The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	0	70036	4101245	tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	77634	136108	4101245	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	164894	225405	4101245	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169128_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174136_174316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	233337	286925	4101245	protease,tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236258_236432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	390858	448367	4101245	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_010929765.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157747913.1|391795_391963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400019_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401028_401172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403585_404827_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411331_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417526_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	590420	651608	4101245	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_010931070.1|590420_591371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931489.1|608616_610467_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610470_611304_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611303_612245_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612496_613492_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613609_615898_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616204_617113_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617167_618133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618207_619869_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619865_620651_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620799_621750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622448_622832_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622889_623492_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623509_623911_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624044_624938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624934_625516_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626310_627045_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627085_628135_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628282_628861_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629247_630225_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630318_634713_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634913_635762_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635920_636733_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636788_637739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637725_637890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637837_638638_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638699_639083_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639094_640528_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640734_641064_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641066_641735_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641998_642919_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642965_643178_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643200_643623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643639_644740_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644836_646354_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646429_647269_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647290_648172_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648253_649348_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649641_650592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650666_651608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	656926	703123	4101245	terminase,tRNA,transposase,tail	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|656926_657958_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657998_658238_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658307_659897_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659896_660445_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660525_661098_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661116_662028_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662101_663070_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663192_664266_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664270_666091_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666167_667118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667206_667542_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667675_668326_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668347_669766_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669835_670591_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670559_671318_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671328_672210_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672226_672934_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672936_673695_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673904_675647_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675639_676164_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676203_676998_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677165_678239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678337_679288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679539_679752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679817_680429_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680908_681229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681221_681920_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681934_682156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682173_683124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683799_684249_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684235_685513_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685515_686934_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686962_688018_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688023_688266_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688388_688991_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689419_690370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690387_691035_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691044_691296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691358_691841_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691842_692043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692042_692438_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692434_692833_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692829_693252_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693259_693760_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694014_694533_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694542_694872_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694889_695180_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695205_697818_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697827_698187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698254_698788_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698784_699174_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699166_703123_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	709289	763219	4101245	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|709289_711020_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711072_711501_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711503_712184_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712183_712642_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712678_713653_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713669_714986_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715017_715515_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715601_716291_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716290_717340_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717336_718131_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718299_718650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718625_719183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|720107_720326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853352.1|720312_721263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|723541_724630_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724632_726075_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726179_727325_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727356_728154_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728178_729738_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729734_732107_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732216_733320_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733319_734012_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734155_734857_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734841_735219_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735950_736901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|736887_737031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|737060_737933_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738273_738492_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738531_739911_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739952_741350_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741389_743042_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743045_743930_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743929_744871_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744949_746569_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746735_747551_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747618_748188_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748188_749139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749793_750891_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750924_752190_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752347_753298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753541_754132_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754147_756592_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756711_757683_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757814_758339_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758298_759249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759470_761666_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761738_762146_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762093_762282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762268_763219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	885808	953784	4101245	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885808_886825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887021_888005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889603_890992_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891022_892012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892122_893355_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893636_894437_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894459_896691_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897478_897925_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897946_898693_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898836_899814_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900447_901059_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901052_902270_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902410_903361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903357_904077_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904197_906357_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906447_906717_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906805_907012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907010_907538_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907556_908336_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908503_909520_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909592_910084_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910094_911810_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912973_913924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913920_915771_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916151_916811_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916898_917051_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917159_917327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917338_918019_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918300_919017_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919031_920333_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922477_925366_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925589_926942_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926970_927492_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927488_928943_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928977_929226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929331_930207_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930232_931288_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931300_932092_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932124_933495_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934547_934685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|934671_935622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935674_935896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936055_936268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936387_937506_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937602_937818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938011_938263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938375_939326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939322_939706_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930067.1|939760_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941724_942552_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942597_943578_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943574_943787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943783_944965_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945128_945863_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945864_948477_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948612_950526_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951141_951552_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951649_952735_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952833_953784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	976962	1046276	4101245	transposase	Streptococcus_phage(14.29%)	54	NA	NA
