assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002355835.1_ASM235583v1	NZ_AP017459	Candidatus Endomicrobium trichonymphae strain Rs-D17	1	42250-42351	1	CRISPRCasFinder	no		cas9,cas1,cas3,cas5,cas8c,cas7,cas4,cas2,DEDDh	Orphan	AAGGCACGTACTCCCTATTGCTACTACTACTACTGC	36	1	1	42286-42315	NZ_AP017459.1_94876-94847	NA	1	1	Orphan	cas9,cas1,cas3,cas5,cas8c,cas7,cas4,cas2,DEDDh	NA|86aa|up_9|NZ_AP017459.1_26201_26459_+,NA|71aa|up_8|NZ_AP017459.1_26436_26649_+,NA|124aa|up_2|NZ_AP017459.1_33631_34003_+,NA|46aa|up_0|NZ_AP017459.1_41930_42068_-,NA|80aa|down_0|NZ_AP017459.1_42725_42965_-,NA|61aa|down_9|NZ_AP017459.1_48676_48859_+	NA|86aa|up_9|NZ_AP017459.1_26201_26459_+	NA	NA|71aa|up_8|NZ_AP017459.1_26436_26649_+	NA	NA|302aa|up_7|NZ_AP017459.1_27293_28199_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|909aa|up_6|NZ_AP017459.1_28195_30922_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|200aa|up_5|NZ_AP017459.1_30918_31518_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|424aa|up_4|NZ_AP017459.1_31704_32976_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|186aa|up_3|NZ_AP017459.1_33068_33626_+	pfam13274, DUF4065, Protein of unknown function (DUF4065)	NA|124aa|up_2|NZ_AP017459.1_33631_34003_+	NA	NA|769aa|up_1|NZ_AP017459.1_37047_39354_-	pfam13166, AAA_13, AAA domain	NA|46aa|up_0|NZ_AP017459.1_41930_42068_-	NA	NA|80aa|down_0|NZ_AP017459.1_42725_42965_-	NA	NA|76aa|down_1|NZ_AP017459.1_43609_43837_-	pfam02021, UPF0102, Uncharacterized protein family UPF0102	NA|211aa|down_2|NZ_AP017459.1_43941_44574_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|133aa|down_3|NZ_AP017459.1_45063_45462_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|234aa|down_4|NZ_AP017459.1_45607_46309_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|104aa|down_5|NZ_AP017459.1_46298_46610_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|77aa|down_6|NZ_AP017459.1_46614_46845_-	PRK00468, PRK00468, KH domain-containing protein	NA|85aa|down_7|NZ_AP017459.1_46880_47135_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|331aa|down_8|NZ_AP017459.1_47466_48459_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|61aa|down_9|NZ_AP017459.1_48676_48859_+	NA
GCF_002355835.1_ASM235583v1	NZ_AP017459	Candidatus Endomicrobium trichonymphae strain Rs-D17	2	90446-90537	2	CRISPRCasFinder	no	cas9,cas1	cas9,cas1,cas3,cas5,cas8c,cas7,cas4,cas2,DEDDh	 or Type II-C?, Type II-B,Type II-B,Type II-A,Type II-C	TTTAACGATGGCAACCATTGACT	23	0	0	NA	NA	NA	1	1	orTypeII-C?,TypeII-B,TypeII-B,TypeII-A,TypeII-C	cas9,cas1,cas3,cas5,cas8c,cas7,cas4,cas2,DEDDh	NA|103aa|up_6|NZ_AP017459.1_80650_80959_+,NA|102aa|up_5|NZ_AP017459.1_81884_82190_-,NA|62aa|up_3|NZ_AP017459.1_82669_82855_+,NA	NA|215aa|up_9|NZ_AP017459.1_75880_76525_+	cd16961, RMtype1_S_TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains	NA|1002aa|up_8|NZ_AP017459.1_76524_79530_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|67aa|up_7|NZ_AP017459.1_80018_80219_+	pfam00656, Peptidase_C14, Caspase domain	NA|103aa|up_6|NZ_AP017459.1_80650_80959_+	NA	NA|102aa|up_5|NZ_AP017459.1_81884_82190_-	NA	NA|89aa|up_4|NZ_AP017459.1_82222_82489_+	pfam13274, DUF4065, Protein of unknown function (DUF4065)	NA|62aa|up_3|NZ_AP017459.1_82669_82855_+	NA	NA|878aa|up_2|NZ_AP017459.1_83187_85821_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|651aa|up_1|NZ_AP017459.1_87054_89007_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|302aa|up_0|NZ_AP017459.1_89162_90068_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|45aa|down_0|NZ_AP017459.1_91832_91967_+	