The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	382362	398771	2808921	integrase,terminase,coat	Staphylococcus_phage(94.12%)	23	384538:384552	399640:399654
WP_001052483.1|382362_382554_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|382797_383094_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|383114_383618_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|383669_383912_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
384538:384552	attL	AATAATATATAATTT	NA	NA	NA	NA
WP_000270122.1|385406_386624_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	95.2	5.4e-216
WP_001101554.1|386917_387439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000700230.1|387564_388260_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000608987.1|388404_388617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000867969.1|388649_388922_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	83.7	6.1e-35
WP_000784888.1|388933_389080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001060744.1|389072_389282_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	92.8	1.3e-29
WP_031904328.1|389284_389584_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	55.7	1.1e-18
WP_033854769.1|389658_391272_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.4	5.1e-246
WP_000148371.1|391442_392246_+	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.8	2.1e-152
WP_001149387.1|392232_392505_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_001161659.1|393494_393836_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	96.5	2.1e-56
WP_000771356.1|394720_395248_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.2e-87
WP_000358778.1|395250_395592_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_096391854.1|395588_396158_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.2	9.6e-99
WP_000801979.1|396434_397403_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001795626.1|398250_398403_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|398473_398584_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|398585_398771_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
399640:399654	attR	AATAATATATAATTT	NA	NA	NA	NA
>prophage 2
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	752996	765937	2808921	transposase	Staphylococcus_phage(30.0%)	15	NA	NA
WP_000244412.1|752996_754052_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|754051_754738_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|754712_755186_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|755527_755968_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|756247_756832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|756930_757644_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|757647_758067_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|758068_758737_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|759087_759681_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|759664_760816_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_001175781.1|760815_761424_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_096391862.1|761573_762746_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	5.0e-134
WP_001028144.1|762875_764315_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|764315_764708_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|764764_765937_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 3
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	777363	791981	2808921		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663022.1|777363_778422_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.1e-20
WP_000197271.1|778772_779315_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|779937_780855_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|780945_781047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|781124_782630_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|782970_783471_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|783490_784357_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|785157_785556_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|785518_787624_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|787741_788713_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|789114_789270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876321.1|789308_790280_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	2.1e-138
WP_001245579.1|790266_791223_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|791219_791981_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	842615	860781	2808921	integrase,terminase,coat	Staphylococcus_phage(70.59%)	23	842975:842990	849044:849059
WP_096391864.1|842615_844988_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	2.7e-94
842975:842990	attL	AAAAGGTGAACATAAA	NA	NA	NA	NA
WP_001085185.1|845009_845474_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000121224.1|846037_847144_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	2.0e-76
WP_078064262.1|847149_847797_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|847954_848161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|848196_848424_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784892.1|848420_848594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|848560_848764_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403838.1|848765_849149_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
849044:849059	attR	AAAAGGTGAACATAAA	NA	NA	NA	NA
WP_053819376.1|849149_849458_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.4	8.7e-22
WP_000148371.1|851300_852104_+	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.8	2.1e-152
WP_001149387.1|852090_852363_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_001019770.1|852364_853006_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.8e-109
WP_001161659.1|853352_853694_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	96.5	2.1e-56
WP_000846292.1|853705_854284_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.6e-29
WP_000448775.1|854301_854520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771356.1|854570_855098_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.2e-87
WP_000358778.1|855100_855442_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_096391866.1|855438_856008_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.3	1.9e-99
WP_001035599.1|856162_856867_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001035616.1|857743_858304_-	DUF4888 domain-containing protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
WP_000278088.1|859091_859892_+	staphylococcal enterotoxin type C3	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
WP_001574561.1|860058_860781_-	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	1.2e-26
>prophage 5
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	1052862	1061335	2808921		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1052862_1053345_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1053331_1054456_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1054459_1055164_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_096391873.1|1055163_1055427_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1055428_1056100_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032728.1|1056092_1058282_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483713.1|1058260_1059745_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1059737_1060766_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1060768_1061335_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	1596812	1605124	2808921	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_000189275.1|1596812_1597580_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	7.8e-19
WP_000924214.1|1597723_1598614_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1598623_1599970_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1600083_1601184_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1601186_1601864_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1601994_1603101_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1603324_1605124_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	1674255	1683298	2808921	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1674255_1674774_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1674795_1677069_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1677271_1679551_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1679825_1680086_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1680104_1681244_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1681266_1682292_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1682293_1683298_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	1808816	1886401	2808921	transposase,tRNA,protease	Staphylococcus_phage(94.55%)	70	NA	NA
WP_001050545.1|1808816_1815377_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	2.3e-305
WP_000836465.1|1815702_1816014_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001804761.1|1816035_1818453_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1818740_1819922_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1820031_1820985_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1820981_1821545_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1821664_1822066_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1823644_1824472_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1824474_1824594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1824705_1825707_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1825828_1826293_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1826305_1827487_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493896.1|1827497_1828130_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_000077344.1|1828136_1829180_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261681.1|1829660_1831163_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221180.1|1831685_1832000_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	9.8e-53
WP_000989121.1|1831999_1833292_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1833309_1833705_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1833999_1834854_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1835129_1835354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1835552_1836023_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1836135_1836579_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1836565_1837009_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1837304_1837940_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1838379_1839093_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1839352_1839655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1839910_1840276_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623472.1|1840272_1840626_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
WP_000453320.1|1842709_1843543_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1843754_1844663_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1844787_1845981_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1846351_1847944_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1848079_1848565_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1848939_1849686_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1849690_1850164_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1850229_1850487_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778525.1|1850483_1851485_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000348359.1|1851489_1852968_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	7.6e-281