WP_005012067.1|976962_977913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977993_978905_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978965_980111_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980130_981045_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981116_981866_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981865_982795_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983038_984865_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984947_985589_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985778_986813_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988649_989714_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990511_991420_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992907_994182_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994335_994716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994723_995596_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995901_996282_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996492_997218_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997313_998264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998368_999418_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999555_1000572_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002080_1002653_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002712_1003444_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003495_1004413_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005220_1008400_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248379.1|1010093_1012208_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012283_1013135_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013131_1013758_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013754_1015509_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_077085657.1|1015801_1018507_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_077085658.1|1018519_1020181_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020193_1021984_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022205_1023381_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023423_1024374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024472_1025213_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025407_1027444_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027461_1028472_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028589_1029783_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029812_1030586_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030582_1031773_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031798_1032737_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032733_1035082_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1035236_1035944_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035981_1037115_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037207_1037360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037391_1037940_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037958_1038444_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038621_1039560_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039562_1039880_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039925_1040870_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042550_1043201_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043254_1043590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043586_1044447_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044463_1044745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044818_1045082_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045325_1046276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1058494	1115876	4101245	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1058494_1059511_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060341_1061349_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061345_1062989_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1062985_1063888_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064013_1064487_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064476_1065499_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065495_1066923_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067860_1068877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069209_1070145_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070194_1072075_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072141_1072486_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072630_1073767_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073763_1074837_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074994_1076431_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076521_1077163_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1077498_1078515_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1078847_1081595_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1081661_1083083_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1083346_1084063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1084147_1084465_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1084505_1084919_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1084920_1085280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1085322_1086867_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1086950_1087781_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1087815_1088970_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089012_1089885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090001_1092290_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1093496_1093961_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1093987_1094938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1095305_1096082_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1096126_1096984_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097005_1098022_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1098156_1099197_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1099391_1101473_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1101708_1103202_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1103432_1104227_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1104447_1105806_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1105802_1106645_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1106663_1108550_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1108787_1109420_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1109438_1110041_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1110044_1110206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1110192_1111143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1111945_1112746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1112789_1113776_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1113915_1114929_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1114925_1115876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1151227	1216811	4101245	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1151227_1153024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153023_1153992_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1154061_1154907_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1154974_1155529_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1155575_1156526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1156624_1157257_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1157421_1159704_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1159858_1162555_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1162680_1163169_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1165579_1168450_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1168495_1169710_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1169939_1171367_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1171407_1172556_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1172568_1173327_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1173414_1174317_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1174313_1175264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1175393_1176377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1176431_1177154_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1178632_1179988_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1180068_1182444_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1182608_1184684_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1184745_1185546_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1185647_1186610_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1186597_1187353_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1187460_1189098_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1189165_1189903_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190005_1190581_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1190753_1191290_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1191292_1191637_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1191652_1192498_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1192536_1193916_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1193993_1194875_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1194973_1195924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1195920_1196331_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1196438_1197293_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1197285_1198248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1198293_1199418_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1199529_1200402_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1200526_1201306_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1201459_1202881_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1203315_1205013_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1205041_1205164_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1205239_1206181_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1206507_1207254_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1207261_1208188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1208309_1209227_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1209266_1210220_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1210244_1210823_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1212496_1213105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1213182_1213536_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1213619_1214609_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1214811_1215762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1215860_1216811_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1379376	1445876	4101245	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1379376_1380327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1380392_1380572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1380688_1381411_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1381430_1382576_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010929588.1|1383483_1384434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1384621_1385824_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1385820_1386579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1386972_1387605_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1388560_1391161_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1391148_1394568_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1394575_1395481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1395619_1396198_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1396194_1397106_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1397119_1397800_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1398001_1400041_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1400059_1401046_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1401071_1401869_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1401865_1403059_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1403055_1404018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1404035_1405076_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1405063_1405672_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1407260_1408256_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1408275_1409454_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1409464_1410382_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1410437_1411388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1411486_1412257_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1412253_1412934_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1413000_1413789_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1414035_1415052_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1415357_1416512_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1421017_1421500_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1421517_1421808_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1421934_1422645_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1422828_1423236_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1423248_1423668_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1423715_1424420_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1424485_1425907_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1425945_1426710_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1426753_1427539_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1427538_1428228_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1428230_1429364_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1429381_1430404_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1430473_1432120_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1432153_1433686_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1433764_1435585_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1435705_1437325_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1437503_1438946_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1439162_1440179_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1440225_1441014_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1441036_1441306_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1441322_1442114_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1442125_1442467_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1442477_1442978_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1442970_1443981_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1443983_1444556_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1444925_1445876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1474047	