928753_929404_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_002459123.1|929409_930309_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.8	7.2e-16
>prophage 69
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	934697	936299	2571633		Klosneuvirus(100.0%)	1	NA	NA
WP_002459128.1|934697_936299_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	1.6e-50
>prophage 70
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	944224	950280	2571633	lysis	Yellowstone_lake_phycodnavirus(33.33%)	7	NA	NA
WP_002492782.1|944224_945490_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	22.5	9.8e-11
WP_080679162.1|946104_946923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002433901.1|947326_947527_-	cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	66.2	6.5e-18
WP_002492780.1|947731_948040_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_002459142.1|948207_948477_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002478214.1|948492_949116_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_002492771.1|949140_950280_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.8	2.7e-28
>prophage 71
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	953711	954503	2571633		Halovirus(100.0%)	1	NA	NA
WP_002478216.1|953711_954503_-	MoxR family ATPase	NA	R4TG24	Halovirus	27.9	3.6e-11
>prophage 72
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	961663	973701	2571633		Staphylococcus_phage(50.0%)	16	NA	NA
WP_002459153.1|961663_962323_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	2.1e-36
WP_002492773.1|962990_963614_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002459156.1|963628_964702_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002459157.1|964719_965223_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002459158.1|965238_966690_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	29.1	1.8e-24
WP_002492786.1|966858_967080_-	YozE family protein	NA	NA	NA	NA	NA
WP_002492789.1|967079_967580_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002459161.1|967592_968021_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002459162.1|968013_968541_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002459163.1|968629_969469_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	73.6	5.1e-48
WP_002459164.1|969954_970440_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	2.2e-72
WP_002478224.1|970480_971437_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	79.2	2.3e-153
WP_002492665.1|971630_972068_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_002459167.1|972300_972555_-	NifU N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_002459168.1|972565_972760_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_002492666.1|972996_973701_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	22.7	1.3e-09
>prophage 73
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	984827	986090	2571633		Bacillus_phage(100.0%)	1	NA	NA
WP_002459182.1|984827_986090_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	45.8	1.2e-96
>prophage 74
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	996480	1000874	2571633		Bacillus_virus(100.0%)	2	NA	NA
WP_002491897.1|996480_998883_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.9	6.1e-102
WP_161510815.1|998879_1000874_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	5.0e-118
>prophage 75
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1006170	1007811	2571633		Vibrio_phage(100.0%)	1	NA	NA
WP_002459199.1|1006170_1007811_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.6	7.7e-24
>prophage 76
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1011535	1012660	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002478241.1|1011535_1012660_-	exonuclease SbcCD subunit D	NA	A1YTR7	Staphylococcus_phage	25.0	1.8e-08
>prophage 77
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1016973	1022153	2571633		Phage_Wrath(33.33%)	6	NA	NA
WP_002459208.1|1016973_1017597_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	7.7e-17
WP_002478244.1|1017810_1018836_-	CAP domain-containing protein	NA	NA	NA	NA	NA
WP_002459210.1|1018847_1019825_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	90.5	1.0e-169
WP_002492006.1|1019988_1020258_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002459212.1|1020418_1020568_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002478245.1|1020647_1022153_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.1	1.1e-88
>prophage 78
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1032319	1032862	2571633		Bacillus_phage(100.0%)	1	NA	NA
WP_002492004.1|1032319_1032862_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	45.0	1.7e-20
>prophage 79
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1036045	1036918	2571633		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_002492670.1|1036045_1036918_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	32.1	9.4e-21
>prophage 80
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1044936	1045413	2571633		Fowlpox_virus(100.0%)	1	NA	NA
WP_002459237.1|1044936_1045413_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	37.6	1.1e-23
>prophage 81
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1051364	1057600	2571633		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_002459244.1|1051364_1052183_-	aquaporin family protein	NA	M1HH19	Acanthocystis_turfacea_Chlorella_virus	39.6	8.8e-37
WP_002459245.1|1052512_1053046_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_037540362.1|1053060_1054974_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.8	3.1e-64
WP_037540359.1|1054990_1057600_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	24.8	3.4e-42
>prophage 82
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1060745	1061366	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_037540357.1|1060745_1061366_-	poly-gamma-glutamate hydrolase family protein	NA	A0A0D3MVF0	Staphylococcus_phage	42.9	1.4e-42
>prophage 83
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1068015	1069062	2571633		Bacillus_phage(100.0%)	1	NA	NA
WP_002478267.1|1068015_1069062_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	68.5	1.2e-123
>prophage 84
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1073191	1078931	2571633		Bodo_saltans_virus(33.33%)	4	NA	NA
WP_002491845.1|1073191_1074484_-	insulinase family protein	NA	A0A2H4UVM3	Bodo_saltans_virus	27.1	1.7e-05
WP_002478270.1|1074476_1075745_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	28.9	8.3e-42
WP_002459267.1|1075823_1076558_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002491846.1|1076561_1078931_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.2	1.1e-82
>prophage 85
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1086334	1095210	2571633		Cafeteria_roenbergensis_virus(50.0%)	6	NA	NA
WP_002478274.1|1086334_1088491_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.0	5.9e-24
WP_002459276.1|1088495_1088813_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_037540354.1|1088809_1089094_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002459278.1|1089111_1090275_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002478277.1|1090295_1090763_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_096801220.1|1090899_1095210_-	PolC-type DNA polymerase III	NA	A0A1X9I5C8	Streptococcus_phage	38.9	2.1e-20
>prophage 86
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1102639	1103401	2571633		Flavobacterium_phage(100.0%)	1	NA	NA
WP_002478281.1|1102639_1103401_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	40.0	4.7e-24
>prophage 87
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1108024	1114477	2571633	tRNA,protease	Erwinia_phage(33.33%)	5	NA	NA
