assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002393445.1_ASM239344v1	NZ_CP023525	Cedecea neteri strain FDAARGOS_392 chromosome, complete genome	1	1018007-1018081	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Orphan	CTGAGCAGTCCCCTCTCCCTCCCAG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA,NA	NA|246aa|up_9|NZ_CP023525.1_1010050_1010788_+	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	NA|163aa|up_8|NZ_CP023525.1_1010918_1011407_+	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR	NA|405aa|up_7|NZ_CP023525.1_1011522_1012737_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|129aa|up_6|NZ_CP023525.1_1012779_1013166_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|up_5|NZ_CP023525.1_1013241_1013565_+	PRK09502, iscA, iron-sulfur cluster assembly protein IscA	NA|172aa|up_4|NZ_CP023525.1_1013649_1014165_+	PRK05014, hscB, co-chaperone HscB; Provisional	NA|617aa|up_3|NZ_CP023525.1_1014200_1016051_+	PRK05183, hscA, chaperone protein HscA; Provisional	NA|112aa|up_2|NZ_CP023525.1_1016052_1016388_+	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|67aa|up_1|NZ_CP023525.1_1016399_1016600_+	PRK10721, PRK10721, hypothetical protein; Provisional	NA|429aa|up_0|NZ_CP023525.1_1016666_1017953_+	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|259aa|down_0|NZ_CP023525.1_1018133_1018910_+	PRK11611, PRK11611, enhanced serine sensitivity protein SseB; Provisional	NA|282aa|down_1|NZ_CP023525.1_1018961_1019807_-	PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase; Provisional	NA|1656aa|down_2|NZ_CP023525.1_1020046_1025014_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|776aa|down_3|NZ_CP023525.1_1025025_1027353_+	PRK11240, PRK11240, penicillin-binding protein 1C; Provisional	NA|144aa|down_4|NZ_CP023525.1_1027521_1027953_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|388aa|down_5|NZ_CP023525.1_1028130_1029294_+	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional	NA|331aa|down_6|NZ_CP023525.1_1029717_1030710_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|374aa|down_7|NZ_CP023525.1_1030748_1031870_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|425aa|down_8|NZ_CP023525.1_1031985_1033260_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|207aa|down_9|NZ_CP023525.1_1033295_1033916_+	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002393445.1_ASM239344v1	NZ_CP023525	Cedecea neteri strain FDAARGOS_392 chromosome, complete genome	2	3739502-3741512	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	33,32,21	33	TypeI-F	csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA,NA	NA|84aa|up_9|NZ_CP023525.1_3730634_3730886_+	pfam06643, DUF1158, Protein of unknown function (DUF1158)	NA|1016aa|up_8|NZ_CP023525.1_3731120_3734168_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|295aa|up_7|NZ_CP023525.1_3734179_3735064_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|219aa|up_6|NZ_CP023525.1_3735050_3735707_+	PRK10179, PRK10179, formate dehydrogenase-N subunit gamma; Provisional	NA|87aa|up_5|NZ_CP023525.1_3735920_3736181_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_4|NZ_CP023525.1_3736213_3736981_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|89aa|up_3|NZ_CP023525.1_3737073_3737340_+	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282)	NA|279aa|up_2|NZ_CP023525.1_3737356_3738193_+	PRK05409, PRK05409, hypothetical protein; Provisional	NA|249aa|up_1|NZ_CP023525.1_3738189_3738936_+	pfam09836, DUF2063, Putative DNA-binding domain	NA|156aa|up_0|NZ_CP023525.1_3738958_3739426_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|436aa|down_0|NZ_CP023525.1_3741984_3743292_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|128aa|down_1|NZ_CP023525.1_3743288_3743672_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas6f|185aa|down_2|NZ_CP023525.1_3743944_3744499_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|332aa|down_3|NZ_CP023525.1_3744509_3745505_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|318aa|down_4|NZ_CP023525.1_3745516_3746470_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|440aa|down_5|NZ_CP023525.1_3746462_3747782_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1085aa|down_6|NZ_CP023525.1_3748178_3751433_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|324aa|down_7|NZ_CP023525.1_3751429_3752401_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|94aa|down_8|NZ_CP023525.1_3752693_3752975_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|86aa|down_9|NZ_CP023525.1_3752978_3753236_-	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]