1512637	4101245	protease,transposase	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1474047_1475382_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1475434_1477771_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1477896_1478460_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1478468_1479560_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1479631_1480087_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1480087_1480882_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1480878_1482060_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1482046_1482652_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1482648_1483422_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1483433_1484261_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1484422_1486786_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1486853_1487573_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1487696_1488122_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1488156_1489107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1489224_1490151_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1490216_1491374_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1491354_1491822_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1491969_1492920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1492936_1493371_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1493360_1493711_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1493907_1495062_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1495058_1496231_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1496278_1497172_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1497217_1497655_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1497714_1498404_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1498413_1499364_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1499462_1500413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1500511_1501495_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1501757_1502855_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1502865_1506108_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1507129_1507774_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1507784_1508684_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1508731_1509817_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1509813_1511508_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1511541_1511700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1511686_1512637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1792983	1840998	4101245	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1792983_1793934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1794032_1796633_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1796739_1797744_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1797852_1799193_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1799233_1800262_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1800457_1801003_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1800999_1801560_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1801658_1802609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1802646_1803234_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1803251_1803635_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1804994_1806287_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1806421_1807462_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1807559_1808576_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1808843_1809491_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1809616_1810375_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1810449_1811139_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1811156_1812041_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1812037_1812817_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1812843_1813521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1813809_1814562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1814680_1816081_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1816104_1816503_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1816678_1816879_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1817017_1817746_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1817879_1819295_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1819298_1820162_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1820174_1820924_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1821106_1823122_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1823103_1823652_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1823728_1824448_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1824546_1825497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1825595_1826546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1826694_1827033_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1827090_1827252_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1827283_1827484_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1827749_1830323_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1830393_1832967_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1835493_1835982_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1836073_1837225_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1837278_1838100_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1838138_1839368_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1839496_1839937_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1839881_1840061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1840047_1840998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1902560	1961830	4101245	protease,tRNA,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1902560_1903511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1903635_1904445_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1904500_1904659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1904645_1905596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1906869_1908087_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1909143_1910046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1910122_1910995_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1911125_1911494_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1911551_1912598_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1912793_1914050_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1914054_1915392_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1915541_1916498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1916600_1917533_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1917648_1917969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1917970_1918321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1918368_1919943_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1919995_1920940_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1920957_1921788_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1921780_1923415_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1923411_1924767_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1925673_1927251_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1927254_1928529_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1928626_1929001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1930716_1931850_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1931887_1932493_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1932489_1933308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1933379_1936004_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1935990_1936245_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1936311_1936893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1937196_1937457_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1937622_1938246_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1938245_1939019_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1939015_1940224_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1940249_1940723_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1940796_1941747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1941845_1942796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1942894_1944244_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1945009_1945765_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1945857_1948740_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1949062_1949488_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1949515_1950664_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1950660_1951167_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1951173_1952469_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1952509_1953814_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1953815_1954454_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1954456_1955617_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1955643_1956999_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1957002_1958073_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1958211_1958448_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1958535_1959642_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1959607_1960912_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1960930_1961830_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	1972070	2016393	4101245	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|1972070_1973021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1973119_1974070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1974056_1974257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1974269_1975355_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1975370_1976132_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1976128_1977052_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1977150_1977675_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1977683_1978427_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1978522_1978762_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1978775_1978928_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1979013_1980504_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1980595_1981534_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1981530_1981707_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1981709_1982372_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1983993_1984137_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1984133_1985108_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1985144_1985288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1985274_1986225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1986221_1987496_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1987593_1988793_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1988789_1989443_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1989439_1990876_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1990863_1991223_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1992195_1993146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1994191_1996057_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1996314_1997835_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1997922_1998573_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1999521_2000817_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2000838_2001723_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2001821_2002697_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2002686_2003043_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2003116_2004148_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2004277_2004457_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2004554_2005079_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2005089_2005926_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006038_2006410_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2006406_2006958_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2006973_2008665_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2008713_2009394_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2009641_2010106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2010275_2011205_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2011217_2011865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2011938_2013756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2013839_2014790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2015294_2015456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2015442_2016393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2046166	2110535	4101245	