The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	53136	87502	2702288	tRNA	Staphylococcus_phage(92.59%)	35	NA	NA
WP_061054678.1|53136_54393_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
WP_096754279.1|54478_54796_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	2.5e-32
WP_096754280.1|54816_57231_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	84.8	0.0e+00
WP_061054677.1|57609_58788_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	6.7e-163
WP_002481235.1|59060_60023_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.4	2.5e-67
WP_002481236.1|60019_60577_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	62.2	6.0e-61
WP_002481237.1|60642_61599_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002481238.1|61775_62606_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002481239.1|62867_63863_+	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	2.9e-114
WP_002481240.1|63936_64398_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	72.5	1.1e-57
WP_096754281.1|64430_65612_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	6.3e-169
WP_002481242.1|65627_66260_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	3.7e-67
WP_002481243.1|66264_67314_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	59.6	9.0e-119
WP_002481244.1|67707_69189_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
WP_002481245.1|69330_70176_-	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
WP_023016000.1|70575_70797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481247.1|71001_71499_+	hypothetical protein	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
WP_142351314.1|71579_71939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002481249.1|71913_72375_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	40.9	1.8e-18
WP_002481250.1|72516_73233_-	transaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
WP_002481251.1|73420_73729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002481252.1|73789_74161_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.5	6.1e-38
WP_002481253.1|74153_74507_+	CrcB family protein	NA	NA	NA	NA	NA
WP_002481254.1|74558_75395_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.1	3.2e-103
WP_002481255.1|75516_76416_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
WP_002481256.1|76512_77709_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.4	8.8e-187
WP_002481257.1|78096_79689_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.0e-259
WP_002481258.1|79741_80515_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.7e-93
WP_002481259.1|80480_80972_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	50.3	1.0e-35
WP_002481260.1|81049_81307_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
WP_002481261.1|81297_82308_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	54.0	8.5e-98
WP_002481262.1|82310_83699_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	56.9	3.8e-157
WP_002481263.1|83814_84507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103364072.1|84707_85199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096754676.1|85540_87502_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.8e-67
>prophage 2
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	168262	225578	2702288	tRNA,terminase,head,protease,integrase,portal,tail,capsid	Staphylococcus_phage(53.85%)	62	209732:209749	223636:223653
WP_037556606.1|168262_169690_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_002481676.1|169702_171160_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_096754290.1|171159_171462_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_096754291.1|171848_173375_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_061054659.1|173480_174524_-	NAD-dependent formate dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	30.5	1.8e-26
WP_002481680.1|174681_175881_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_002481681.1|175900_177904_-	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	36.8	1.2e-111
WP_061054658.1|177907_180103_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.7	5.1e-132
WP_002481683.1|180104_180794_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_023015874.1|180924_181227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096754292.1|181342_182641_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	31.8	3.2e-17
WP_002481686.1|182853_183027_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_002481687.1|183016_183586_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_002481688.1|183646_184492_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	51.2	1.2e-65
WP_002481689.1|184484_185954_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	48.3	1.5e-116