WP_002478282.1|1108024_1109428_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.7	6.2e-30
WP_002459292.1|1109474_1110017_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_002491833.1|1110017_1110911_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.8	2.1e-28
WP_002459294.1|1111042_1112350_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_172412355.1|1112401_1114477_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	3.2e-107
>prophage 88
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1117572	1120547	2571633		Tupanvirus(50.0%)	3	NA	NA
WP_002478289.1|1117572_1118481_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	34.2	1.7e-17
WP_002493081.1|1118502_1119669_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_002493079.1|1119779_1120547_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.1	2.1e-24
>prophage 89
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1132946	1133363	2571633	transposase	Lactococcus_phage(100.0%)	1	NA	NA
WP_062248851.1|1132946_1133363_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.8	1.1e-19
>prophage 90
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1140173	1142174	2571633		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_002459316.1|1140173_1140905_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	30.3	1.2e-24
WP_001830184.1|1141023_1141257_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_002459317.1|1141439_1142174_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.6	1.7e-18
>prophage 91
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1152168	1154172	2571633		Indivirus(100.0%)	1	NA	NA
WP_002492935.1|1152168_1154172_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	33.9	4.7e-23
>prophage 92
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1157319	1158252	2571633	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002493087.1|1157319_1158252_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	29.2	1.6e-10
>prophage 93
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1161492	1163754	2571633		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_002493097.1|1161492_1162692_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.5	2.4e-38
WP_002459336.1|1162918_1163131_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002459337.1|1163130_1163754_-	guanylate kinase	NA	A0A0M5KCK5	Mollivirus	38.9	1.4e-10
>prophage 94
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1166807	1167419	2571633		Pandoravirus(100.0%)	1	NA	NA
WP_002459341.1|1166807_1167419_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	32.8	4.4e-25
>prophage 95
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1171454	1176061	2571633		Halovirus(33.33%)	4	NA	NA
WP_002493107.1|1171454_1172555_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.3	9.6e-63
WP_002493090.1|1172556_1173831_-	dihydroorotase	NA	NA	NA	NA	NA
WP_037540419.1|1173830_1174727_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HQL8	Paramecium_bursaria_Chlorella_virus	30.9	1.1e-27
WP_002459347.1|1174750_1176061_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.9	9.7e-54
>prophage 96
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1180065	1182816	2571633	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_002493088.1|1180065_1182816_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	27.6	2.4e-86
>prophage 97
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1202397	1202979	2571633		Cassava_brown_streak_virus(100.0%)	1	NA	NA
WP_002459373.1|1202397_1202979_-	XTP/dITP diphosphatase	NA	D2KCJ6	Cassava_brown_streak_virus	34.2	1.8e-15
>prophage 98
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1209678	1214229	2571633		Staphylococcus_phage(33.33%)	3	NA	NA
WP_002459379.1|1209678_1209993_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	49.5	1.6e-26
WP_002493099.1|1210155_1212507_-	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	39.8	1.0e-13
WP_002493100.1|1212516_1214229_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	23.5	1.9e-17
>prophage 99
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1219178	1220237	2571633	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_002493102.1|1219178_1220237_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	36.3	1.8e-29
>prophage 100
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1223765	1226603	2571633		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_002459391.1|1223765_1224248_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.4	9.2e-26
WP_002478348.1|1224240_1224792_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_002478349.1|1224860_1225250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459394.1|1225266_1225518_-	DUF2129 domain-containing protein	NA	NA	NA	NA	NA
WP_002493085.1|1225676_1226603_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.2	7.7e-13
>prophage 101
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1238543	1240391	2571633		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002459409.1|1238543_1240391_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	24.2	4.8e-22
>prophage 102
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1248729	1257703	2571633		Synechococcus_phage(50.0%)	9	NA	NA
WP_002478364.1|1248729_1249824_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.0	3.7e-38
WP_002459420.1|1249838_1250378_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002493056.1|1250706_1250994_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_002493058.1|1251197_1252604_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.8	3.5e-49
WP_002478366.1|1252607_1253912_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_002459424.1|1254124_1255102_-	alpha-ketoacid dehydrogenase subunit beta	NA	E3SJ83	Synechococcus_phage	25.5	3.9e-07
WP_002459425.1|1255105_1256218_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_002493071.1|1256384_1257014_-	YkyA family protein	NA	NA	NA	NA	NA
WP_002493063.1|1257151_1257703_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	1.9e-14
>prophage 103
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1265736	1266909	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_002493070.1|1265736_1266909_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.1	2.2e-73
>prophage 104
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1270187	1285008	2571633		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_002459442.1|1270187_1271591_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	28.6	5.2e-13
WP_002459443.1|1271583_1272393_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_012990886.1|1272706_1273954_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_002459445.1|1273976_1275455_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.7	7.3e-74
WP_002492152.1|1275470_1276037_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
WP_002478378.1|1276036_1277068_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	8.7e-66
WP_037540539.1|1277060_1278545_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	3.2e-45
WP_002478379.1|1278523_1280713_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
WP_002478380.1|1280705_1281377_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002459451.1|1281378_1281639_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002478381.1|1281638_1282343_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
WP_002492672.1|1282343_1283471_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002478383.1|1283457_1283940_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
WP_002459455.1|1284150_1285008_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	40.2	2.6e-39
>prophage 105
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1297057	1300870	2571633		Staphylococcus_virus(100.0%)	1	NA	NA