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2046166_2047117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2047103_2047295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2047338_2048289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2048387_2049353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2049490_2050390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2052984_2054472_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2054482_2055679_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2055751_2057071_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2057067_2057943_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2057973_2059143_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2059139_2059454_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2059475_2060198_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2060197_2061016_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061020_2061548_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2061553_2062819_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2063168_2064308_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2064385_2065258_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2066128_2067079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067038_2067674_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068033_2069356_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2069584_2070496_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2071920_2072493_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2072532_2074362_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2074324_2075383_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2075420_2075882_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2075966_2076713_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2078203_2081434_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2081500_2082832_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2083084_2083459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2083561_2084740_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2084750_2085341_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2085451_2086258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2086283_2087078_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2088078_2089053_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2089211_2089724_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2089880_2090852_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2092596_2093403_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2093399_2094536_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2094651_2095416_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2095529_2096300_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2096384_2097596_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2097644_2098019_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2098119_2099382_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2099378_2100236_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2100408_2101410_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2101861_2102812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2104327_2105527_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2105895_2106132_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2106195_2106363_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2106476_2108372_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2108535_2109486_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2109584_2110535_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2297003	2358351	4101245	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297003_2297954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2298070_2298790_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2298962_2299949_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2299949_2300432_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2300435_2301719_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2301715_2302654_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2302650_2304360_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2304369_2305617_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2307227_2308517_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2309654_2310428_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2311089_2311833_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2311907_2312648_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2312843_2313680_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2313730_2314501_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2314550_2315603_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2315599_2316226_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2316222_2317269_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2317435_2318452_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2318550_2319501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2322241_2323531_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2323649_2324120_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2324130_2325339_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2325485_2325950_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2325973_2326924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2327908_2328682_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2328678_2329677_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2329761_2330538_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2330693_2332361_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2332678_2333803_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2333929_2334553_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2334549_2336451_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2336499_2337294_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2337306_2338308_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2338304_2338811_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2338803_2339652_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2339749_2340292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2340335_2341286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2341441_2341768_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2341764_2342049_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2342045_2342525_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2342521_2344150_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2344146_2344491_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2344490_2347424_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2348582_2349533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2349631_2349928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350034_2350952_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2350956_2351670_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2351683_2352655_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2354374_2354755_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2354758_2355946_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2356384_2357107_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2357400_2358351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2379142	2450296	4101245	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2379142_2380093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2380645_2382271_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2382320_2383355_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2383357_2384704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2384700_2386215_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2386205_2387216_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2387689_2388631_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2388639_2389608_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2391147_2392116_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2392293_2393283_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2393329_2394088_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2394277_2395015_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2394965_2395127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2395113_2396064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2396248_2397031_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397024_2397726_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2397965_2398568_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2399752_2399908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2399894_2400845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2400841_2402398_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2402390_2403164_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2403222_2404173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2404254_2405430_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2405443_2407501_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2407497_2408523_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2408534_2409824_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2409846_2410944_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2410940_2411831_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2411827_2413912_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2413943_2415113_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2415154_2415895_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2415894_2416665_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2417520_2418306_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2418332_2420417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2420584_2422540_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2422863_2423364_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2423462_2424989_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2425126_2426014_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426028_2426982_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2427033_2429124_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2429139_2429526_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2432219_2433023_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2434316_2435219_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2435283_2436060_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2436381_2437431_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2437554_2439225_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2439229_2440024_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2440122_2441073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2441092_2441998_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2442075_2442774_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2442933_2443878_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2443887_2445378_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2445374_2446442_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2446505_2447918_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2448103_2449324_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2449345_2450296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2534496	2596797	4101245	tRNA,transposase	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2534496_2535447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2535545_2536316_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2536312_2536984_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2536980_2537622_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2537634_2538555_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2538715_2539876_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2539917_2540868_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2541466_2541691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2541855_2543550_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2543671_2543941_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2544056_2544455_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2544465_2545422_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2545558_2546104_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2546124_2548074_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2548461_2549238_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2549243_2549636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2550057_2551008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551004_2552102_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2552133_2553084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2554865_2556107_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2556118_2556892_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2556918_2557869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2557967_2558750_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2558838_2560065_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2560790_2562176_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2562194_2562800_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2562796_2564653_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2564649_2565450_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2565464_2566658_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2566725_2567700_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2567822_2569046_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2569156_2571361_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2571655_2572315_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2572322_2572529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2572867_2573623_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2573638_2573800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2573893_2574409_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2574681_2574999_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2575186_2575435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2575713_2577069_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2577115_2578495_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2578557_2579190_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2579189_2581550_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2581591_2582551_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2582537_2583224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2583220_2583553_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2583668_2584619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2584615_2586682_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2586681_2586954_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2587648_2587738_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2587737_2589522_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2589545_2591711_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2591721_2592321_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2595142_2595838_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2595846_2596797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2682914	