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|140aa|down_1|NZ_AP017459.1_91976_92396_+	pfam00825, Ribonuclease_P, Ribonuclease P	NA|75aa|down_2|NZ_AP017459.1_92399_92624_+	pfam01809, Haemolytic, Haemolytic domain	NA|520aa|down_3|NZ_AP017459.1_92643_94203_+	PRK01318, PRK01318, membrane protein insertase; Provisional	NA|78aa|down_4|NZ_AP017459.1_94259_94493_+	pfam14804, Jag_N, Jag N-terminus	NA|123aa|down_5|NZ_AP017459.1_94620_94989_+	pfam13380, CoA_binding_2, CoA binding domain	NA|206aa|down_6|NZ_AP017459.1_95252_95870_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|255aa|down_7|NZ_AP017459.1_96539_97304_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|287aa|down_8|NZ_AP017459.1_97341_98202_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|472aa|down_9|NZ_AP017459.1_98405_99821_+	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1
GCF_002355835.1_ASM235583v1	NZ_AP017459	Candidatus Endomicrobium trichonymphae strain Rs-D17	3	327357-335841	1,3,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas9,cas1,cas3,cas5,cas8c,cas7,cas4,cas2,DEDDh	 Type I-U?,Type I-C,Type I-U	GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT,GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT,GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT,GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT	32,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	98,128,128,98	128	TypeI-U?,TypeI-C,TypeI-U	cas9,cas1,cas3,cas5,cas8c,cas7,cas4,cas2,DEDDh	NA,NA|48aa|down_2|NZ_AP017459.1_337550_337694_-	NA|610aa|up_9|NZ_AP017459.1_315403_317233_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|up_8|NZ_AP017459.1_317577_317913_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|291aa|up_7|NZ_AP017459.1_317902_318775_+	cd01171, YXKO-related, B	cas3|815aa|up_6|NZ_AP017459.1_319195_321640_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|245aa|up_5|NZ_AP017459.1_321641_322376_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|670aa|up_4|NZ_AP017459.1_322375_324385_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|284aa|up_3|NZ_AP017459.1_324368_325220_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|213aa|up_2|NZ_AP017459.1_325224_325863_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|345aa|up_1|NZ_AP017459.1_325846_326881_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_AP017459.1_326890_327181_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|406aa|down_0|NZ_AP017459.1_335954_337172_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|69aa|down_1|NZ_AP017459.1_337390_337597_-	cd18084, RsmE-like, SPOUT superfamily RNA methyltransferase RsmE-like	NA|48aa|down_2|NZ_AP017459.1_337550_337694_-	NA	NA|400aa|down_3|NZ_AP017459.1_338849_340049_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|51aa|down_4|NZ_AP017459.1_340551_340704_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|63aa|down_5|NZ_AP017459.1_340815_341004_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|177aa|down_6|NZ_AP017459.1_341016_341547_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|145aa|down_7|NZ_AP017459.1_341618_342053_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|228aa|down_8|NZ_AP017459.1_342155_342839_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|152aa|down_9|NZ_AP017459.1_342917_343373_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed
