The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	219701	232586	2391700		Staphylococcus_phage(88.89%)	12	NA	NA
WP_096076020.1|219701_221099_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	41.7	2.3e-93
WP_157742156.1|221079_222060_+	hypothetical protein	NA	A0A2H4PQM0	Staphylococcus_phage	32.9	1.8e-36
WP_096076022.1|222229_223279_+	acyltransferase	NA	NA	NA	NA	NA
WP_096076023.1|223310_223544_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	66.7	6.0e-23
WP_096076024.1|223550_224324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076025.1|224368_224839_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	43.9	4.3e-28
WP_096076026.1|224822_225572_+	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	50.0	7.0e-57
WP_096076027.1|225741_227331_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	71.0	8.9e-219
WP_096076028.1|227739_228930_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	77.7	5.4e-168
WP_096076029.1|229015_229204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076030.1|229449_230364_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	46.3	5.9e-58
WP_096078061.1|230453_232586_-	hypothetical protein	NA	S4VYY2	Pandoravirus	24.2	1.3e-07
>prophage 2
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	289403	296127	2391700		Staphylococcus_phage(71.43%)	7	NA	NA
WP_096076089.1|289403_290465_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	40.0	8.4e-64
WP_096076090.1|290445_291069_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.9	2.2e-40
WP_096076091.1|291068_292259_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	59.1	3.2e-128
WP_096076092.1|292255_292720_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	65.6	1.1e-41
WP_096076093.1|292843_293833_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	60.4	9.8e-107
WP_096076094.1|294295_295390_+	AAA family ATPase	NA	A0A2K9VDE3	Lactobacillus_phage	37.4	5.8e-68
WP_096076095.1|295401_296127_+	nicotinamide mononucleotide transporter	NA	U5J9C5	Bacillus_phage	35.4	7.8e-29
>prophage 3
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	770546	782168	2391700	transposase	Streptococcus_phage(63.64%)	12	NA	NA
WP_031942290.1|770546_771233_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.6e-127
WP_002405438.1|771993_772353_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	60.2	2.3e-26
WP_005228365.1|772866_773034_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	64.0	8.1e-14
WP_002405437.1|773121_775062_-	tetracycline resistance ribosomal protection protein Tet(S)	NA	A0A2K5B2A5	Erysipelothrix_phage	78.7	6.0e-294
WP_031942290.1|776171_776858_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.6e-127
WP_002294505.1|777028_777892_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
WP_000662263.1|777924_778659_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000233000.1|778639_779509_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.7	6.7e-152
WP_000205227.1|779523_779748_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002390960.1|779890_781435_-	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	88.7	1.8e-256
WP_000323438.1|781454_781871_-	recombinase	NA	A0A2K5B2B3	Erysipelothrix_phage	98.6	1.2e-71
WP_002360685.1|781871_782168_-	hypothetical protein	NA	A0A2K5B2B2	Erysipelothrix_phage	91.8	4.6e-44
>prophage 4
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	914148	951959	2391700	integrase,tRNA,terminase,protease,coat	Staphylococcus_phage(50.0%)	41	915066:915083	928831:928848
WP_096076680.1|914148_915048_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
915066:915083	attL	GTAAACTCTAGAATAGTT	NA	NA	NA	NA
WP_096076681.1|915331_916396_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_096076682.1|916614_917043_-	hypothetical protein	NA	A0A1W6JPD2	Staphylococcus_phage	34.6	5.0e-07
WP_096076683.1|917046_917607_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1W6JPJ2	Staphylococcus_phage	45.5	5.3e-33
WP_096076684.1|917603_917852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076685.1|917951_918293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076686.1|918289_918832_-|coat	spore coat protein	coat	A0A2H4JBD6	uncultured_Caudovirales_phage	38.2	3.4e-13
WP_096076687.1|919217_919499_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_096076688.1|919621_920896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076689.1|921208_921445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076690.1|921434_922058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076691.1|922057_922294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076692.1|922620_924360_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	43.9	2.1e-128
WP_096076693.1|924352_925186_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	30.5	1.9e-31
WP_096076694.1|925240_925576_-	DUF1474 family protein	NA	NA	NA	NA	NA
WP_096076695.1|925681_925960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157742187.1|925961_926135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076696.1|926146_926413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076697.1|926416_926590_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_096076698.1|926778_927441_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_096076699.1|927458_928682_+|integrase	site-specific integrase	integrase	U5U466	Staphylococcus_phage	37.7	5.9e-69
WP_096076700.1|928870_929215_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
928831:928848	attR	GTAAACTCTAGAATAGTT	NA	NA	NA	NA
WP_096076701.1|929602_930499_-	NERD domain-containing protein	NA	NA	NA	NA	NA
WP_096076702.1|930739_932932_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.9	1.9e-17
WP_096076703.1|932924_933257_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_096076704.1|933253_933541_-	YlxR family protein	NA	NA	NA	NA	NA
WP_096076705.1|933549_934614_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_096076706.1|934627_935095_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_096076707.1|935208_939510_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	43.8	4.1e-24
WP_096076708.1|939581_941288_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_096076709.1|941444_942722_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_096076710.1|942723_943860_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_096076711.1|943971_944763_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_096076712.1|944773_945547_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	43.7	9.2e-28
WP_096076713.1|945678_946236_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_096076714.1|946279_947002_-	UMP kinase	NA	NA	NA	NA	NA
WP_096076715.1|947206_948088_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_096076716.1|948221_948998_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_096076717.1|949193_949967_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_096076718.1|950031_951402_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.7	1.6e-27
WP_096076719.1|951416_951959_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 5