WP_002492671.1|1297057_1300870_+	SH3-like domain-containing protein	NA	Q4ZE13	Staphylococcus_virus	45.8	5.4e-52
>prophage 106
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1311646	1312948	2571633	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_037540755.1|1311646_1312948_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	9.1e-44
>prophage 107
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1322669	1327513	2571633	protease	uncultured_Mediterranean_phage(33.33%)	3	NA	NA
WP_037540868.1|1322669_1324646_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	24.7	1.9e-13
WP_002492869.1|1324845_1325643_-	TerC family protein	NA	S5MAL1	Bacillus_phage	39.6	9.2e-31
WP_002492862.1|1325950_1327513_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.8	9.9e-37
>prophage 108
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1346431	1348240	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_002459511.1|1346431_1348240_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	25.3	1.0e-48
>prophage 109
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1354816	1356830	2571633		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_002459519.1|1354816_1355758_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.6	2.1e-05
WP_002493134.1|1355747_1356830_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	1.3e-19
>prophage 110
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1362290	1364900	2571633		Escherichia_phage(100.0%)	1	NA	NA
WP_037540861.1|1362290_1364900_-	ATP-dependent chaperone ClpB	NA	A0A1C3S747	Escherichia_phage	33.2	1.0e-118
>prophage 111
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1369850	1373501	2571633		Bacillus_virus(100.0%)	1	NA	NA
WP_002493135.1|1369850_1373501_-	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	22.5	4.1e-17
>prophage 112
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1390167	1390761	2571633		Aureococcus_anophage(100.0%)	1	NA	NA
WP_002459548.1|1390167_1390761_-	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	38.3	3.3e-25
>prophage 113
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1400458	1409679	2571633		Bacillus_phage(50.0%)	6	NA	NA
WP_002491935.1|1400458_1401937_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	35.3	6.7e-51
WP_002491937.1|1402152_1403361_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002491940.1|1403644_1404682_-	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002491930.1|1404682_1406416_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.0	7.6e-30
WP_002491931.1|1406440_1408195_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	1.4e-36
WP_002491928.1|1408218_1409679_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.4	2.3e-11
>prophage 114
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1416560	1422584	2571633		Tupanvirus(100.0%)	1	NA	NA
WP_002491938.1|1416560_1422584_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	28.2	6.7e-41
>prophage 115
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1425851	1426211	2571633		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_037540859.1|1425851_1426211_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 116
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1430354	1433023	2571633		Pseudomonas_phage(50.0%)	2	NA	NA
WP_002459581.1|1430354_1431569_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.3	3.8e-20
WP_002459582.1|1431565_1433023_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	27.4	8.6e-35
>prophage 117
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1461614	1466060	2571633		Mycobacterium_phage(100.0%)	1	NA	NA
WP_192941092.1|1461614_1466060_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	20.5	1.8e-22
>prophage 118
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1477342	1478584	2571633		environmental_halophage(100.0%)	1	NA	NA
WP_002459625.1|1477342_1478584_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.5	6.9e-118
>prophage 119
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1485433	1497837	2571633		Planktothrix_phage(16.67%)	21	NA	NA
WP_002479303.1|1485433_1486459_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	3.6e-27
WP_002459654.1|1486707_1487007_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002493035.1|1486999_1487386_-	topiosmerase	NA	NA	NA	NA	NA
WP_002459656.1|1487608_1487989_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_002479305.1|1488113_1488470_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	49.5	3.8e-21
WP_002493033.1|1488612_1488936_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	5.4e-06
WP_002459659.1|1488988_1489528_-	nitroreductase	NA	NA	NA	NA	NA
WP_002459660.1|1489590_1490322_-	type I 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_002459661.1|1490464_1490887_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002479307.1|1491194_1491704_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002459663.1|1491929_1492514_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.8	2.0e-30
WP_002459664.1|1492749_1492992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459665.1|1492983_1493187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459666.1|1493634_1493823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002479309.1|1494069_1494633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459669.1|1495053_1495287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002493049.1|1495493_1496234_+	poly-gamma-glutamate hydrolase family protein	NA	A0A2H4IZ42	uncultured_Caudovirales_phage	39.5	2.6e-40
WP_002493027.1|1496324_1496609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459672.1|1496645_1496864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002493047.1|1496962_1497319_+	DoxX family protein	NA	NA	NA	NA	NA
WP_002479312.1|1497417_1497837_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	59.8	2.2e-36
>prophage 120
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1507066	1508020	2571633		Indivirus(100.0%)	1	NA	NA
WP_002492765.1|1507066_1508020_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.0	1.1e-11
>prophage 121
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1514859	1521016	2571633		Staphylococcus_phage(33.33%)	6	NA	NA
WP_002492746.1|1514859_1515324_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	93.5	1.1e-76
WP_002492752.1|1515345_1517721_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.1	6.6e-93
WP_002479324.1|1517761_1518502_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002459689.1|1518648_1518882_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_002492742.1|1518951_1519413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459691.1|1519702_1521016_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	81.3	4.6e-197
>prophage 122
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1529748	1534694	2571633		Streptococcus_phage(40.0%)	5	NA	NA
WP_002459699.1|1529748_1530336_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	1.3e-53
WP_002459700.1|1530694_1531639_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.3	5.4e-54
WP_002459701.1|1531684_1532692_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.8	3.7e-53
WP_002459702.1|1532688_1533600_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	35.3	1.7e-09
WP_002479331.1|1533755_1534694_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	50.3	1.3e-84
>prophage 123
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1538840	1541675	2571633		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002492758.1|1538840_1541675_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.8	0.0e+00
>prophage 124
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1550839	1559099	2571633		Streptococcus_phage(40.0%)	8	NA	NA