WP_002481690.1|186204_187284_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_002481691.1|187315_188122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002481692.1|188215_189592_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002481693.1|189810_190737_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_002481694.1|190812_191364_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002481695.1|191483_192602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002481696.1|192667_194230_-	SLC13/DASS family transporter	NA	NA	NA	NA	NA
WP_002481697.1|194487_195522_-	lactonase family protein	NA	NA	NA	NA	NA
WP_081600405.1|195758_196100_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	40.6	7.4e-14
WP_002481699.1|196172_196415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481700.1|196755_197799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096754293.1|198093_199143_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002481702.1|199161_199845_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.8	8.7e-30
WP_002481703.1|199925_200762_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_002481704.1|200758_201319_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_002481705.1|201467_201944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481706.1|202174_202738_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002481707.1|202788_203517_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002481708.1|203513_204401_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	1.6e-28
WP_002481709.1|204423_205104_-	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_002481710.1|205100_205991_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	1.7e-17
WP_002481711.1|205987_206368_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002481712.1|206532_206724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481713.1|206916_208212_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002481714.1|208601_209627_+	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
209732:209749	attL	TTACATCATGCCTGGCAT	NA	NA	NA	NA
WP_096754294.1|210459_210693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096754295.1|210786_211095_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_096754296.1|211274_212918_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.3	8.5e-156
WP_060804154.1|212910_213231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060804153.1|213365_213659_-	hypothetical protein	NA	R9TNN2	Paenibacillus_phage	44.9	1.5e-18
WP_060804152.1|213651_213933_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_096754297.1|213998_215231_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_096754298.1|215232_215799_-|head,protease	HK97 family phage prohead protease	head,protease	U3PDW7	Staphylococcus_phage	37.1	3.6e-21
WP_096754299.1|215785_216988_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	34.9	3.7e-60
WP_061054841.1|217153_217426_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	70.8	1.2e-30
WP_096754300.1|217412_218216_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	76.8	3.7e-120
WP_096754301.1|218398_220012_-	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	72.6	1.9e-224
WP_096754302.1|220069_220372_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	43.6	6.4e-17
WP_096754303.1|220372_220714_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_096754304.1|220715_220925_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	3.4e-17
WP_096754305.1|220927_221131_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	64.2	4.9e-21
WP_096754306.1|221132_221438_-	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	78.6	2.3e-38
WP_096754307.1|221441_221660_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB7	Staphylococcus_phage	79.2	1.6e-22
WP_096754308.1|221859_222387_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPB6	Staphylococcus_phage	72.6	2.6e-66
WP_096754309.1|222396_223572_+|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	67.2	3.4e-151
WP_002481715.1|223635_225255_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.0	3.8e-156
223636:223653	attR	TTACATCATGCCTGGCAT	NA	NA	NA	NA
WP_002481716.1|225293_225578_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	35.9	1.8e-13
>prophage 3
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	616444	646088	2702288	protease,holin	Mycoplasma_phage(33.33%)	27	NA	NA
WP_002479764.1|616444_616906_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_002479765.1|616902_617604_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_002479766.1|617838_618198_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_002479767.1|618217_618580_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_002479768.1|618581_619124_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479769.1|619237_620005_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002479770.1|620098_620788_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002479771.1|620787_621732_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_096754365.1|621763_622393_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002479773.1|622392_623607_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	50.5	3.8e-20
