assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002386325.1_ASM238632v1	NZ_CP023512	Salmonella enterica subsp. enterica serovar Saintpaul strain FDAARGOS_373 chromosome, complete genome	1	2407630-2408939	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,20	21	TypeI-E	DinG,cas3,csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP023512.1_2399496_2400258_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP023512.1_2400238_2401288_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP023512.1_2401284_2401764_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP023512.1_2401763_2402474_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP023512.1_2402492_2402804_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP023512.1_2402994_2403318_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP023512.1_2403368_2403974_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP023512.1_2403960_2405400_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP023512.1_2405409_2406318_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP023512.1_2406568_2407615_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP023512.1_2409035_2409329_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP023512.1_2409328_2410249_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP023512.1_2410245_2410896_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP023512.1_2410877_2411624_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP023512.1_2411634_2412693_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP023512.1_2412706_2413267_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP023512.1_2413263_2414820_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP023512.1_2414831_2417495_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP023512.1_2417939_2418893_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP023512.1_2418980_2419715_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002386325.1_ASM238632v1	NZ_CP023512	Salmonella enterica subsp. enterica serovar Saintpaul strain FDAARGOS_373 chromosome, complete genome	2	2425082-2425537	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,6	7	TypeI-E	DinG,cas3,csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	cas7|353aa|up_9|NZ_CP023512.1_2411634_2412693_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP023512.1_2412706_2413267_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP023512.1_2413263_2414820_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP023512.1_2414831_2417495_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP023512.1_2417939_2418893_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP023512.1_2418980_2419715_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP023512.1_2419790_2421503_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP023512.1_2421502_2423302_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP023512.1_2423736_2424099_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP023512.1_2424186_2424984_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP023512.1_2425833_2426505_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP023512.1_2426640_2427939_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP023512.1_2428021_2429659_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP023512.1_2429886_2430687_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP023512.1_2431292_2431880_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP023512.1_2431959_2434659_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP023512.1_2434671_2435445_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP023512.1_2435464_2435971_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP023512.1_2435985_2436456_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP023512.1_2436452_2436989_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_002386325.1_ASM238632v1	NZ_CP023512	Salmonella enterica subsp. enterica serovar Saintpaul strain FDAARGOS_373 chromosome, complete genome	3	2756311-2756712	3	PILER-CR	no		DinG,cas3,csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	ATAGCGTCGTGGACAGTCATTCATCCTGCCGCCCTGTAAAAGCAAAAACCCGCC	54	0	0	NA	NA	NA	3	3	Orphan	DinG,cas3,csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|55aa|up_7|NZ_CP023512.1_2743729_2743894_+,NA	NA|299aa|up_9|NZ_CP023512.1_2742003_2742900_-	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|234aa|up_8|NZ_CP023512.1_2743004_2743706_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|55aa|up_7|NZ_CP023512.1_2743729_2743894_+	NA	NA|437aa|up_6|NZ_CP023512.1_2744006_2745317_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|455aa|up_5|NZ_CP023512.1_2746910_2748275_-	PRK15040, PRK15040, L-serine ammonia-lyase	NA|765aa|up_4|NZ_CP023512.1_2748344_2750639_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|403aa|up_3|NZ_CP023512.1_2750672_2751881_-	PRK12379, PRK12379, propionate kinase	NA|444aa|up_2|NZ_CP023512.1_2751947_2753279_-	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|330aa|up_1|NZ_CP023512.1_2753299_2754289_-	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|313aa|up_0|NZ_CP023512.1_2754386_2755325_-	PRK10341, PRK10341, transcriptional regulator TdcA	NA|382aa|down_0|NZ_CP023512.1_2757137_2758283_-	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|297aa|down_1|NZ_CP023512.1_2758380_2759271_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|257aa|down_2|NZ_CP023512.1_2759296_2760067_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|524aa|down_3|NZ_CP023512.1_2760596_2762168_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|316aa|down_4|NZ_CP023512.1_2762407_2763355_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|278aa|down_5|NZ_CP023512.1_2763365_2764199_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|285aa|down_6|NZ_CP023512.1_2764532_2765387_+	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|305aa|down_7|NZ_CP023512.1_2765397_2766312_+	TIGR03828, pfkB, 1-phosphofructokinase	NA|476aa|down_8|NZ_CP023512.1_2766338_2767766_+	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|269aa|down_9|NZ_CP023512.1_2767752_2768559_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