WP_002492749.1|1550839_1551619_-	peptidoglycan recognition protein	NA	X4YES5	Lactococcus_phage	27.9	1.4e-07
WP_002479342.1|1552035_1552608_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_002459717.1|1552666_1553341_-	ComF family protein	NA	NA	NA	NA	NA
WP_037540531.1|1553303_1554629_-	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	31.2	8.6e-42
WP_002459719.1|1554689_1555556_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	39.4	1.9e-13
WP_002492755.1|1555953_1556595_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.1	4.9e-35
WP_037540533.1|1556647_1557706_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002459722.1|1558025_1559099_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.1	8.6e-16
>prophage 125
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1568905	1599531	2571633	transposase	uncultured_Caudovirales_phage(36.84%)	24	NA	NA
WP_002492142.1|1568905_1569688_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.7	1.5e-14
WP_037540663.1|1569684_1570644_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	3.2e-06
WP_002492143.1|1570624_1571602_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
WP_002492141.1|1572162_1573197_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002492145.1|1573311_1574094_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.1	1.7e-16
WP_002459739.1|1574090_1575050_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
WP_002459740.1|1575030_1576008_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
WP_002459741.1|1576376_1577345_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
WP_002459742.1|1577584_1579690_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002459743.1|1579652_1580051_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
WP_002492137.1|1580924_1581794_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002479355.1|1581806_1582307_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
WP_002492139.1|1582591_1584097_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	1.2e-60
WP_002492138.1|1584423_1585338_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002492147.1|1585641_1586172_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.3e-28
WP_002459751.1|1586409_1587465_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
WP_002459752.1|1587587_1589102_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.0	1.5e-69
WP_002492146.1|1589382_1590897_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_002459754.1|1590893_1591862_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	3.3e-22
WP_002459755.1|1592078_1593860_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.1	4.5e-78
WP_002492134.1|1593873_1595757_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	1.1e-53
WP_002479362.1|1595868_1596684_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_062248851.1|1596896_1597313_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.8	1.1e-19
WP_002479363.1|1597593_1599531_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	37.5	1.2e-105
>prophage 126
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1602729	1609350	2571633		Pandoravirus(16.67%)	8	NA	NA
WP_002459762.1|1602729_1603881_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
WP_002479366.1|1603864_1604461_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
WP_002492964.1|1604796_1605468_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.9	3.6e-68
WP_002459765.1|1605469_1605889_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002459766.1|1605888_1606605_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
WP_002493007.1|1606703_1607294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459768.1|1607334_1608357_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.9	3.2e-60
WP_002492999.1|1608513_1609350_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	1.2e-62
>prophage 127
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1619580	1620963	2571633		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_002492973.1|1619580_1620963_-	deoxyribodipyrimidine photo-lyase	NA	F2Y1K1	Organic_Lake_phycodnavirus	29.7	5.1e-45
>prophage 128
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1629183	1629750	2571633		Enterococcus_phage(100.0%)	1	NA	NA
WP_002479382.1|1629183_1629750_+	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	36.0	2.0e-19
>prophage 129
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1636810	1637278	2571633		Pandoravirus(100.0%)	1	NA	NA
WP_002459798.1|1636810_1637278_-	cupin domain-containing protein	NA	A0A291AU44	Pandoravirus	40.3	1.0e-13
>prophage 130
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1647510	1648272	2571633		Planktothrix_phage(100.0%)	1	NA	NA
WP_002479391.1|1647510_1648272_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	1.0e-34
>prophage 131
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1651794	1652844	2571633		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_002493009.1|1651794_1652844_-	alpha/beta hydrolase	NA	A0A0G2Y6Q1	Acanthamoeba_polyphaga_mimivirus	26.3	4.5e-17
>prophage 132
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1657936	1659981	2571633		Planktothrix_phage(50.0%)	2	NA	NA
WP_002492960.1|1657936_1658734_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.9	1.6e-19
WP_002479397.1|1659147_1659981_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	38.0	3.8e-43
>prophage 133
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1666798	1670848	2571633		Bacillus_phage(50.0%)	3	NA	NA
WP_002479400.1|1666798_1668526_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	40.8	5.9e-107
WP_002459826.1|1668817_1670116_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002459827.1|1670449_1670848_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.2	2.7e-15
>prophage 134
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1676148	1680656	2571633		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_002492941.1|1676148_1677174_+	NAD-dependent formate dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	31.0	4.7e-27
WP_002459835.1|1677318_1678089_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_002492947.1|1678289_1679036_+	M50 family metallopeptidase	NA	NA	NA	NA	NA
WP_002459837.1|1679185_1679833_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_037540836.1|1679954_1680656_+	metal ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.9	1.5e-13
>prophage 135
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1690960	1691518	2571633	integrase	Clostridium_phage(100.0%)	1	1685945:1685958	1692126:1692139
1685945:1685958	attL	TAATAATAATCAAT	NA	NA	NA	NA
WP_002492948.1|1690960_1691518_-|integrase	tyrosine-type recombinase/integrase	integrase	Q8SBK8	Clostridium_phage	34.7	9.3e-22
WP_002492948.1|1690960_1691518_-|integrase	tyrosine-type recombinase/integrase	integrase	Q8SBK8	Clostridium_phage	34.7	9.3e-22
1692126:1692139	attR	ATTGATTATTATTA	NA	NA	NA	NA
>prophage 136
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1695298	1696081	2571633		Mycobacterium_phage(100.0%)	1	NA	NA
WP_037540832.1|1695298_1696081_-	alpha/beta hydrolase	NA	A0A291AV30	Mycobacterium_phage	34.0	8.2e-08
>prophage 137
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1707682	1715463	2571633		Tupanvirus(33.33%)	8	NA	NA
WP_002492995.1|1707682_1708693_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	5.2e-31
WP_002479423.1|1709255_1709762_-	YwhD family protein	NA	NA	NA	NA	NA
WP_002479424.1|1709860_1711159_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.2	3.3e-22