WP_061054603.1|624074_624671_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_002479776.1|625147_626785_+	APC family permease	NA	NA	NA	NA	NA
WP_037556068.1|626867_628247_+	carboxylesterase/lipase family protein	NA	NA	NA	NA	NA
WP_002479778.1|628285_629449_-	MFS transporter	NA	NA	NA	NA	NA
WP_002479779.1|629620_630400_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002479780.1|630396_631065_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	34.2	5.2e-19
WP_061054602.1|631233_631977_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_105165370.1|632165_632888_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002479783.1|633137_633599_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
WP_037556180.1|633944_635474_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_002479785.1|635680_637849_+	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
WP_002479786.1|637945_639199_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_002479787.1|639243_640023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002479788.1|640093_641455_-	gluconate:H+ symporter (GntP) family transporter	NA	NA	NA	NA	NA
WP_096754366.1|641591_643127_-	gluconokinase	NA	NA	NA	NA	NA
WP_002479790.1|643139_643826_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479791.1|643988_646088_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.2	1.0e-113
>prophage 4
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	1686210	1696330	2702288		Acinetobacter_phage(33.33%)	8	NA	NA
WP_002481516.1|1686210_1687275_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	2.2e-19
WP_002481517.1|1687416_1687953_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_096754521.1|1688079_1689582_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
WP_002481519.1|1689876_1691400_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
WP_002481520.1|1691582_1692086_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
WP_002481521.1|1692088_1692976_-	DMT family transporter	NA	NA	NA	NA	NA
WP_023015387.1|1693860_1694262_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
WP_002481523.1|1694224_1696330_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.0	0.0e+00
>prophage 5
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	1738831	1753318	2702288	terminase,head,protease,integrase,transposase,portal,tail,capsid	Staphylococcus_phage(76.92%)	18	1733815:1733829	1756786:1756800
1733815:1733829	attL	GGCGGTACAGGTTTA	NA	NA	NA	NA
WP_061054687.1|1738831_1740148_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.0	2.4e-44
WP_096754529.1|1741000_1742056_-|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	43.4	6.8e-66
WP_105165378.1|1742057_1742816_-	helix-turn-helix transcriptional regulator	NA	A0A1Q1PVX8	Staphylococcus_phage	37.5	1.2e-06
WP_061054849.1|1742935_1743163_+	helix-turn-helix transcriptional regulator	NA	A0A1Q1PVY0	Staphylococcus_phage	47.9	1.9e-10
WP_061054848.1|1743207_1743453_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_061054847.1|1743469_1743673_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	68.7	7.5e-22
WP_061054846.1|1743675_1743882_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	63.1	5.1e-18
WP_061054845.1|1743886_1744231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061054844.1|1744227_1744527_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	48.5	6.1e-20
WP_096754530.1|1744584_1746204_+	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	74.1	7.9e-231
WP_061054842.1|1746373_1747177_+	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	76.8	3.7e-120
WP_061054841.1|1747163_1747436_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	70.8	1.2e-30
WP_061054840.1|1747605_1748808_+|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	34.9	1.7e-60
WP_061054839.1|1748794_1749361_+|head,protease	HK97 family phage prohead protease	head,protease	U3PDW7	Staphylococcus_phage	37.1	2.7e-21
WP_096754531.1|1749362_1750595_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_061054837.1|1750660_1750942_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_060804154.1|1751361_1751682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096754532.1|1751674_1753318_+|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.3	1.4e-155
1756786:1756800	attR	TAAACCTGTACCGCC	NA	NA	NA	NA
>prophage 6
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	1793364	1841465	2702288	terminase,head,holin,protease,integrase,transposase,portal,tail,capsid	Staphylococcus_phage(55.56%)	66	1792681:1792696	1817100:1817115
1792681:1792696	attL	AACACAACTAATTTAA	NA	NA	NA	NA
WP_180363382.1|1793364_1794615_+	SufS family cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.0	8.6e-108
