assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002356095.1_ASM235609v1	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	1	113395-113607	1	CRISPRCasFinder	no	Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG	RT,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG	Type IV-A	CCGCTCACCCCCGCGCACGCGGGAAATAC	29	0	0	NA	NA	NA	3	3	TypeIV-A	RT,WYL,DEDDh,cas3,csa3,DinG,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6	NA|95aa|up_9|NZ_AP015030.1_105953_106238_-,NA|167aa|up_8|NZ_AP015030.1_106249_106750_-,NA|118aa|up_7|NZ_AP015030.1_107975_108329_-,NA|348aa|up_5|NZ_AP015030.1_109621_110665_-,NA|101aa|up_4|NZ_AP015030.1_110685_110988_-,NA|100aa|up_3|NZ_AP015030.1_111084_111384_-,NA|62aa|up_1|NZ_AP015030.1_112415_112601_-,NA|116aa|up_0|NZ_AP015030.1_112905_113253_-,csf5gr6|237aa|down_3|NZ_AP015030.1_116765_117476_-,NA|126aa|down_5|NZ_AP015030.1_120144_120522_-,NA|103aa|down_8|NZ_AP015030.1_121911_122220_-,NA|82aa|down_9|NZ_AP015030.1_122348_122594_-	NA|95aa|up_9|NZ_AP015030.1_105953_106238_-	NA	NA|167aa|up_8|NZ_AP015030.1_106249_106750_-	NA	NA|118aa|up_7|NZ_AP015030.1_107975_108329_-	NA	NA|364aa|up_6|NZ_AP015030.1_108379_109471_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|348aa|up_5|NZ_AP015030.1_109621_110665_-	NA	NA|101aa|up_4|NZ_AP015030.1_110685_110988_-	NA	NA|100aa|up_3|NZ_AP015030.1_111084_111384_-	NA	NA|121aa|up_2|NZ_AP015030.1_111950_112313_-	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT	NA|62aa|up_1|NZ_AP015030.1_112415_112601_-	NA	NA|116aa|up_0|NZ_AP015030.1_112905_113253_-	NA	csf3gr5|223aa|down_0|NZ_AP015030.1_114333_115002_-	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3	csf2gr7|348aa|down_1|NZ_AP015030.1_115001_116045_-	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2	csf1gr8|241aa|down_2|NZ_AP015030.1_116059_116782_-	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1	csf5gr6|237aa|down_3|NZ_AP015030.1_116765_117476_-	NA	DinG|751aa|down_4|NZ_AP015030.1_117447_119700_+	TIGR03117, cas_csf4, CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4	NA|126aa|down_5|NZ_AP015030.1_120144_120522_-	NA	NA|164aa|down_6|NZ_AP015030.1_120552_121044_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|245aa|down_7|NZ_AP015030.1_121161_121896_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|103aa|down_8|NZ_AP015030.1_121911_122220_-	NA	NA|82aa|down_9|NZ_AP015030.1_122348_122594_-	NA
GCF_002356095.1_ASM235609v1	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	2	113760-114278	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG	RT,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG	Type IV-A	CCGCTCACCCCCGCGCACGCGGGAAATAC,CCGCTCACCCCCGCGCACGCGGGAAATAC,CCGCTCACCCCCGCGCACGCGGGAAATAC	29,29,29	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeIV-A	RT,WYL,DEDDh,cas3,csa3,DinG,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6	NA|95aa|up_9|NZ_AP015030.1_105953_106238_-,NA|167aa|up_8|NZ_AP015030.1_106249_106750_-,NA|118aa|up_7|NZ_AP015030.1_107975_108329_-,NA|348aa|up_5|NZ_AP015030.1_109621_110665_-,NA|101aa|up_4|NZ_AP015030.1_110685_110988_-,NA|100aa|up_3|NZ_AP015030.1_111084_111384_-,NA|62aa|up_1|NZ_AP015030.1_112415_112601_-,NA|116aa|up_0|NZ_AP015030.1_112905_113253_-,csf5gr6|237aa|down_3|NZ_AP015030.1_116765_117476_-,NA|126aa|down_5|NZ_AP015030.1_120144_120522_-,NA|103aa|down_8|NZ_AP015030.1_121911_122220_-,NA|82aa|down_9|NZ_AP015030.1_122348_122594_-	NA|95aa|up_9|NZ_AP015030.1_105953_106238_-	NA	NA|167aa|up_8|NZ_AP015030.1_106249_106750_-	