assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002355795.1_ASM235579v1	NZ_AP017630	Clostridium perfringens strain CBA7123	1	63343-63432	1	CRISPRCasFinder	no		csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	Orphan	TTAAAATACAGCATTAAATCTTT	23	0	0	NA	NA	NA	1	1	Orphan	csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	NA|168aa|up_5|NZ_AP017630.1_57285_57789_+,NA|384aa|down_2|NZ_AP017630.1_64346_65498_+,NA|60aa|down_3|NZ_AP017630.1_65648_65828_+,NA|61aa|down_4|NZ_AP017630.1_65896_66079_+	NA|195aa|up_9|NZ_AP017630.1_53246_53831_+	cd03112, CobW-like, cobalamin synthesis protein CobW	NA|298aa|up_8|NZ_AP017630.1_53833_54727_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|240aa|up_7|NZ_AP017630.1_54739_55459_+	TIGR03943, TIGR03943, TIGR03943 family protein	NA|263aa|up_6|NZ_AP017630.1_55724_56513_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|168aa|up_5|NZ_AP017630.1_57285_57789_+	NA	NA|429aa|up_4|NZ_AP017630.1_58227_59514_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|162aa|up_3|NZ_AP017630.1_59827_60313_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|548aa|up_2|NZ_AP017630.1_60504_62148_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|113aa|up_1|NZ_AP017630.1_62259_62598_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|up_0|NZ_AP017630.1_62695_63292_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|93aa|down_0|NZ_AP017630.1_63499_63778_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|93aa|down_1|NZ_AP017630.1_63793_64072_+	TIGR02862, Sigma-K_factor-processing_regulatory_protein_BofA, pro-sigmaK processing inhibitor BofA	NA|384aa|down_2|NZ_AP017630.1_64346_65498_+	NA	NA|60aa|down_3|NZ_AP017630.1_65648_65828_+	NA	NA|61aa|down_4|NZ_AP017630.1_65896_66079_+	NA	NA|232aa|down_5|NZ_AP017630.1_66151_66847_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|254aa|down_6|NZ_AP017630.1_67224_67986_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|389aa|down_7|NZ_AP017630.1_68274_69441_+	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins	NA|313aa|down_8|NZ_AP017630.1_69467_70406_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|228aa|down_9|NZ_AP017630.1_70425_71109_+	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)
GCF_002355795.1_ASM235579v1	NZ_AP017630	Clostridium perfringens strain CBA7123	2	1094522-1099454	2,1	CRISPRCasFinder,CRT	no	WYL,cas4,cas1,cas2,cas6,cas8b2,cas7,cas5	csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	Unclear	GTTTTATATTAACTATGAGGAATGTAAAT,GTTTTATATTAACTATGAGGAATGTAAAT	29,29	0	0	NA	NA	I-A:I-A	75,75	75	Unclear	csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	NA|130aa|up_9|NZ_AP017630.1_1083479_1083869_+,NA|230aa|up_8|NZ_AP017630.1_1083869_1084559_+,NA|186aa|down_2|NZ_AP017630.1_1101633_1102191_+,NA|116aa|down_8|NZ_AP017630.1_1110478_1110826_+	NA|130aa|up_9|NZ_AP017630.1_1083479_1083869_+	NA	NA|230aa|up_8|NZ_AP017630.1_1083869_1084559_+	NA	WYL|317aa|up_7|NZ_AP017630.1_1084807_1085758_+	pfam13280, WYL, WYL domain	cas4|174aa|up_6|NZ_AP017630.1_1085868_1086390_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|328aa|up_5|NZ_AP017630.1_1086391_1087375_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_4|NZ_AP017630.1_1087421_1087685_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|241aa|up_3|NZ_AP017630.1_1088076_1088799_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b2|446aa|up_2|NZ_AP017630.1_1088822_1090160_+	cd09744, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|296aa|up_1|NZ_AP017630.1_1090159_1091047_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|365aa|up_0|NZ_AP017630.1_1091050_1092145_+	TIGR02593, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5, N-terminal domain	NA|232aa|down_0|NZ_AP017630.1_1099838_1100534_-	