WP_023015332.1|1794604_1795075_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_002481616.1|1795273_1796671_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_096754537.1|1796738_1797788_-|integrase	site-specific integrase	integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	88.3	2.9e-181
WP_096754538.1|1797875_1798109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156423344.1|1798122_1798275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096754539.1|1798384_1798963_+	hypothetical protein	NA	A0A1P8L6F9	Staphylococcus_phage	57.7	1.0e-47
WP_096754540.1|1798959_1799154_-	hypothetical protein	NA	A0A1P8L6H3	Staphylococcus_phage	71.0	3.6e-05
WP_192940604.1|1799482_1799635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096754542.1|1799796_1800501_-	helix-turn-helix transcriptional regulator	NA	Q4ZA68	Staphylococcus_virus	71.0	7.8e-74
WP_057510824.1|1800633_1800849_+	hypothetical protein	NA	Q4ZA66	Staphylococcus_virus	94.4	1.4e-29
WP_096754543.1|1800863_1801637_+	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	80.5	4.2e-113
WP_096754544.1|1801647_1801962_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	37.3	5.2e-14
WP_060804178.1|1802097_1802307_-	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	91.3	2.9e-29
WP_060804179.1|1802384_1802603_+	hypothetical protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	52.0	6.8e-13
WP_070724729.1|1803116_1803335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070724730.1|1803397_1803616_+	hypothetical protein	NA	A0A1J0MG48	Staphylococcus_phage	64.6	4.1e-18
WP_060804183.1|1803633_1803861_+	hypothetical protein	NA	Q4ZCA4	Staphylococcus_virus	74.0	1.4e-21
WP_070684225.1|1804105_1804345_+	hypothetical protein	NA	Q4ZCA3	Staphylococcus_virus	96.2	2.2e-36
WP_070684223.1|1804337_1804568_+	DUF2483 family protein	NA	Q4ZCA2	Staphylococcus_virus	73.7	5.9e-23
WP_070724733.1|1804560_1805190_+	ERF family protein	NA	A0A059T7J7	Staphylococcus_phage	66.7	1.6e-75
WP_070724736.1|1805189_1805636_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	92.8	5.3e-52
WP_096754545.1|1805648_1806326_+	hypothetical protein	NA	Q4ZC99	Staphylococcus_virus	93.3	1.1e-122
WP_192940605.1|1806520_1806961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096754547.1|1807026_1807782_+	conserved phage C-terminal domain-containing protein	NA	W5R8N2	Staphylococcus_phage	73.6	4.0e-76
WP_096754548.1|1807782_1808568_+	ATP-binding protein	NA	A0A1W6JPS4	Staphylococcus_phage	62.5	5.2e-95
WP_096754550.1|1808733_1809141_+	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC94	Staphylococcus_virus	90.4	5.9e-66
WP_096754551.1|1809141_1809333_+	hypothetical protein	NA	Q4ZC92	Staphylococcus_virus	96.8	6.6e-28
WP_096754552.1|1809345_1809867_+	hypothetical protein	NA	Q4ZC91	Staphylococcus_virus	35.2	1.0e-14
WP_192940617.1|1809995_1810304_+	DUF3310 domain-containing protein	NA	Q4ZC89	Staphylococcus_virus	86.1	4.6e-47
WP_070724751.1|1810488_1810752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096754555.1|1810765_1811011_+	hypothetical protein	NA	A0A0E3TAH1	Staphylococcus_phage	63.6	2.0e-13
WP_070864604.1|1811010_1811253_+	hypothetical protein	NA	Q4ZC83	Staphylococcus_virus	92.2	1.9e-32
WP_070724772.1|1811245_1811668_+	dUTP diphosphatase	NA	Q4ZC82	Staphylococcus_virus	98.6	1.1e-70
WP_023016055.1|1811777_1811969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070724753.1|1811961_1812126_+	transcriptional regulator	NA	Q4ZC79	Staphylococcus_virus	79.3	1.9e-15
WP_070724755.1|1812125_1812566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070724757.1|1812748_1812934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070724759.1|1813014_1813413_+	hypothetical protein	NA	A0A2H4J610	uncultured_Caudovirales_phage	84.7	9.8e-58
WP_070684441.1|1813582_1813966_+	hypothetical protein	NA	A0A1J0MFN7	Staphylococcus_phage	56.7	4.3e-34
WP_096754556.1|1813980_1814337_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	80.5	7.2e-52
WP_023016047.1|1814429_1814903_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	81.3	3.9e-69
WP_060804546.1|1814899_1816603_+|terminase	terminase	terminase	A0A1J0MGD9	Staphylococcus_phage	84.5	5.5e-283
WP_023016045.1|1816614_1816812_+	hypothetical protein	NA	A0A1J0MFN2	Staphylococcus_phage	71.9	1.2e-13
WP_192940606.1|1816816_1818073_+|portal	phage portal protein	portal	A0A1J0MFU3	Staphylococcus_phage	83.0	3.1e-198
1817100:1817115	attR	TTAAATTAGTTGTGTT	NA	NA	NA	NA
WP_023016043.1|1818065_1818641_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1J0MFL1	Staphylococcus_phage	78.0	7.0e-81
WP_023016042.1|1818734_1819973_+|capsid	phage major capsid protein	capsid	A0A1J0MFW8	Staphylococcus_phage	74.3	3.5e-162
WP_180363400.1|1819986_1820142_+	hypothetical protein	NA	A0A1J0MFP2	Staphylococcus_phage	68.6	3.2e-09