GCF_002393445.1_ASM239344v1	NZ_CP023525	Cedecea neteri strain FDAARGOS_392 chromosome, complete genome	3	3753375-3753702	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,5,5	5	TypeI-F	csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA,NA|33aa|down_9|NZ_CP023525.1_3762600_3762699_-	NA|436aa|up_9|NZ_CP023525.1_3741984_3743292_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|128aa|up_8|NZ_CP023525.1_3743288_3743672_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas6f|185aa|up_7|NZ_CP023525.1_3743944_3744499_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|332aa|up_6|NZ_CP023525.1_3744509_3745505_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|318aa|up_5|NZ_CP023525.1_3745516_3746470_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|440aa|up_4|NZ_CP023525.1_3746462_3747782_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1085aa|up_3|NZ_CP023525.1_3748178_3751433_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|324aa|up_2|NZ_CP023525.1_3751429_3752401_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|94aa|up_1|NZ_CP023525.1_3752693_3752975_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|86aa|up_0|NZ_CP023525.1_3752978_3753236_-	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|303aa|down_0|NZ_CP023525.1_3753913_3754822_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|132aa|down_1|NZ_CP023525.1_3754978_3755374_+	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|247aa|down_2|NZ_CP023525.1_3755387_3756128_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|552aa|down_3|NZ_CP023525.1_3756345_3758001_+	PRK10420, PRK10420, L-lactate permease; Provisional	NA|263aa|down_4|NZ_CP023525.1_3757997_3758786_+	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|381aa|down_5|NZ_CP023525.1_3758782_3759925_+	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|101aa|down_6|NZ_CP023525.1_3759932_3760235_-	COG3636, COG3636, Predicted transcriptional regulator [Transcription]	NA|99aa|down_7|NZ_CP023525.1_3760503_3760800_-	PRK08178, PRK08178, acetolactate synthase 1 small subunit	NA|563aa|down_8|NZ_CP023525.1_3760803_3762492_-	PRK08155, PRK08155, acetolactate synthase large subunit	NA|33aa|down_9|NZ_CP023525.1_3762600_3762699_-	NA
GCF_002393445.1_ASM239344v1	NZ_CP023525	Cedecea neteri strain FDAARGOS_392 chromosome, complete genome	4	4637926-4638044	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	Orphan	CCTGAGACTCACCCCTTTGGGGCCAGCGCAAGCGCTGTTCAAAA	44	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	NA|86aa|up_5|NZ_CP023525.1_4632620_4632878_-,NA|430aa|down_0|NZ_CP023525.1_4638440_4639730_+	NA|446aa|up_9|NZ_CP023525.1_4626743_4628081_-	pfam05936, T6SS_VasE, Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE	NA|516aa|up_8|NZ_CP023525.1_4628099_4629647_-	TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108 family	NA|166aa|up_7|NZ_CP023525.1_4629681_4630179_-	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2	NA|412aa|up_6|NZ_CP023525.1_4631287_4632523_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|86aa|up_5|NZ_CP023525.1_4632620_4632878_-	NA	NA|197aa|up_4|NZ_CP023525.1_4632874_4633465_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|82aa|up_3|NZ_CP023525.1_4633454_4633700_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|571aa|up_2|NZ_CP023525.1_4633696_4635409_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|457aa|up_1|NZ_CP023525.1_4635405_4636776_-	TIGR00665, DnaB, replicative DNA helicase	NA|291aa|up_0|NZ_CP023525.1_4636822_4637695_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|430aa|down_0|NZ_CP023525.1_4638440_4639730_+	NA	NA|143aa|down_1|NZ_CP023525.1_4640296_4640725_-	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|560aa|down_2|NZ_CP023525.1_4640877_4642557_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|715aa|down_3|NZ_CP023525.1_4642931_4645076_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|281aa|down_4|NZ_CP023525.1_4645075_4645918_+	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|449aa|down_5|NZ_CP023525.1_4645947_4647294_+	PRK09058, PRK09058, heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA|166aa|down_6|NZ_CP023525.1_4647290_4647788_+	COG3721, HugX, Putative heme iron utilization protein [Inorganic ion transport and metabolism]	NA|208aa|down_7|NZ_CP023525.1_4647784_4648408_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|411aa|down_8|NZ_CP023525.1_4648516_4649749_+	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily	NA|282aa|down_9|NZ_CP023525.1_4649870_4650716_+	PRK11752, PRK11752, putative S-transferase; Provisional