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|235aa|down_1|NZ_AP017630.1_1100555_1101260_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|186aa|down_2|NZ_AP017630.1_1101633_1102191_+	NA	NA|383aa|down_3|NZ_AP017630.1_1103819_1104968_+	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional	NA|286aa|down_4|NZ_AP017630.1_1105024_1105882_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|264aa|down_5|NZ_AP017630.1_1106266_1107058_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|208aa|down_6|NZ_AP017630.1_1107812_1108436_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|542aa|down_7|NZ_AP017630.1_1108734_1110360_+	cd01948, EAL, EAL domain	NA|116aa|down_8|NZ_AP017630.1_1110478_1110826_+	NA	NA|53aa|down_9|NZ_AP017630.1_1111411_1111570_+	pfam11007, CotJA, Spore coat associated protein JA (CotJA)
GCF_002355795.1_ASM235579v1	NZ_AP017630	Clostridium perfringens strain CBA7123	3	2152717-2152826	3	CRISPRCasFinder	no		csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	Orphan	TATTTAAATCTATTACTTTACATAA	25	0	0	NA	NA	NA	1	1	Orphan	csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	NA,NA|121aa|down_0|NZ_AP017630.1_2152896_2153259_-,NA|116aa|down_2|NZ_AP017630.1_2154100_2154448_-,NA|201aa|down_4|NZ_AP017630.1_2154853_2155456_-,NA|117aa|down_5|NZ_AP017630.1_2155430_2155781_-,NA|104aa|down_6|NZ_AP017630.1_2155827_2156139_-	NA|136aa|up_9|NZ_AP017630.1_2146513_2146921_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_8|NZ_AP017630.1_2147039_2147429_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|166aa|up_7|NZ_AP017630.1_2147513_2148011_-	pfam12685, SpoIIIAH, SpoIIIAH-like protein	NA|202aa|up_6|NZ_AP017630.1_2148036_2148642_-	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG	NA|186aa|up_5|NZ_AP017630.1_2148656_2149214_-	TIGR02896, Stage_III_sporulation_protein_AF, stage III sporulation protein AF	NA|391aa|up_4|NZ_AP017630.1_2149221_2150394_-	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE	NA|129aa|up_3|NZ_AP017630.1_2150404_2150791_-	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD	NA|66aa|up_2|NZ_AP017630.1_2150877_2151075_-	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC	NA|172aa|up_1|NZ_AP017630.1_2151150_2151666_-	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB	NA|295aa|up_0|NZ_AP017630.1_2151813_2152698_-	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA	NA|121aa|down_0|NZ_AP017630.1_2152896_2153259_-	NA	NA|186aa|down_1|NZ_AP017630.1_2153372_2153930_-	PRK00529, PRK00529, elongation factor P; Validated	NA|116aa|down_2|NZ_AP017630.1_2154100_2154448_-	NA	NA|147aa|down_3|NZ_AP017630.1_2154444_2154885_-	cd03711, Tet_C, Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O)	NA|201aa|down_4|NZ_AP017630.1_2154853_2155456_-	NA	NA|117aa|down_5|NZ_AP017630.1_2155430_2155781_-	NA	NA|104aa|down_6|NZ_AP017630.1_2155827_2156139_-	NA	NA|170aa|down_7|NZ_AP017630.1_2156273_2156783_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_8|NZ_AP017630.1_2156801_2157230_-	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|340aa|down_9|NZ_AP017630.1_2157222_2158242_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_002355795.1_ASM235579v1	NZ_AP017630	Clostridium perfringens strain CBA7123	4	2593656-2593739	4	CRISPRCasFinder	no		csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	Orphan	ATTAGAATTTTATTTTATTAAATAC	25	0	0	NA	NA	NA	1	1	Orphan	csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	NA|228aa|up_3|NZ_AP017630.1_2589883_2590567_-,NA	NA|521aa|up_9|NZ_AP017630.1_2583011_2584574_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|79aa|up_8|NZ_AP017630.1_2584934_2585171_-	pfam06257, VEG, Biofilm formation stimulator VEG	NA|296aa|up_7|NZ_AP017630.1_2585333_2586221_-	pfam05582, Peptidase_U57, YabG