NA	NA|118aa|up_7|NZ_AP015030.1_107975_108329_-	NA	NA|364aa|up_6|NZ_AP015030.1_108379_109471_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|348aa|up_5|NZ_AP015030.1_109621_110665_-	NA	NA|101aa|up_4|NZ_AP015030.1_110685_110988_-	NA	NA|100aa|up_3|NZ_AP015030.1_111084_111384_-	NA	NA|121aa|up_2|NZ_AP015030.1_111950_112313_-	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT	NA|62aa|up_1|NZ_AP015030.1_112415_112601_-	NA	NA|116aa|up_0|NZ_AP015030.1_112905_113253_-	NA	csf3gr5|223aa|down_0|NZ_AP015030.1_114333_115002_-	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3	csf2gr7|348aa|down_1|NZ_AP015030.1_115001_116045_-	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2	csf1gr8|241aa|down_2|NZ_AP015030.1_116059_116782_-	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1	csf5gr6|237aa|down_3|NZ_AP015030.1_116765_117476_-	NA	DinG|751aa|down_4|NZ_AP015030.1_117447_119700_+	TIGR03117, cas_csf4, CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4	NA|126aa|down_5|NZ_AP015030.1_120144_120522_-	NA	NA|164aa|down_6|NZ_AP015030.1_120552_121044_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|245aa|down_7|NZ_AP015030.1_121161_121896_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|103aa|down_8|NZ_AP015030.1_121911_122220_-	NA	NA|82aa|down_9|NZ_AP015030.1_122348_122594_-	NA
GCF_002356095.1_ASM235609v1	NZ_AP015029	Pseudomonas putida strain KF715 chromosome 1	1	881153-881264	1	CRISPRCasFinder	no		RT,WYL,DEDDh,cas3,csa3,DinG	Orphan	TCGAGCCTTCTGCAGTCCCTGTGGGAGCGGG	31	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,csa3,DinG,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6	NA|46aa|up_4|NZ_AP015029.1_877442_877580_+,NA	NA|192aa|up_9|NZ_AP015029.1_872350_872926_+	pfam08291, Peptidase_M15_3, Peptidase M15	NA|306aa|up_8|NZ_AP015029.1_872865_873783_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|205aa|up_7|NZ_AP015029.1_874028_874643_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|309aa|up_6|NZ_AP015029.1_874921_875848_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|405aa|up_5|NZ_AP015029.1_876039_877254_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|46aa|up_4|NZ_AP015029.1_877442_877580_+	NA	NA|386aa|up_3|NZ_AP015029.1_877662_878820_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|319aa|up_2|NZ_AP015029.1_878828_879785_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|172aa|up_1|NZ_AP015029.1_879771_880287_-	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|209aa|up_0|NZ_AP015029.1_880458_881085_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|351aa|down_0|NZ_AP015029.1_881315_882368_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|804aa|down_1|NZ_AP015029.1_882424_884836_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|406aa|down_2|NZ_AP015029.1_884968_886186_-	pfam11902, DUF3422, Protein of unknown function (DUF3422)	NA|477aa|down_3|NZ_AP015029.1_886402_887833_-	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like	NA|500aa|down_4|NZ_AP015029.1_887846_889346_-	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	NA|130aa|down_5|NZ_AP015029.1_889439_889829_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|207aa|down_6|NZ_AP015029.1_891070_891691_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|273aa|down_7|NZ_AP015029.1_891796_892615_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|399aa|down_8|NZ_AP015029.1_892651_893848_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|366aa|down_9|NZ_AP015029.1_893887_894985_+	PRK10983, PRK10983, AI-2E family transporter YdiK
