assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002393365.1_ASM239336v1	NZ_CP023535	Escherichia coli strain FDAARGOS_403 chromosome, complete genome	1	587299-587429	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Orphan	CCGGGTTAACCCAATCGGCTTCAGGCTGCTGCGGTTGGTGT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA|60aa|up_7|NZ_CP023535.1_582558_582738_-,NA|35aa|up_5|NZ_CP023535.1_583348_583453_-,NA|361aa|up_0|NZ_CP023535.1_586163_587246_-,NA|181aa|down_3|NZ_CP023535.1_588995_589538_+,NA|128aa|down_5|NZ_CP023535.1_590796_591180_+,NA|238aa|down_6|NZ_CP023535.1_591183_591897_+,NA|120aa|down_7|NZ_CP023535.1_591928_592288_+,NA|70aa|down_8|NZ_CP023535.1_592256_592466_-	NA|106aa|up_9|NZ_CP023535.1_581686_582004_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|162aa|up_8|NZ_CP023535.1_582054_582540_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|60aa|up_7|NZ_CP023535.1_582558_582738_-	NA	NA|71aa|up_6|NZ_CP023535.1_582947_583160_-	pfam01848, HOK_GEF, Hok/gef family	NA|35aa|up_5|NZ_CP023535.1_583348_583453_-	NA	NA|195aa|up_4|NZ_CP023535.1_583568_584153_-	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|132aa|up_3|NZ_CP023535.1_584209_584605_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|257aa|up_2|NZ_CP023535.1_584620_585391_-	pfam07789, DUF1627, Protein of unknown function (DUF1627)	NA|247aa|up_1|NZ_CP023535.1_585416_586157_-	PRK12377, PRK12377, putative replication protein; Provisional	NA|361aa|up_0|NZ_CP023535.1_586163_587246_-	NA	NA|99aa|down_0|NZ_CP023535.1_587499_587796_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|67aa|down_1|NZ_CP023535.1_587934_588135_-	pfam09048, Cro, Cro	NA|238aa|down_2|NZ_CP023535.1_588235_588949_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|181aa|down_3|NZ_CP023535.1_588995_589538_+	NA	NA|259aa|down_4|NZ_CP023535.1_589525_590302_+	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|128aa|down_5|NZ_CP023535.1_590796_591180_+	NA	NA|238aa|down_6|NZ_CP023535.1_591183_591897_+	NA	NA|120aa|down_7|NZ_CP023535.1_591928_592288_+	NA	NA|70aa|down_8|NZ_CP023535.1_592256_592466_-	NA	NA|74aa|down_9|NZ_CP023535.1_592922_593144_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed
GCF_002393365.1_ASM239336v1	NZ_CP023535	Escherichia coli strain FDAARGOS_403 chromosome, complete genome	2	1936749-1936838	2	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC	29	0	0	NA	NA	I-E	1	1	TypeI-E	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA,NA	NA|254aa|up_9|NZ_CP023535.1_1928561_1929323_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP023535.1_1929303_1930353_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP023535.1_1930349_1930829_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP023535.1_1930828_1931539_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP023535.1_1931557_1931869_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP023535.1_1932062_1932386_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP023535.1_1932435_1933041_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP023535.1_1933040_1934468_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP023535.1_1934469_1935378_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP023535.1_1935629_1936667_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP023535.1_1936934_1937228_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP023535.1_1937227_1938148_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP023535.1_1938144_1938795_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP023535.1_1938776_1939523_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP023535.1_1939533_1940589_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP023535.1_1940600_1941137_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP023535.1_1941133_1942696_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP023535.1_1942793_1945493_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|371aa|down_8|NZ_CP023535.1_1945846_1946959_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_9|NZ_CP023535.1_1947035_1947188_-	pfam01848, HOK_GEF, Hok/gef family
GCF_002393365.1_ASM239336v1	NZ_CP023535	Escherichia coli strain FDAARGOS_403 chromosome, complete genome	3	1963887-1964708	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,GGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA,NA|47aa|down_1|NZ_CP023535.1_1965857_1965998_+	NA|424aa|up_9|NZ_CP023535.1_1952530_1953802_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP023535.1_1953792_1954053_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP023535.1_1954069_1954645_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP023535.1_1954792_1955653_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP023535.1_1955649_1956429_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP023535.1_1956406_1957816_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP023535.1_1957837_1959292_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP023535.1_1959361_1960147_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP023535.1_1960465_1961743_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP023535.1_1961769_1963248_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP023535.1_1965047_1965719_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP023535.1_1965857_1965998_+	NA	NA|433aa|down_2|NZ_CP023535.1_1966943_1968242_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP023535.1_1968329_1969967_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP023535.1_1970194_1970986_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP023535.1_1971056_1971392_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP023535.1_1971391_1971640_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP023535.1_1971717_1973952_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP023535.1_1973999_1975301_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP023535.1_1975357_1978114_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002393365.1_ASM239336v1	NZ_CP023535	Escherichia coli strain FDAARGOS_403 chromosome, complete genome	4	4537198-4537294	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA,NA	NA|454aa|up_9|NZ_CP023535.1_4525077_4526439_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP023535.1_4526495_4527797_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP023535.1_4527818_4528964_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP023535.1_4529092_4529878_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP023535.1_4529888_4531124_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP023535.1_4531145_4532195_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP023535.1_4532511_4534179_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP023535.1_4534188_4535448_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP023535.1_4535458_4536274_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP023535.1_4536270_4537164_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP023535.1_4537358_4538426_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP023535.1_4538422_4538932_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP023535.1_4539049_4539772_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP023535.1_4539774_4540269_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP023535.1_4540442_4541828_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP023535.1_4541863_4542385_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP023535.1_4542492_4542705_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP023535.1_4542706_4543573_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP023535.1_4544053_4544596_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP023535.1_4544815_4545508_+	PRK15195, PRK15195, molecular chaperone FimC