WP_031262785.1|1820151_1820442_+|head,tail	phage head-tail connector protein	head,tail	A0A1J0MFU4	Staphylococcus_phage	74.2	2.6e-36
WP_023016039.1|1820422_1820755_+|head,tail	head-tail adaptor protein	head,tail	A0A1J0MG09	Staphylococcus_phage	75.5	4.2e-46
WP_060804534.1|1820754_1821132_+	HK97 gp10 family phage protein	NA	A0A1J0MGE3	Staphylococcus_phage	60.8	1.4e-37
WP_070724761.1|1821128_1821491_+	hypothetical protein	NA	A0A1J0MFP0	Staphylococcus_phage	69.2	9.6e-44
WP_082709482.1|1821502_1822216_+	hypothetical protein	NA	A0A1J0MFV0	Staphylococcus_phage	81.3	3.4e-101
WP_002479755.1|1822360_1823695_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-112
WP_070684439.1|1823874_1824321_+	hypothetical protein	NA	A0A1J0MFL9	Staphylococcus_phage	63.5	3.7e-45
WP_096754690.1|1824380_1824503_+	hypothetical protein	NA	A0A1J0MFX7	Staphylococcus_phage	87.5	2.5e-12
WP_070724762.1|1824520_1829527_+|tail	phage tail tape measure protein	tail	A0A1J0MFP9	Staphylococcus_phage	58.8	1.9e-275
WP_060804522.1|1829528_1831022_+|tail	phage tail family protein	tail	A0A1J0MFV2	Staphylococcus_phage	69.5	1.5e-207
WP_096754557.1|1831037_1835978_+	hypothetical protein	NA	A0A2H4J300	uncultured_Caudovirales_phage	41.1	0.0e+00
WP_155974680.1|1835964_1836132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060804518.1|1836175_1836460_+	hypothetical protein	NA	A0A1J0MFP4	Staphylococcus_phage	68.6	1.4e-26
WP_070469054.1|1836498_1836915_+	hypothetical protein	NA	A0A1D6Z278	Staphylococcus_phage	59.1	1.0e-41
WP_070469052.1|1836898_1837294_+	hypothetical protein	NA	A0A1D6Z274	Staphylococcus_phage	72.7	3.8e-46
WP_096754558.1|1837340_1837763_+|holin	phage holin	holin	Q4ZCC5	Staphylococcus_virus	86.4	7.0e-62
WP_096754559.1|1837743_1838631_+	SH3 domain-containing protein	NA	A0A2H4J2Z6	uncultured_Caudovirales_phage	46.8	3.0e-115
WP_070848747.1|1841105_1841465_-	DUF1828 domain-containing protein	NA	Q4ZCC0	Staphylococcus_virus	29.6	1.3e-08
>prophage 7
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	2039470	2047892	2702288		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_002480494.1|2039470_2039953_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
WP_002480495.1|2039939_2041067_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002480496.1|2041066_2041771_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.9	1.1e-48
WP_002480497.1|2041770_2042031_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002480498.1|2042030_2042702_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002480499.1|2042694_2044884_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
WP_002480500.1|2044862_2046284_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
WP_061054794.1|2046288_2047329_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	1.5e-68
WP_002480502.1|2047325_2047892_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	3.5e-32
>prophage 8
NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2702288	2614556	2624630	2702288	tRNA	Klosneuvirus(33.33%)	7	NA	NA
WP_061054697.1|2614556_2616323_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
WP_002481114.1|2616338_2617613_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	3.9e-15
WP_002481115.1|2617938_2618814_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
WP_002481116.1|2618810_2619263_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_096754666.1|2619278_2621468_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
WP_023016066.1|2621819_2622338_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	8.1e-28
WP_061054696.1|2622356_2624630_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.7	2.7e-75
>prophage 1
NZ_CP023496	Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence	169687	35661	104076	169687	tRNA,integrase,transposase	Staphylococcus_phage(26.67%)	52	77252:77311	107080:108648
WP_096754238.1|35661_36366_+|tRNA	tRNA-dependent cyclodipeptide synthase	tRNA	NA	NA	NA	NA
WP_011276927.1|36349_37549_+	cytochrome P450, cyclodipeptide synthase-associated	NA	NA	NA	NA	NA
WP_096754239.1|37793_38177_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_096754240.1|38345_39353_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_192940601.1|39405_39861_+	mobilization protein	NA	NA	NA	NA	NA
WP_002467551.1|41188_41536_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	1.9e-12
WP_002497230.1|41703_41805_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_002497495.1|41995_42646_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002497491.1|43223_44603_-	PTS glucitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002497490.1|44740_45718_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.7	1.5e-19
WP_050963114.1|45739_46663_+	ribokinase	NA	NA	NA	NA	NA
WP_000635275.1|46875_47487_+	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	31.9	6.0e-14
WP_012896694.1|47634_48309_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	1.2e-127