GCF_002356095.1_ASM235609v1	NZ_AP015029	Pseudomonas putida strain KF715 chromosome 1	2	3780144-3780284	2	CRISPRCasFinder	no	RT	RT,WYL,DEDDh,cas3,csa3,DinG	Unclear	CTGTAGGAGCTGGCTTGCCTGCGATGGGCCGCAAAGCGGCCCCATTGGCCATA	53	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,csa3,DinG,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6	NA,NA|239aa|down_0|NZ_AP015029.1_3780334_3781051_-,NA|60aa|down_1|NZ_AP015029.1_3781265_3781445_+,NA|81aa|down_3|NZ_AP015029.1_3783805_3784048_+	NA|450aa|up_9|NZ_AP015029.1_3770682_3772032_+	TIGR00895, transport_protein, benzoate transport	NA|421aa|up_8|NZ_AP015029.1_3772053_3773316_+	PRK13367, PRK13367, gallate dioxygenase	NA|398aa|up_7|NZ_AP015029.1_3773359_3774553_-	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold	NA|259aa|up_6|NZ_AP015029.1_3774671_3775448_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|239aa|up_5|NZ_AP015029.1_3775444_3776161_+	PRK09262, PRK09262, hypothetical protein; Provisional	NA|362aa|up_4|NZ_AP015029.1_3776163_3777249_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|153aa|up_3|NZ_AP015029.1_3777272_3777731_-	pfam11911, DUF3429, Protein of unknown function (DUF3429)	NA|187aa|up_2|NZ_AP015029.1_3777766_3778327_-	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed	NA|138aa|up_1|NZ_AP015029.1_3778311_3778725_-	pfam04134, DUF393, Protein of unknown function, DUF393	NA|388aa|up_0|NZ_AP015029.1_3778931_3780095_+	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|239aa|down_0|NZ_AP015029.1_3780334_3781051_-	NA	NA|60aa|down_1|NZ_AP015029.1_3781265_3781445_+	NA	RT|420aa|down_2|NZ_AP015029.1_3782128_3783388_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|81aa|down_3|NZ_AP015029.1_3783805_3784048_+	NA	NA|88aa|down_4|NZ_AP015029.1_3784209_3784473_+	pfam11275, DUF3077, Protein of unknown function (DUF3077)	NA|185aa|down_5|NZ_AP015029.1_3784533_3785088_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|269aa|down_6|NZ_AP015029.1_3785186_3785993_-	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|239aa|down_7|NZ_AP015029.1_3786336_3787053_-	cd05233, SDR_c, classical (c) SDRs	NA|162aa|down_8|NZ_AP015029.1_3787098_3787584_-	pfam09933, DUF2165, Predicted small integral membrane protein (DUF2165)	NA|120aa|down_9|NZ_AP015029.1_3788901_3789261_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
GCF_002356095.1_ASM235609v1	NZ_AP015029	Pseudomonas putida strain KF715 chromosome 1	3	4328709-4328782	3	CRISPRCasFinder	no		RT,WYL,DEDDh,cas3,csa3,DinG	Orphan	TTTACGTTTACGTAAAGGTGATGA	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,csa3,DinG,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6	NA,NA|104aa|down_5|NZ_AP015029.1_4335443_4335755_+	NA|689aa|up_9|NZ_AP015029.1_4309410_4311477_+	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|925aa|up_8|NZ_AP015029.1_4311473_4314248_+	PRK14511, PRK14511, malto-oligosyltrehalose synthase	NA|95aa|up_7|NZ_AP015029.1_4314262_4314547_+	pfam11154, DUF2934, Protein of unknown function (DUF2934)	NA|718aa|up_6|NZ_AP015029.1_4314700_4316854_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|359aa|up_5|NZ_AP015029.1_4317680_4318757_+	pfam03797, Autotransporter, Autotransporter beta-domain	NA|737aa|up_4|NZ_AP015029.1_4318873_4321084_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|1106aa|up_3|NZ_AP015029.1_4321084_4324402_-	TIGR02456, Trehalose_synthase, trehalose synthase	