WP_011443643.1|1853126_1853582_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1853884_1854535_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1854615_1855611_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1855686_1856313_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1856353_1856698_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_096391891.1|1856795_1857347_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1857564_1858206_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1858319_1858505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1858506_1858683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1858693_1859077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1859680_1859824_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1860026_1860122_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1860244_1860346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1860693_1861071_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000028669.1|1867740_1869297_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1869460_1869595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1869659_1870379_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038867.1|1870499_1871219_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1871276_1871999_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1872123_1872831_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092766.1|1873795_1874362_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	9.5e-99
WP_000586140.1|1874835_1875534_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581553.1|1875530_1876292_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	99.6	1.7e-130
WP_001096791.1|1876288_1876981_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_096391893.1|1877003_1878377_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	99.8	1.1e-257
WP_000504439.1|1878386_1878905_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1878920_1880165_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1880157_1883151_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1883215_1883359_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1884095_1884239_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1884480_1885464_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1885465_1886401_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 9
NZ_AP014921	Staphylococcus aureus strain JH4899	2808921	1982735	2067792	2808921	head,protease,holin,portal,integrase,terminase,tail,capsid	Staphylococcus_phage(90.79%)	107	2041237:2041254	2065776:2065793
WP_000827748.1|1982735_1983902_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1983932_1984259_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1984550_1984724_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1984704_1985307_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|1985577_1986399_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|1986391_1987861_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|1988044_1989121_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177823.1|1989140_1989935_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1990010_1990118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1990128_1991691_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|1991895_1992993_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|1993364_1993925_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1993977_1994907_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1995101_1995275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|1995326_1996706_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1996825_1997854_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001820618.1|1998123_1998261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001284657.1|1998312_1998693_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096379.1|1998682_2000440_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733625.1|2000546_2001392_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
WP_000612781.1|2001700_2002111_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	50.4	2.4e-27
WP_000410572.1|2003527_2003893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000026852.1|2003901_2005965_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_001820623.1|2005967_2007080_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
WP_000267034.1|2008142_2008316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2008766_2009807_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2009863_2010706_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2010702_2011260_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2011319_2011844_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2011964_2012528_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2012593_2013334_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2013333_2014206_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2014202_2014883_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2014883_2015780_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2015776_2016157_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2016415_2016592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2016834_2016933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2017132_2018419_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669721.1|2018742_2020797_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|2021795_2021975_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2022285_2022546_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2022598_2022949_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|2024445_2024937_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|2025127_2025883_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2025894_2026149_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2026200_2026308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2026360_2026537_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_025174055.1|2026739_2027513_-	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	4.0e-148
WP_000340977.1|2027933_2028308_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040255.1|2028363_2028651_-	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_001153681.1|2028697_2028850_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_096391898.1|2028839_2032625_-	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.7	0.0e+00
WP_000567391.1|2032640_2034125_-|tail	phage tail family protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
WP_000504572.1|2034121_2038633_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	88.0	0.0e+00
WP_001789580.1|2038689_2038851_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|2038877_2039228_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_094969686.1|2039278_2039584_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	93.2	1.5e-29
WP_000985141.1|2039544_2040186_-|tail	phage tail protein	tail	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
WP_000565498.1|2040186_2040594_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_096391900.1|2040590_2040995_-	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	99.3	7.3e-69
WP_000755150.1|2040991_2041354_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2041237:2041254	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2041337_2041622_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2041611_2041896_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154564.1|2041915_2043061_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.5	2.8e-214
WP_000861911.1|2043083_2043821_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
WP_000025268.1|2043804_2044968_-|portal	phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
WP_000625087.1|2044983_2046645_-|terminase	terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2046641_2046986_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2047116_2047416_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2047647_2048064_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001557462.1|2048091_2048292_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000595265.1|2048291_2048441_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195784.1|2048437_2048644_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282071.1|2048640_2048886_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	97.5	4.2e-35
WP_000185693.1|2048922_2049459_-	dUTP diphosphatase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001065108.1|2049455_2049701_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000178987.1|2049715_2049964_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_000111491.1|2049960_2050218_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000101279.1|2050217_2050589_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000401969.1|2050601_2051006_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2051014_2051233_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|2051239_2052133_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|2052162_2052633_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_078065370.1|2052633_2053251_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	99.4	1.2e-86
WP_000138478.1|2053331_2054252_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	8.6e-166
WP_000700555.1|2054253_2056197_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2056205_2056469_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2056477_2056738_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2056742_2057045_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2057139_2057301_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2057297_2057621_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|2057675_2058056_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148856.1|2058042_2058240_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_001148587.1|2058255_2059005_-	phage antirepressor KilAC domain-containing protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
WP_000772137.1|2059061_2059271_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|2059263_2059404_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435349.1|2059418_2059865_-	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
WP_000639923.1|2059877_2060120_-	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001083975.1|2060283_2061000_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|2061011_2061866_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000345949.1|2061939_2062086_+	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
WP_000109189.1|2062082_2062268_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000705241.1|2062337_2062505_+	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
WP_000440838.1|2062644_2063349_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
WP_000857198.1|2063542_2064580_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595324.1|2065698_2066715_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2065776:2065793	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2066736_2067792_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