peptidase U57	NA|335aa|up_6|NZ_AP017630.1_2586416_2587421_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|376aa|up_5|NZ_AP017630.1_2587529_2588657_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|343aa|up_4|NZ_AP017630.1_2588839_2589868_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|228aa|up_3|NZ_AP017630.1_2589883_2590567_-	NA	NA|336aa|up_2|NZ_AP017630.1_2590574_2591582_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|382aa|up_1|NZ_AP017630.1_2591710_2592856_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|177aa|up_0|NZ_AP017630.1_2593088_2593619_-	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I	NA|124aa|down_0|NZ_AP017630.1_2593810_2594182_-	pfam07009, NusG_II, NusG domain II	NA|148aa|down_1|NZ_AP017630.1_2594321_2594765_+	COG4939, COG4939, Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]	NA|343aa|down_2|NZ_AP017630.1_2594799_2595828_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|375aa|down_3|NZ_AP017630.1_2595953_2597078_-	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional	NA|110aa|down_4|NZ_AP017630.1_2597238_2597568_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|460aa|down_5|NZ_AP017630.1_2597809_2599189_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|340aa|down_6|NZ_AP017630.1_2599305_2600325_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|340aa|down_7|NZ_AP017630.1_2600339_2601359_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|211aa|down_8|NZ_AP017630.1_2601500_2602133_+	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|187aa|down_9|NZ_AP017630.1_2602141_2602702_+	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases
GCF_002355795.1_ASM235579v1	NZ_AP017631	Clostridium perfringens strain CBA7123 plasmid pCBA7123-01, complete sequence	1	37510-37604	1	CRISPRCasFinder	no			Orphan	AAAAAGTTACTTTTAAGTAACTT	23	0	0	NA	NA	NA	1	1	Orphan	csx1,c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	NA|266aa|up_8|NZ_AP017631.1_32209_33007_+,NA|214aa|up_7|NZ_AP017631.1_33017_33659_-,NA|157aa|up_5|NZ_AP017631.1_34208_34679_+,NA|76aa|up_3|NZ_AP017631.1_35561_35789_+,NA|166aa|up_2|NZ_AP017631.1_35854_36352_+,NA|84aa|up_1|NZ_AP017631.1_36380_36632_-,NA|271aa|down_0|NZ_AP017631.1_37988_38801_+,NA|86aa|down_7|NZ_AP017631.1_45144_45402_+,NA|101aa|down_9|NZ_AP017631.1_46051_46354_+	NA|245aa|up_9|NZ_AP017631.1_30847_31582_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|266aa|up_8|NZ_AP017631.1_32209_33007_+	NA	NA|214aa|up_7|NZ_AP017631.1_33017_33659_-	NA	NA|108aa|up_6|NZ_AP017631.1_33662_33986_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|157aa|up_5|NZ_AP017631.1_34208_34679_+	NA	NA|177aa|up_4|NZ_AP017631.1_34745_35276_+	TIGR00498, LexA_repressor	NA|76aa|up_3|NZ_AP017631.1_35561_35789_+	NA	NA|166aa|up_2|NZ_AP017631.1_35854_36352_+	NA	NA|84aa|up_1|NZ_AP017631.1_36380_36632_-	NA	NA|282aa|up_0|NZ_AP017631.1_36634_37480_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|271aa|down_0|NZ_AP017631.1_37988_38801_+	NA	NA|132aa|down_1|NZ_AP017631.1_39041_39437_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|69aa|down_2|NZ_AP017631.1_39595_39802_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|125aa|down_3|NZ_AP017631.1_39898_40273_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|367aa|down_4|NZ_AP017631.1_40334_41435_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|125aa|down_5|NZ_AP017631.1_41502_41877_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|971aa|down_6|NZ_AP017631.1_42016_44929_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|86aa|down_7|NZ_AP017631.1_45144_45402_+	NA	NA|208aa|down_8|NZ_AP017631.1_45411_46035_+	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases	NA|101aa|down_9|NZ_AP017631.1_46051_46354_+	NA