WP_000162894.1|48386_49244_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	32.6	4.2e-29
WP_001105987.1|49588_50263_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_192940595.1|50299_50665_-	DUF4158 domain-containing protein	NA	A0A1B0V7H9	Salmonella_phage	40.4	5.9e-17
WP_002510754.1|51611_52010_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_002510753.1|52037_52322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021459891.1|52799_53480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019467797.1|53499_55143_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	30.1	1.8e-49
WP_019467798.1|55268_56615_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.5	1.4e-31
WP_002512555.1|56680_57355_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	92.4	2.8e-121
WP_070684299.1|58628_58877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_180363390.1|59314_59461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070684287.1|60528_61815_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	28.5	3.8e-26
WP_180363399.1|62420_62585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070684260.1|63531_64080_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_070625308.1|64165_65329_+	MFS transporter	NA	NA	NA	NA	NA
WP_070625312.1|65876_66077_+	mobilization protein	NA	NA	NA	NA	NA
WP_096754244.1|66833_67772_+	replication/maintenance protein RepL	NA	NA	NA	NA	NA
WP_156666418.1|67818_67986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053023791.1|71609_72179_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002484621.1|72528_73473_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002484615.1|73496_76178_-	MMPL family transporter	NA	NA	NA	NA	NA
77252:77311	attL	TCAGACCGTAGACAAACTACCGTTATAACTTGAAAAAGTGTAACGGTAGTTTGTTTTTTT	NA	NA	NA	NA
WP_002479755.1|77368_78703_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-112
WP_070684448.1|80115_80247_+	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_070626401.1|81259_81787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_192940596.1|82317_87651_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_070626066.1|88097_89702_+	L-lactate permease	NA	NA	NA	NA	NA
WP_070626064.1|89836_91336_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_070626062.1|91370_91472_+	DUF2648 domain-containing protein	NA	NA	NA	NA	NA
WP_070625503.1|92556_93060_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002479520.1|93127_93367_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_070683954.1|93382_93931_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_119559162.1|95657_95990_+	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	54.8	2.6e-11
WP_070724873.1|96743_97064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060804198.1|97757_97946_+	CsbD family protein	NA	NA	NA	NA	NA
WP_070684156.1|99112_100771_-	alpha-glucosidase	NA	NA	NA	NA	NA
WP_070724540.1|101084_102080_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.5	1.4e-23
WP_070724539.1|102233_103634_+	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_083317880.1|103712_104000_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A1B1P773	Bacillus_phage	43.3	3.0e-08
WP_083317881.1|103995_104076_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
107080:108648	attR	TCAGACCGTAGACAAACTACCGTTATAACTTGAAAAAGTGTAACGGTAGTTTGTTTTTTTTATGAAATTTTCGAAAATATGTATAAAAATCTTTATAATAGAAGTCCTCACGGACTCTTATGTAAGCCACATAGATACTTTTTTCAAATTCATCGCAGCACAAGTAAACATCGTATCCATTGTCACCTTTTCTAAACTGCGGAAACGTGTCCATCTCATACCATGTTGCTCTTTAGCGTCACCAAATCGTCTTTCTATTGTTTGGCTTCTCATTTTATATATTTTTTTAATTGAATCCATAAACCTTAAATCTTCAACTATATCTAAATCATCTTGCCATACGTGCCTTTGGATTTGTTTTTGACACTGTTTATTTTCAGTGCATTTGTTCAATAGTGGGCATTCACGACATGTGTCAGAGTTTGACATATATAGTCTGTGCCCAGTTGGCATTGTTCTTTTGTAAGTTAAAAACTCATCATTAGGACAGATATAGCTATCATAATATTCATCGTAGATGAAATCGCGAATTTTGAAGAAACCTTCTTTTCCTTTTGGTCGAGTATACGGCATCACAGGTATCATTAATTTTTCAATAAGATAGTGTGCATTAGCTGGAGTTTTATATCCAGAATCGACTGCTACATATCTCGCTTTTAAACCTGCTTTCTCCATTCTTTCTATCATAGGTTTCAATTGCGTACTATCATGGATATTTCCTGGAGTGACGTGTGAATCTAAAATGAAGCCGTGTCTATCGACACATGCATGTAGCGAATAGGCAAATTGCTTTTCTCTCTCGCTCTTTACATAATAACCAGACTCTGGATCAGTTTTGCTTTCTTTTATATATTTAGTTTTCGCTTCCTTTTTCTTTTTTATAGGCTTTTTTCCATCGGCTTTTCTTAGAAGATTTACTTCATCATCCAATTCTTTTTGGTATGCTTTGGCTTCAATTTGAACAACTTTCTTAATGTATTTATTTTTATTAGCATTGGCTTTAATATGAGTTGAATCGATAAAAATTTGTTCGGTATTAATAAGGTTGTTTTCAAAAGCAATTTTTAAGATGTGTTGGAAGATTTCTTCAAATAACTTATTATCATAAAATCGGCGGGTGTAGTTTTTGCTAAAAGTACCAAAATGAGGAACTTTATCAAAGAATCCATAACCTAAGTACCATCGGTACGCTACATTAGTGTGAATTTCTTTTATAGTTTGTCTCATAGATTTAATGCCGAATAATTTTTGAATCAGAAGGATTTTTACTAAAATTACAGGGTCAATAGAGGGTCTGCCATTATCTAAGCAATATTTATCTTTCACTAAATCATAAACAAAGTTAAGATCTAATACTTTTTCAACTTTACGTAACAAGTGATCATCAGGAACTAATTGAGATATTGAAATCATTTCAAGTTGTTCTCTGTTATTAGAAGATTTATTTAGCATACTATCACCTCATTATCTTATTACTATCATTATACAAGAAATGGGGAAAAGGTTATTATGTAAAATGTTAAAAAATAAAAAATGCCGACAAGTCCGTAGGACTTTGTCGACAGTCTG	NA	NA	NA	NA