2723583	4101245	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2682914_2683865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2683975_2684158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2684257_2684854_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685037_2686129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2686628_2687039_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2687097_2687439_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2687444_2689862_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2689874_2690897_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2690971_2691331_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2691346_2691544_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2691879_2692830_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2692816_2692978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2693024_2693474_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2693470_2694421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2694407_2694548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2694531_2695980_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2696094_2696376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2696328_2696493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2696479_2697430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2697674_2698388_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2698510_2698738_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699032_2699671_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2699743_2700814_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2700810_2701761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2702176_2702701_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2702704_2702974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2703172_2704234_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2704317_2705952_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2705953_2706757_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2706785_2707745_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2707748_2709263_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2709299_2710304_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2710735_2711206_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2711241_2711853_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2711883_2712507_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2712587_2714120_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2714154_2715396_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2715439_2716471_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2716467_2717637_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2717630_2718311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2718472_2719315_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2719477_2720449_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2720620_2721499_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2721521_2722592_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2722632_2723583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2779048	2851918	4101245	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2779048_2779465_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2779575_2780208_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2780236_2780680_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2780701_2781793_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2781847_2782648_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2782783_2783404_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2783543_2784017_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2785156_2786107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2786103_2793765_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794005_2798052_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2798364_2798946_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2798942_2800241_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2800320_2801349_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2801272_2801623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2801609_2802560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2802556_2803507_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2803823_2804429_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2804482_2805796_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2805870_2806341_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2806340_2807129_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2807139_2808792_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2808879_2809830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2810991_2811498_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2811494_2812259_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2812274_2812559_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2812623_2813613_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2813784_2814714_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2814685_2815372_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2815405_2815951_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2815995_2817261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2817257_2818160_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2819341_2820286_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2820380_2821898_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2821939_2823568_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2823675_2824557_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2827669_2828044_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2828068_2828407_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2828450_2830085_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2830123_2831470_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2831577_2832999_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2833068_2833653_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2833755_2834706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2834840_2835947_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2835957_2837055_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2837199_2838405_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2838411_2838933_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2838929_2839421_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2839417_2839669_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2839649_2840135_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2840270_2843732_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2843728_2844634_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2844643_2845075_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2845321_2845825_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2845836_2847303_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2847377_2848253_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2848249_2849257_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2849724_2850030_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2850120_2850711_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2850901_2851918_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2855061	2921872	4101245	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2855061_2856012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2856110_2857061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2857057_2857852_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2857883_2858588_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2858662_2859463_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2859459_2859867_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2859863_2860505_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2860497_2862519_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2863758_2865090_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2865086_2866037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2867743_2868010_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2868717_2869056_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2873609_2874212_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2874308_2875598_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2875655_2876387_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2876383_2877187_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2877183_2878272_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2878268_2879198_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2879346_2880492_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2880513_2881464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2881794_2885616_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2885772_2886441_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2886445_2888119_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2888137_2889457_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2889461_2891813_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2891832_2894001_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2893997_2899187_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2899276_2899591_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2899818_2900064_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2900158_2900677_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2900776_2901982_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2902097_2903495_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2903611_2904190_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2904262_2905654_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2905821_2906772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2907052_2907673_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2907669_2908083_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2908079_2909123_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2909178_2909367_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2909376_2910141_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2910231_2910888_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2910979_2911738_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2911763_2913365_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2913565_2914570_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2914670_2914934_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2915051_2915828_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2916418_2917369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2919752_2920865_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2920921_2921872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	2952258	2991447	4101245	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2952258_2953209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2953195_2953441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2953329_2954226_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2956503_2958729_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2958893_2959982_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2959938_2960592_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2960639_2961437_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2961968_2962919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2962999_2964148_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2964204_2965155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2965141_2965360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2965253_2965559_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2965587_2966022_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966023_2967268_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2967264_2967975_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2967989_2968901_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2969263_2969668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2969664_2970123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2970129_2971038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971034_2971901_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2971887_2972715_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2972725_2973853_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2974930_2976169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2976210_2977473_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2977479_2978232_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2978283_2978469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2978744_2979209_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2979240_2979900_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980044_2982153_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2982149_2983100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2983203_2983824_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2983927_2984668_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2985802_2986927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2986972_2987341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2987582_2988533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2989568_2990111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2990303_2990510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990496_2991447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	3376943	3430684	4101245	