WP_002459873.1|1711224_1711704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_037540847.1|1711889_1712435_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002492963.1|1712620_1713559_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_002459876.1|1713713_1714136_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479426.1|1714140_1715463_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	48.2	7.2e-105
>prophage 138
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1727951	1728620	2571633		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_002479436.1|1727951_1728620_-	uracil-DNA glycosylase	NA	U5U481	Elephant_endotheliotropic_herpesvirus	43.2	2.6e-42
>prophage 139
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1733466	1734879	2571633		Burkholderia_virus(100.0%)	1	NA	NA
WP_002459902.1|1733466_1734879_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	34.5	1.5e-60
>prophage 140
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1755356	1756031	2571633		Enterococcus_phage(100.0%)	1	NA	NA
WP_002479451.1|1755356_1756031_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	34.6	2.4e-24
>prophage 141
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1767652	1768843	2571633		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_002479459.1|1767652_1768843_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.4	3.7e-44
>prophage 142
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1772096	1783200	2571633		Streptococcus_phage(33.33%)	6	NA	NA
WP_002479461.1|1772096_1774178_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.7	3.9e-65
WP_001137495.1|1774297_1774768_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_002459933.1|1774838_1775252_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_002492989.1|1775341_1775602_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_161510814.1|1775863_1779460_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.5	1.2e-66
WP_002492996.1|1779645_1783200_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	22.9	1.0e-49
>prophage 143
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1786999	1791820	2571633	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_002459942.1|1786999_1787548_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.9	4.5e-13
WP_002459943.1|1787565_1787760_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_002459944.1|1787853_1787997_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002479466.1|1788093_1788636_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002459946.1|1788746_1789274_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_002459947.1|1789273_1790020_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_037540504.1|1790022_1790418_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_002479468.1|1790419_1791820_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.0e-53
>prophage 144
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1797288	1799748	2571633	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_002492959.1|1797288_1799748_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.0	8.9e-133
>prophage 145
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1804955	1806338	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_002459961.1|1804955_1806338_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	26.0	2.1e-22
>prophage 146
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1818472	1828708	2571633	protease,tRNA	Tupanvirus(16.67%)	9	NA	NA
WP_002491864.1|1818472_1819960_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	39.3	1.2e-92
WP_002491868.1|1820484_1820964_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_002461453.1|1820964_1821330_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_002491860.1|1821307_1822111_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	31.1	5.1e-21
WP_002479495.1|1822333_1823266_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.0	2.9e-108
WP_002461457.1|1823443_1824328_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002461458.1|1824508_1826596_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.3e-112
WP_002461459.1|1826873_1827413_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	31.5	3.1e-14
WP_002461460.1|1827415_1828708_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	M1I2W1	Paramecium_bursaria_Chlorella_virus	22.7	1.2e-06
>prophage 147
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1837996	1840470	2571633		Hokovirus(50.0%)	2	NA	NA
WP_002479488.1|1837996_1838962_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.8	1.4e-46
WP_002491861.1|1839114_1840470_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	36.1	1.1e-31
>prophage 148
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1846110	1849408	2571633	tRNA	Hokovirus(33.33%)	3	NA	NA
WP_002461484.1|1846110_1848084_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.3	4.8e-97
WP_002491867.1|1848312_1849158_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	46.4	1.8e-56
WP_002479480.1|1849159_1849408_-	GIY-YIG nuclease family protein	NA	S6DF82	Invertebrate_iridovirus	44.4	4.4e-08
>prophage 149
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1852968	1853586	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_002491855.1|1852968_1853586_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.7	6.0e-46
>prophage 150
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1868968	1870699	2571633		Streptococcus_virus(100.0%)	1	NA	NA
WP_002492162.1|1868968_1870699_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	39.6	7.5e-54
>prophage 151
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1886645	1897083	2571633		Bacillus_phage(40.0%)	8	NA	NA
WP_002479270.1|1886645_1887617_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7NU10	Lactobacillus_phage	44.6	4.1e-25
WP_002492176.1|1888470_1889310_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_002492153.1|1889341_1890001_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002492178.1|1890003_1891026_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	2.0e-30
WP_002492165.1|1891230_1892973_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	2.9e-37
WP_002461151.1|1892969_1894751_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.4	4.0e-26
WP_002492168.1|1895034_1896180_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_002492154.1|1896186_1897083_-	cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	42.8	1.1e-53
>prophage 152
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1910749	1913886	2571633		Hokovirus(50.0%)	2	NA	NA
WP_002479253.1|1910749_1912291_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	2.8e-23
WP_002492164.1|1912419_1913886_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	1.8e-93
>prophage 153
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1923659	1925183	2571633		Enterococcus_phage(100.0%)	1	NA	NA
WP_002461113.1|1923659_1925183_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	34.5	7.9e-39
>prophage 154
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1932050	1951921	2571633	terminase,integrase	Staphylococcus_phage(43.75%)	27	1930994:1931053	1944075:1944148
1930994:1931053	attL	CAAAACACAAAAACAACCCCATAAGCCTATGCTTACGGGGTTTTATAATAAACTATATAT	NA	NA	NA	NA
WP_002492180.1|1932050_1932398_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	34.9	5.4e-12
WP_001832940.1|1932416_1933034_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_002445377.1|1933668_1934241_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	72.1	1.4e-73
WP_002492317.1|1934835_1935069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002445374.1|1935082_1935427_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	86.8	2.7e-48
WP_002492071.1|1935712_1936354_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	70.4	7.5e-84
WP_002492062.1|1936355_1936877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492057.1|1937201_1938911_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	69.9	1.0e-236
