assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002357915.1_ASM235791v1	NZ_AP017610	Escherichia coli strain 20Ec-P-124	1	841369-841510	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|36aa|up_4|NZ_AP017610.1_837591_837699_-,NA	NA|354aa|up_9|NZ_AP017610.1_830832_831894_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_AP017610.1_831890_832622_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_AP017610.1_832636_835096_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_AP017610.1_835146_835713_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_AP017610.1_836102_837386_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_AP017610.1_837591_837699_-	NA	NA|135aa|up_3|NZ_AP017610.1_838079_838484_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_AP017610.1_838477_838825_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_AP017610.1_838824_840591_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_AP017610.1_840606_841323_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_AP017610.1_841683_844485_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_AP017610.1_844499_845717_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_AP017610.1_845810_846977_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_AP017610.1_846976_847846_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NZ_AP017610.1_848085_849201_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|NZ_AP017610.1_850529_852098_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|NZ_AP017610.1_852113_853253_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|NZ_AP017610.1_853267_853381_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|NZ_AP017610.1_853380_853674_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|NZ_AP017610.1_853823_854228_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCF_002357915.1_ASM235791v1	NZ_AP017610	Escherichia coli strain 20Ec-P-124	2	2978719-2979967	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,19,19	20	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_AP017610.1_2970592_2971354_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_AP017610.1_2971334_2972384_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_AP017610.1_2972380_2972860_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_AP017610.1_2972859_2973570_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_AP017610.1_2973588_2973900_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_AP017610.1_2974093_2974417_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_AP017610.1_2974466_2975072_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_AP017610.1_2975071_2976499_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_AP017610.1_2976500_2977409_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_AP017610.1_2977660_2978698_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_AP017610.1_2980063_2980357_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_AP017610.1_2980353_2981277_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_AP017610.1_2981273_2981924_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_AP017610.1_2981905_2982652_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_AP017610.1_2982662_2983718_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_AP017610.1_2983732_2984269_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_AP017610.1_2984265_2985828_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|886aa|down_7|NZ_AP017610.1_2985925_2988583_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_AP017610.1_2988820_2988973_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_AP017610.1_2989236_2989971_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002357915.1_ASM235791v1	NZ_AP017610	Escherichia coli strain 20Ec-P-124	3	3005669-3006185	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Unclear	CGGTTTATCCCCGCTGACGTGGGGAACTC,CGGTTTATCCCCGCTGNCGNGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGACGTGGGGAACTC	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	8,8,7,7	8	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|424aa|up_9|NZ_AP017610.1_2994314_2995586_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_AP017610.1_2995576_2995837_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_AP017610.1_2995853_2996429_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_AP017610.1_2996575_2997436_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_AP017610.1_2997432_2998212_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_AP017610.1_2998189_2999599_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_AP017610.1_2999620_3001075_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_AP017610.1_3001144_3001930_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_AP017610.1_3002248_3003526_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_AP017610.1_3003552_3005031_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_AP017610.1_3006524_3007196_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_AP017610.1_3008423_3009722_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_AP017610.1_3009808_3011446_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NZ_AP017610.1_3011673_3012465_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|NZ_AP017610.1_3012560_3014795_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_5|NZ_AP017610.1_3014842_3016144_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_6|NZ_AP017610.1_3016200_3018957_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_7|NZ_AP017610.1_3019187_3020528_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_8|NZ_AP017610.1_3020548_3021889_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|451aa|down_9|NZ_AP017610.1_3021890_3023243_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter
GCF_002357915.1_ASM235791v1	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1	1593-1847	1	PILER-CR	no		DEDDh	Orphan	GTATGCTGTCAGCGGT	16	0	0	NA	NA	NA	3	3	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|405aa|up_0|NZ_AP017612.1_100_1315_+,NA|71aa|down_0|NZ_AP017612.1_1894_2107_-,NA|112aa|down_1|NZ_AP017612.1_2106_2442_-,NA|92aa|down_2|NZ_AP017612.1_2657_2933_-,NA|130aa|down_5|NZ_AP017612.1_4279_4669_-,NA|247aa|down_6|NZ_AP017612.1_4689_5430_-,NA|67aa|down_9|NZ_AP017612.1_7229_7430_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|405aa|up_0|NZ_AP017612.1_100_1315_+	NA	NA|71aa|down_0|NZ_AP017612.1_1894_2107_-	NA	NA|112aa|down_1|NZ_AP017612.1_2106_2442_-	NA	NA|92aa|down_2|NZ_AP017612.1_2657_2933_-	NA	NA|142aa|down_3|NZ_AP017612.1_2988_3414_-	PHA02053, PHA02053, hypothetical protein	NA|139aa|down_4|NZ_AP017612.1_3699_4116_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|130aa|down_5|NZ_AP017612.1_4279_4669_-	NA	NA|247aa|down_6|NZ_AP017612.1_4689_5430_-	NA	NA|275aa|down_7|NZ_AP017612.1_5475_6300_-	pfam18406, DUF1281_C, Ferredoxin-like domain in Api92-like protein	NA|277aa|down_8|NZ_AP017612.1_6395_7226_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|67aa|down_9|NZ_AP017612.1_7229_7430_-	NA