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3376943_3377894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378298_3378943_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378967_3379552_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379652_3380270_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380272_3381988_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381984_3382293_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3382309_3382945_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382971_3383274_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383374_3384229_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384416_3384641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384810_3385083_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385500_3385908_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386277_3387072_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387172_3388408_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388476_3389493_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3389489_3390881_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390877_3392074_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3392070_3393609_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393605_3394865_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396805_3397756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3397742_3397919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3398522_3399617_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399609_3400944_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400897_3401581_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401606_3402770_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3402766_3403768_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403767_3404640_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404636_3405386_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405382_3406174_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406170_3407310_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3407618_3408371_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408404_3409187_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409190_3409580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3410719_3411583_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3411618_3412707_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412703_3413654_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3413640_3414054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3414007_3416986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417912_3418791_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420739_3421690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421686_3422154_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422196_3422967_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3422987_3423788_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423798_3425208_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425302_3426088_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426327_3427344_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427451_3427844_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427981_3428662_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3428666_3429665_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429733_3430684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	3436839	3496139	4101245	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3436839_3438603_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438714_3439593_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439705_3440521_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440524_3440776_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3440860_3441877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3442207_3442429_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444789_3445707_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3446204_3447413_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3447492_3449064_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3449181_3450117_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3450305_3451250_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3451318_3451534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3451817_3457535_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457540_3458668_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458723_3459350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3459621_3460638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460733_3461444_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461440_3462430_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3462561_3464157_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464159_3464897_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3465052_3465925_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3466193_3467414_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467410_3468070_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3468141_3468774_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468803_3469322_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469332_3470442_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470488_3471343_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471344_3472247_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473469_3474420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3476176_3477166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3477341_3478130_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3478126_3479158_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3479176_3479740_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479795_3481316_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481579_3482284_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3482291_3483029_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3483134_3483509_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483551_3484841_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484837_3486007_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486003_3486843_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486902_3487838_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487850_3488801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488899_3489862_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489893_3490253_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490377_3491280_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491281_3493054_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3493088_3493865_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3495188_3496139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	3511077	3569150	4101245	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3511077_3512028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3512156_3513290_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3513333_3514239_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3514241_3515942_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515938_3516859_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516866_3517844_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517902_3518937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3520911_3521148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3521274_3522138_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3522226_3523048_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3523127_3523865_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3523861_3524854_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524967_3525630_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525674_3526823_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3529146_3530097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3530437_3531388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3531486_3532437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532733_3533231_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3533273_3535049_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3535095_3535923_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535929_3536664_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537833_3538628_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538917_3539508_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539541_3540870_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540944_3542090_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3542201_3543200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3543162_3543597_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3545113_3545998_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545994_3547200_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3547196_3548057_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3548169_3549960_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3550000_3550666_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550666_3550975_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3551140_3552427_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3553860_3554811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556762_3557977_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3558082_3559072_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3559068_3559677_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559689_3560319_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3560315_3560936_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560967_3561759_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3562601_3563066_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3563084_3564011_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3564064_3565351_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3566281_3567154_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3567150_3568101_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3568199_3569150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP016965	Bordetella pertussis strain F013, complete genome	4101245	4000313	4065225	4101245	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4000313_4000799_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4000887_4001025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4001017_4001998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4002264_4003074_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4003113_4003794_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4003787_4004246_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4004257_4004620_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4004702_4005386_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4005441_4005750_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4005768_4006083_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4006079_4008554_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4008561_4009953_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4009949_4010135_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4010113_4010815_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4010811_4011633_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4011613_4012738_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4012730_4013750_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4013955_4014990_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4015090_4015882_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4015964_4016339_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4016316_4017726_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4017718_4019101_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4019435_4021040_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4021075_4022089_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4022099_4023026_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4023416_4024367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024536_4025763_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025962_4026829_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026821_4027784_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027884_4028835_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028933_4029884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029982_4030933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030929_4032423_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032419_4035527_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035523_4038592_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038588_4039839_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4040019_4040781_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040813_4041464_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041466_4042306_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042546_4043290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4043372_4043720_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043817_4044660_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044704_4045592_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045618_4045807_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045904_4047362_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047348_4048875_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048893_4049361_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4049360_4050383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4050503_4051244_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4051298_4052399_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052400_4053591_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053710_4054727_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4055045_4055717_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055713_4056622_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056833_4057481_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061332_4062409_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062419_4063229_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063318_4064092_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4064111_4064288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4064274_4065225_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