WP_002492075.1|1938924_1939794_-	primase C-terminal domain-containing protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	59.0	6.2e-97
WP_002492064.1|1939887_1940190_-	DUF1474 family protein	NA	A0A2H4JB50	uncultured_Caudovirales_phage	82.8	5.5e-37
WP_002492019.1|1940189_1940609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492040.1|1940598_1940757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492070.1|1940773_1941046_-	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	74.4	7.4e-33
WP_002492076.1|1941046_1941268_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	1.5e-07
WP_002459648.1|1941439_1942012_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002459649.1|1942038_1942731_+	hypothetical protein	NA	A0A1J0MG42	Staphylococcus_phage	38.6	5.7e-29
WP_002492008.1|1942767_1943988_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	80.2	6.3e-180
WP_002461103.1|1944133_1944376_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
1944075:1944148	attR	CAAAACACAAAAACAACCCCATAAGCCTATGCTTACGGGGTTTTATAATAAACTATATATTAGTTTTCTTCTTT	NA	NA	NA	NA
WP_002461102.1|1944422_1944932_-	single-stranded DNA-binding protein	NA	A0A2H4JCF2	uncultured_Caudovirales_phage	79.9	3.8e-62
WP_002461101.1|1944953_1945250_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002461100.1|1945567_1946353_+	lysozyme	NA	A0A291I9H5	Lactobacillus_phage	45.6	6.1e-35
WP_002479240.1|1946414_1946606_+	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	78.3	3.7e-23
WP_002479239.1|1946845_1947943_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002479238.1|1947942_1948158_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_002479237.1|1948175_1949057_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_002492025.1|1949265_1950093_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	38.1	6.4e-11
WP_002479235.1|1950826_1951921_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.2	5.3e-13
>prophage 155
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1962925	1972247	2571633		Bacillus_phage(50.0%)	10	NA	NA
WP_002492046.1|1962925_1963621_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.1	5.9e-34
WP_037540899.1|1963617_1964739_-	RND transporter	NA	NA	NA	NA	NA
WP_002492055.1|1964906_1965323_+	VOC family protein	NA	NA	NA	NA	NA
WP_037540900.1|1965569_1965875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002479225.1|1965911_1966814_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.7	6.8e-14
WP_002492056.1|1966836_1967586_-	membrane protein	NA	NA	NA	NA	NA
WP_002492044.1|1967578_1968493_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.2	1.1e-30
WP_002492051.1|1968583_1969255_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002461076.1|1969533_1970811_+	MFS transporter	NA	NA	NA	NA	NA
WP_037540913.1|1970831_1972247_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	26.4	4.2e-26
>prophage 156
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1975336	1975897	2571633		Streptococcus_phage(100.0%)	1	NA	NA
WP_172412363.1|1975336_1975897_-	GNAT family N-acetyltransferase	NA	D0R097	Streptococcus_phage	22.7	2.7e-05
>prophage 157
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1980227	1980986	2571633		Planktothrix_phage(100.0%)	1	NA	NA
WP_002492014.1|1980227_1980986_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	4.5e-35
>prophage 158
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1985280	1986063	2571633		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_002479212.1|1985280_1986063_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.7	3.4e-22
>prophage 159
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	1992535	1993375	2571633		Gordonia_phage(100.0%)	1	NA	NA
WP_002492074.1|1992535_1993375_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHY8	Gordonia_phage	31.4	3.0e-08
>prophage 160
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2003314	2010751	2571633	tRNA	Bacillus_virus(66.67%)	4	NA	NA
WP_002461035.1|2003314_2005249_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.4	5.7e-143
WP_002492068.1|2005285_2007970_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	36.3	9.4e-120
WP_002461032.1|2008127_2008946_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_002479198.1|2009467_2010751_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.5	8.5e-87
>prophage 161
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2016892	2023356	2571633		Bacillus_phage(50.0%)	4	NA	NA
WP_002461019.1|2016892_2018290_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	49.0	5.8e-113
WP_002492010.1|2018575_2019859_+	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	34.6	3.1e-68
WP_002479194.1|2020818_2021520_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.8	1.7e-41
WP_002461016.1|2021532_2023356_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	30.5	6.1e-30
>prophage 162
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2030947	2031748	2571633		Bacteriophage(100.0%)	1	NA	NA
WP_037540904.1|2030947_2031748_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	36.3	5.4e-39
>prophage 163
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2035498	2036479	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_172412345.1|2035498_2036479_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	54.4	2.3e-84
>prophage 164
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2051606	2061232	2571633		Staphylococcus_phage(50.0%)	4	NA	NA
WP_002492029.1|2051606_2052488_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.7	3.7e-25
WP_165489580.1|2053103_2053268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002460956.1|2053427_2054054_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_096801214.1|2054050_2061232_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	27.3	2.0e-148
>prophage 165
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2075417	2076116	2571633		Bacillus_phage(100.0%)	1	NA	NA
WP_002491992.1|2075417_2076116_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	27.1	3.5e-18
>prophage 166
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2080736	2082758	2571633		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002460930.1|2080736_2082758_+	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.7	8.0e-31
>prophage 167
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2094454	2100169	2571633		uncultured_Caudovirales_phage(66.67%)	6	NA	NA
WP_096801216.1|2094454_2095429_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	25.4	1.2e-13
WP_002460916.1|2095409_2096189_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	28.5	1.9e-09
WP_002491976.1|2096185_2096908_+	class B sortase	NA	NA	NA	NA	NA
WP_002460913.1|2096925_2097249_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_002491987.1|2097322_2098819_+	glucosaminidase domain-containing protein	NA	NA	NA	NA	NA
WP_002491991.1|2099170_2100169_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.4	1.3e-13
>prophage 168
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2106084	2107203	2571633		Planktothrix_phage(100.0%)	1	NA	NA
WP_002491959.1|2106084_2107203_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.3	1.3e-19
>prophage 169
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2113888	2116465	2571633		Lactococcus_phage(50.0%)	3	NA	NA
WP_002460886.1|2113888_2114467_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	38.1	4.2e-25
WP_002491979.1|2114737_2115784_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002479120.1|2115784_2116465_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.5	3.5e-39
>prophage 170
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2121632	2128477	2571633	tRNA	Bacillus_virus(33.33%)	5	NA	NA