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	1201158	1260395	2391700	protease,tRNA,transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_157742193.1|1201158_1201686_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_096076957.1|1201693_1202563_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_096076958.1|1202627_1204145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096076959.1|1204195_1205539_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_096076960.1|1205571_1207113_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	27.9	2.3e-17
WP_096076961.1|1207178_1207952_-	TerC family protein	NA	S5MAL1	Bacillus_phage	41.8	8.3e-29
WP_096076962.1|1208030_1209593_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	28.6	1.7e-36
WP_096076963.1|1209604_1209844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076964.1|1209824_1211321_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_096076965.1|1211445_1212159_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.4	5.5e-27
WP_096076966.1|1212158_1213346_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_096076967.1|1213489_1214659_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_096076968.1|1214636_1215836_+	MFS transporter	NA	NA	NA	NA	NA
WP_096076969.1|1215873_1216749_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.4	1.0e-70
WP_096076970.1|1216893_1217991_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_157742194.1|1218083_1218806_+	esterase family protein	NA	NA	NA	NA	NA
WP_096076972.1|1218849_1219359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096076973.1|1219387_1220161_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_096076974.1|1220308_1222147_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_096076975.1|1222156_1223533_-	magnesium transporter	NA	NA	NA	NA	NA
WP_096078098.1|1223558_1224416_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_096076976.1|1224415_1225213_-	NAD kinase	NA	NA	NA	NA	NA
WP_096076977.1|1225225_1225855_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_096076978.1|1225869_1226214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076979.1|1226361_1226949_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_096076980.1|1226996_1227362_+	globin	NA	NA	NA	NA	NA
WP_096076981.1|1227381_1228164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096076982.1|1228496_1230305_-	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_096076983.1|1230341_1231334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076984.1|1231410_1232079_-	adaptor protein MecA	NA	NA	NA	NA	NA
WP_096076985.1|1232222_1232618_-	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_096076986.1|1233094_1234087_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_096076987.1|1234136_1235804_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_096078099.1|1236143_1237109_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_096076988.1|1237363_1238437_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.9e-18
WP_096076989.1|1238451_1239510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_096076990.1|1239509_1240436_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_096076991.1|1240591_1242229_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_157742195.1|1242547_1242910_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_096076993.1|1243008_1243911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096076994.1|1243992_1245228_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_096076995.1|1245227_1246181_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_096076996.1|1246260_1247268_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_096076997.1|1247356_1247551_+	YjzD family protein	NA	NA	NA	NA	NA
WP_096076998.1|1247578_1250161_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	37.2	1.1e-120
WP_096076999.1|1250335_1251031_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_096077000.1|1251061_1251370_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_096077001.1|1251466_1252276_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_096077002.1|1252287_1253607_+	CoA-disulfide reductase	NA	NA	NA	NA	NA
WP_157742196.1|1253649_1254174_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	46.8	1.2e-34
WP_096077004.1|1254151_1254460_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_096076783.1|1254525_1255053_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_096077005.1|1255239_1255584_+	PTS transporter subunit EIIB	NA	NA	NA	NA	NA
WP_096077006.1|1255999_1256551_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.4	2.3e-36
WP_096078100.1|1256803_1258738_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.6	2.3e-88
WP_048728532.1|1259097_1259412_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_157742196.1|1259584_1260109_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	46.8	1.2e-34
WP_096077004.1|1260086_1260395_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	1375022	1383046	2391700		uncultured_Caudovirales_phage(50.0%)	6	NA	NA
WP_096077119.1|1375022_1375991_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	83.9	5.3e-158
WP_096077120.1|1376093_1378199_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	83.0	0.0e+00
WP_096077121.1|1378161_1378557_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	54.5	2.4e-32
WP_096077122.1|1379022_1379520_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	64.9	6.5e-51
WP_096077123.1|1379791_1381303_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.5	8.3e-73
WP_096077124.1|1381540_1383046_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.6	4.2e-77
>prophage 7
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	2391700	2077343	2085995	2391700	integrase	Staphylococcus_phage(50.0%)	13	2078136:2078157	2088880:2088901
WP_096077770.1|2077343_2077874_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	63.6	1.4e-54
WP_096077771.1|2077907_2078150_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
2078136:2078157	attL	AAAGATGAACAATAAGATATAA	NA	NA	NA	NA
WP_096077772.1|2078258_2079089_-	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	67.1	2.6e-105
WP_096077773.1|2079105_2079489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096077774.1|2079490_2080714_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	54.1	1.8e-118
WP_157742245.1|2080717_2081524_-	helix-turn-helix domain-containing protein	NA	A0A2H4JH10	uncultured_Caudovirales_phage	28.9	8.2e-11
WP_096077776.1|2081717_2081960_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB7	Staphylococcus_phage	49.3	4.2e-11
WP_096077777.1|2081959_2082598_+	phage repressor protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	44.5	6.6e-40
WP_096077778.1|2082771_2083047_+	pathogenicity island protein	NA	NA	NA	NA	NA
WP_096077779.1|2083060_2083408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157742246.1|2083435_2083663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157742247.1|2083801_2084665_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	24.6	1.3e-19
WP_096077782.1|2084639_2085995_+	hypothetical protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	35.9	6.1e-67
2088880:2088901	attR	AAAGATGAACAATAAGATATAA	NA	NA	NA	NA