NA|673aa|up_2|NZ_AP015029.1_4324563_4326582_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|54aa|up_1|NZ_AP015029.1_4326722_4326884_+	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|561aa|up_0|NZ_AP015029.1_4326962_4328645_-	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|388aa|down_0|NZ_AP015029.1_4328884_4330048_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|536aa|down_1|NZ_AP015029.1_4330067_4331675_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|272aa|down_2|NZ_AP015029.1_4331678_4332494_+	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated	NA|651aa|down_3|NZ_AP015029.1_4332490_4334443_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|218aa|down_4|NZ_AP015029.1_4334659_4335313_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|104aa|down_5|NZ_AP015029.1_4335443_4335755_+	NA	NA|172aa|down_6|NZ_AP015029.1_4336190_4336706_+	pfam16220, DUF4880, Domain of unknown function (DUF4880)	NA|326aa|down_7|NZ_AP015029.1_4336725_4337703_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|339aa|down_8|NZ_AP015029.1_4337866_4338883_+	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa	NA|285aa|down_9|NZ_AP015029.1_4338942_4339797_-	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1
GCF_002356095.1_ASM235609v1	NZ_AP015029	Pseudomonas putida strain KF715 chromosome 1	4	5376662-5376757	4	CRISPRCasFinder	no	csa3	RT,WYL,DEDDh,cas3,csa3,DinG	Type I-A	TCCAGCGTGCCGCCATCAACCTGC	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,csa3,DinG,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6	NA|99aa|up_7|NZ_AP015029.1_5369727_5370024_-,NA|161aa|down_6|NZ_AP015029.1_5384740_5385223_+,NA|129aa|down_7|NZ_AP015029.1_5385236_5385623_+	NA|386aa|up_9|NZ_AP015029.1_5367942_5369100_-	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|194aa|up_8|NZ_AP015029.1_5369101_5369683_-	smart00867, YceI, YceI-like domain	NA|99aa|up_7|NZ_AP015029.1_5369727_5370024_-	NA	NA|361aa|up_6|NZ_AP015029.1_5370020_5371103_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|296aa|up_5|NZ_AP015029.1_5371178_5372066_-	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain	NA|252aa|up_4|NZ_AP015029.1_5372225_5372981_+	COG3176, COG3176, Putative hemolysin [General function prediction only]	NA|263aa|up_3|NZ_AP015029.1_5372980_5373769_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|196aa|up_2|NZ_AP015029.1_5373837_5374425_-	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|101aa|up_1|NZ_AP015029.1_5374575_5374878_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|350aa|up_0|NZ_AP015029.1_5374895_5375945_+	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|332aa|down_0|NZ_AP015029.1_5377365_5378361_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|297aa|down_1|NZ_AP015029.1_5378410_5379301_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|200aa|down_2|NZ_AP015029.1_5379404_5380004_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|199aa|down_3|NZ_AP015029.1_5380200_5380797_+	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|685aa|down_4|NZ_AP015029.1_5381047_5383102_+	cd01948, EAL, EAL domain	NA|446aa|down_5|NZ_AP015029.1_5383260_5384598_+	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism]	NA|161aa|down_6|NZ_AP015029.1_5384740_5385223_+	NA	NA|129aa|down_7|NZ_AP015029.1_5385236_5385623_+	NA	NA|476aa|down_8|NZ_AP015029.1_5385733_5387161_+	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion]	NA|355aa|down_9|NZ_AP015029.1_5387181_5388246_+	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only]