WP_002491988.1|2121632_2122670_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.0	5.8e-25
WP_002491944.1|2122675_2123698_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002491955.1|2123699_2125358_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002479110.1|2125399_2126014_+	metallophosphoesterase	NA	A7KV25	Bacillus_phage	27.5	8.7e-13
WP_002491985.1|2126560_2128477_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	40.5	5.5e-146
>prophage 171
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2133207	2135820	2571633		Bacillus_virus(100.0%)	1	NA	NA
WP_002491977.1|2133207_2135820_+	AAA family ATPase	NA	G3MAX6	Bacillus_virus	36.2	5.0e-41
>prophage 172
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2142495	2144053	2571633		Planktothrix_phage(50.0%)	2	NA	NA
WP_002460839.1|2142495_2143311_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	1.4e-10
WP_002491982.1|2143303_2144053_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	1.9e-09
>prophage 173
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2150157	2150838	2571633		Tupanvirus(100.0%)	1	NA	NA
WP_002491970.1|2150157_2150838_+	type 1 glutamine amidotransferase	NA	A0A2K9L2L9	Tupanvirus	29.0	1.7e-09
>prophage 174
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2158510	2159746	2571633		Stx2-converting_phage(100.0%)	1	NA	NA
WP_002491964.1|2158510_2159746_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	29.0	5.4e-14
>prophage 175
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2165840	2170594	2571633		Staphylococcus_phage(66.67%)	4	NA	NA
WP_012990671.1|2165840_2168087_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.8e-185
WP_002460817.1|2168108_2168864_+	pyruvate formate lyase-activating protein	NA	NA	NA	NA	NA
WP_002460816.1|2168987_2169305_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	52.9	8.1e-23
WP_002492521.1|2169301_2170594_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	68.9	2.9e-159
>prophage 176
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2173667	2173868	2571633		Lactococcus_phage(100.0%)	1	NA	NA
WP_002479078.1|2173667_2173868_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	68.3	1.5e-19
>prophage 177
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2187316	2187988	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002460794.1|2187316_2187988_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	6.3e-25
>prophage 178
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2196775	2198159	2571633		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_037540732.1|2196775_2197549_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.9	1.1e-15
WP_002460781.1|2197535_2198159_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	26.4	2.9e-08
>prophage 179
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2201594	2202290	2571633		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002479058.1|2201594_2202290_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.9	5.2e-38
>prophage 180
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2219804	2222837	2571633		Lactobacillus_phage(100.0%)	1	NA	NA
WP_002492376.1|2219804_2222837_-	NADH-dependent flavin oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	55.9	2.5e-193
>prophage 181
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2227667	2230056	2571633		Erysipelothrix_phage(50.0%)	2	NA	NA
WP_002492524.1|2227667_2229020_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.5	2.0e-30
WP_002479037.1|2229108_2230056_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	E3SJ83	Synechococcus_phage	24.8	9.6e-11
>prophage 182
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2256845	2259557	2571633		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_002460713.1|2256845_2257868_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	27.3	3.6e-11
WP_002492464.1|2257879_2258770_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_002492425.1|2258759_2259557_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	48.9	6.8e-42
>prophage 183
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2263643	2265260	2571633		Vibrio_phage(100.0%)	1	NA	NA
WP_002492551.1|2263643_2265260_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.8	4.2e-22
>prophage 184
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2277459	2334111	2571633	integrase,protease,transposase	Staphylococcus_phage(25.0%)	52	2290417:2290434	2317322:2317339
WP_002460689.1|2277459_2278278_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002460688.1|2278297_2278879_+	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_002479005.1|2279037_2279838_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002492411.1|2280127_2280775_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002460684.1|2280866_2281505_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_002460683.1|2281549_2282476_-	DUF979 domain-containing protein	NA	NA	NA	NA	NA
WP_002460682.1|2282456_2283173_-	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_002492370.1|2283457_2284831_+	MFS transporter	NA	NA	NA	NA	NA
WP_002492511.1|2284948_2285929_-	choloylglycine hydrolase family protein	NA	M1H8K9	Paramecium_bursaria_Chlorella_virus	27.4	2.9e-26
WP_002492561.1|2286139_2288071_+	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002460676.1|2288086_2288533_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002460675.1|2288532_2288817_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002492448.1|2288831_2290187_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_002492567.1|2290254_2291217_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
2290417:2290434	attL	AATTTGTTTATTACATTC	NA	NA	NA	NA
WP_002492574.1|2291447_2292425_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_002478995.1|2292574_2293141_+	VOC family protein	NA	NA	NA	NA	NA
WP_002492459.1|2293154_2293559_+	SRPBCC domain-containing protein	NA	NA	NA	NA	NA
WP_002492500.1|2293681_2294557_+	ribokinase	NA	NA	NA	NA	NA
WP_002460663.1|2294656_2295292_-	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_002460661.1|2295291_2296134_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002492438.1|2296192_2296909_-	DUF3169 family protein	NA	NA	NA	NA	NA
WP_002460658.1|2296905_2297109_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002478990.1|2297751_2298123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002460656.1|2299293_2300136_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002492563.1|2300322_2300682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492426.1|2300694_2301747_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_037540924.1|2302392_2304372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492407.1|2304877_2306884_-	amidase domain-containing protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.2	2.8e-12
WP_002492582.1|2307192_2310030_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_002492560.1|2310091_2310580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000706213.1|2311623_2312736_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
WP_000026850.1|2312738_2314802_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000410574.1|2314810_2315176_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000368919.1|2315180_2316551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000612779.1|2316593_2317004_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	53.5	3.1e-30
WP_000733622.1|2317317_2318163_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	4.4e-31
2317322:2317339	attR	AATTTGTTTATTACATTC	NA	NA	NA	NA
WP_001096367.1|2318269_2320027_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284658.1|2320016_2320397_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_094449190.1|2320448_2320592_-	hypothetical protein	NA	A0A1Q1PW34	Staphylococcus_phage	65.7	6.7e-09
WP_002492452.1|2320765_2322004_+	arginine deiminase	NA	NA	NA	NA	NA
WP_002492397.1|2322298_2323060_+	esterase family protein	NA	NA	NA	NA	NA
WP_002478495.1|2323430_2324570_+	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	50.5	4.6e-108
WP_002478496.1|2324744_2325587_+	poly-gamma-glutamate hydrolase family protein	NA	A0A2H4IZ42	uncultured_Caudovirales_phage	38.9	4.7e-33
WP_002492456.1|2325618_2326245_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_002478498.1|2326488_2326590_+	DUF2648 domain-containing protein	NA	NA	NA	NA	NA
WP_002460638.1|2326856_2327519_+	capsular polysaccharide biosynthesis protein CapA	NA	NA	NA	NA	NA
WP_037540927.1|2327530_2328226_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	34.7	3.5e-26
WP_002460634.1|2328226_2328994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492552.1|2329028_2330828_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	30.1	7.9e-30
WP_002492483.1|2330838_2331861_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.0	4.8e-40
WP_002492433.1|2331872_2332982_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_002492384.1|2332986_2334111_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.3	2.5e-127
>prophage 185
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2341113	2343567	2571633		Bacillus_phage(50.0%)	2	NA	NA
WP_002492564.1|2341113_2342385_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.0	1.8e-20
WP_037540933.1|2342427_2343567_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.6	5.0e-22
>prophage 186
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2347424	2348174	2571633		Planktothrix_phage(100.0%)	1	NA	NA
WP_002492476.1|2347424_2348174_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	7.3e-30
>prophage 187
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2368819	2369998	2571633		Moumouvirus(100.0%)	1	NA	NA
WP_002492556.1|2368819_2369998_+	sulfate adenylyltransferase	NA	A0A2P1ELS9	Moumouvirus	31.2	7.7e-50
>prophage 188
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2373495	2375881	2571633		Enterococcus_phage(100.0%)	2	NA	NA
WP_002492375.1|2373495_2375343_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.1	6.5e-237
WP_002460588.1|2375344_2375881_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	42.9	2.7e-34
>prophage 189
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2382931	2395622	2571633	holin	Klosneuvirus(25.0%)	9	NA	NA
WP_002460580.1|2382931_2384638_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.8	4.5e-59
WP_002460578.1|2384885_2386064_+	amidohydrolase	NA	NA	NA	NA	NA
WP_002460576.1|2386202_2386472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492373.1|2386461_2386911_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002492434.1|2387547_2389140_+	acyl--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	34.7	1.1e-75
WP_002492525.1|2389388_2392013_+	pyruvate, phosphate dikinase	NA	A0A2D2W2B1	Stenotrophomonas_phage	42.2	9.6e-93
WP_002478549.1|2392017_2392833_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002460570.1|2393138_2394638_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_002460569.1|2394917_2395622_-	GntR family transcriptional regulator	NA	A0A291LID1	Streptomyces_phage	42.4	1.2e-05
>prophage 190
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2404437	2405328	2571633		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002478556.1|2404437_2405328_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.4e-06
>prophage 191
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2408608	2412743	2571633		Klosneuvirus(50.0%)	3	NA	NA
WP_002492435.1|2408608_2409946_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.2	1.4e-18
WP_002492515.1|2410257_2411619_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002460550.1|2411618_2412743_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	33.0	1.7e-06
>prophage 192
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2444178	2452850	2571633		Staphylococcus_phage(25.0%)	6	NA	NA
WP_002460510.1|2444178_2444880_+	transglycosylase SLT domain-containing protein	NA	Q4Z8Z7	Staphylococcus_phage	43.2	1.5e-32
WP_037540890.1|2445180_2446989_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	32.3	6.7e-37
WP_172412350.1|2447631_2448795_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002492369.1|2448811_2449810_+	D-lactate dehydrogenase	NA	M1HFV8	Paramecium_bursaria_Chlorella_virus	29.6	1.8e-31
WP_002478585.1|2450181_2450388_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002492558.1|2450462_2452850_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	39.7	1.4e-127
>prophage 193
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2456878	2457817	2571633		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
WP_002492548.1|2456878_2457817_-	NAD-dependent epimerase/dehydratase family protein	NA	E3T4Y8	Cafeteria_roenbergensis_virus	37.1	2.6e-48
>prophage 194
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2464720	2468111	2571633		Streptococcus_phage(50.0%)	6	NA	NA
WP_002478594.1|2464720_2465242_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	45.1	6.9e-27
WP_002460486.1|2465321_2465453_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002478595.1|2465514_2465646_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002460483.1|2465695_2465827_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002492381.1|2466297_2467383_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002492565.1|2467379_2468111_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	8.7e-28
>prophage 195
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2478164	2482794	2571633		Acanthamoeba_polyphaga_mimivirus(100.0%)	4	NA	NA
WP_002492542.1|2478164_2479220_-	zinc-dependent alcohol dehydrogenase family protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	28.6	3.3e-12
WP_002460464.1|2479432_2479837_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_002492388.1|2480558_2481524_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002492449.1|2481822_2482794_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	22.8	8.9e-12
>prophage 196
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2504971	2505964	2571633		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_037540460.1|2504971_2505964_-	D-lactate dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	32.1	3.0e-39
>prophage 197
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2538407	2542075	2571633		Bacillus_phage(50.0%)	2	NA	NA
WP_002460395.1|2538407_2539274_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.9	4.1e-77
WP_002492569.1|2540434_2542075_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.9	2.7e-93
>prophage 198
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2546462	2547158	2571633		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002492382.1|2546462_2547158_+	SDR family oxidoreductase	NA	A0A0K0KVL6	Prochlorococcus_phage	27.6	2.1e-07
>prophage 199
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2556818	2561037	2571633		Pandoravirus(50.0%)	4	NA	NA
WP_037540450.1|2556818_2558099_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A0B5JD48	Pandoravirus	26.7	4.3e-14
WP_002492559.1|2558628_2559459_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_002492572.1|2559455_2560262_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_002460368.1|2560263_2561037_-	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	8.4e-13
>prophage 200
NZ_CP023539	Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome	2571633	2569280	2569943	2571633		Bacillus_phage(100.0%)	1	NA	NA
WP_002460359.1|2569280_2569943_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	35.7	1.5e-18
