assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	1	1006226-1007047	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	13,13,11	13	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|47aa|up_1|NZ_CP023377.1_1004935_1005076_-,NA	NA|434aa|up_9|NZ_CP023377.1_994856_996158_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP023377.1_996205_998440_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP023377.1_998517_998766_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP023377.1_998765_999101_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP023377.1_999171_999963_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP023377.1_1000190_1001828_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP023377.1_1001915_1003214_+	PRK00077, eno, enolase; Provisional	NA|259aa|up_2|NZ_CP023377.1_1004145_1004922_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP023377.1_1004935_1005076_-	NA	NA|224aa|up_0|NZ_CP023377.1_1005214_1005886_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP023377.1_1007685_1009164_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP023377.1_1009190_1010468_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP023377.1_1010785_1011571_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP023377.1_1011640_1013095_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP023377.1_1013188_1014526_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP023377.1_1014503_1015283_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP023377.1_1015279_1016140_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP023377.1_1016287_1016863_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP023377.1_1016879_1017140_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP023377.1_1017130_1018402_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	2	1034097-1034613	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,8	8	TypeI-E	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|51aa|up_9|NZ_CP023377.1_1023745_1023898_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP023377.1_1024090_1025203_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP023377.1_1025441_1028141_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP023377.1_1028238_1029801_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP023377.1_1029797_1030334_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP023377.1_1030345_1031401_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP023377.1_1031411_1032158_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP023377.1_1032139_1032790_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP023377.1_1032786_1033710_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP023377.1_1033706_1034000_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP023377.1_1034633_1035671_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP023377.1_1035922_1036831_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP023377.1_1036832_1038260_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP023377.1_1038259_1038865_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP023377.1_1038914_1039238_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP023377.1_1039431_1039743_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP023377.1_1039761_1040472_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP023377.1_1040471_1040951_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP023377.1_1040947_1041997_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP023377.1_1041977_1042739_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	3	1263179-1263300	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	GCGTCTTATCAGGCCTACAATGTACAGAACC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|271aa|up_9|NZ_CP023377.1_1253696_1254509_-	cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs	NA|107aa|up_8|NZ_CP023377.1_1254505_1254826_-	PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional	NA|173aa|up_7|NZ_CP023377.1_1254825_1255344_-	PRK10069, PRK10069, 3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA|454aa|up_6|NZ_CP023377.1_1255340_1256702_-	cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases	NA|297aa|up_5|NZ_CP023377.1_1256837_1257728_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|380aa|up_4|NZ_CP023377.1_1257887_1259027_+	PRK11128, PRK11128, 3-phenylpropionate MFS transporter	NA|427aa|up_3|NZ_CP023377.1_1259018_1260299_-	PRK11564, PRK11564, stationary phase inducible protein CsiE; Provisional	NA|285aa|up_2|NZ_CP023377.1_1260489_1261344_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|268aa|up_1|NZ_CP023377.1_1261488_1262292_-	PRK10757, PRK10757, inositol-1-monophosphatase	NA|247aa|up_0|NZ_CP023377.1_1262410_1263151_+	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	NA|163aa|down_0|NZ_CP023377.1_1263511_1264000_+	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR	NA|405aa|down_1|NZ_CP023377.1_1264240_1265455_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|129aa|down_2|NZ_CP023377.1_1265482_1265869_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|down_3|NZ_CP023377.1_1265885_1266209_+	PRK09502, iscA, iron-sulfur cluster assembly protein IscA	NA|172aa|down_4|NZ_CP023377.1_1266304_1266820_+	PRK05014, hscB, co-chaperone HscB; Provisional	NA|617aa|down_5|NZ_CP023377.1_1266836_1268687_+	PRK05183, hscA, chaperone protein HscA; Provisional	NA|112aa|down_6|NZ_CP023377.1_1268688_1269024_+	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|67aa|down_7|NZ_CP023377.1_1269035_1269236_+	PRK10721, PRK10721, hypothetical protein; Provisional	NA|428aa|down_8|NZ_CP023377.1_1269293_1270577_+	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|259aa|down_9|NZ_CP023377.1_1270718_1271495_+	PRK11611, PRK11611, enhanced serine sensitivity protein SseB; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	4	1574149-1574266	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|268aa|up_9|NZ_CP023377.1_1562785_1563589_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP023377.1_1563629_1564532_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP023377.1_1564724_1565915_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP023377.1_1565911_1567171_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP023377.1_1567160_1568789_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP023377.1_1569061_1570420_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP023377.1_1570424_1571501_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP023377.1_1571963_1572614_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP023377.1_1572667_1572922_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP023377.1_1572921_1574052_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP023377.1_1574285_1576571_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP023377.1_1577266_1581019_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP023377.1_1581146_1581869_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP023377.1_1582015_1584643_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP023377.1_1584791_1586480_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP023377.1_1586476_1587100_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP023377.1_1587243_1591638_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP023377.1_1591638_1593288_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP023377.1_1593292_1594069_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP023377.1_1594142_1595327_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	5	2951678-2951769	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|70aa|up_8|NZ_CP023377.1_2940752_2940962_-,NA	NA|503aa|up_9|NZ_CP023377.1_2939085_2940594_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP023377.1_2940752_2940962_-	NA	NA|1321aa|up_7|NZ_CP023377.1_2941016_2944979_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP023377.1_2945018_2945657_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|231aa|up_5|NZ_CP023377.1_2947036_2947729_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP023377.1_2947740_2948127_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP023377.1_2948134_2948935_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP023377.1_2948944_2949535_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP023377.1_2949545_2950040_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP023377.1_2950060_2951389_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP023377.1_2952192_2952789_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP023377.1_2952809_2953037_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP023377.1_2953256_2954498_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP023377.1_2956308_2957229_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP023377.1_2957228_2957534_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP023377.1_2957685_2958285_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP023377.1_2958281_2960828_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP023377.1_2960827_2962000_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP023377.1_2962129_2962822_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP023377.1_2962794_2963823_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	6	3094237-3094503	6,3	CRISPRCasFinder,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAACG,TTTCTAAGCTGCCTGTACGGCAGTGAAC	29,28	0	0	NA	NA	I-F:I-F	4,3	4	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|431aa|up_9|NZ_CP023377.1_3079360_3080653_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP023377.1_3080743_3082087_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP023377.1_3082097_3082709_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP023377.1_3082863_3086853_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP023377.1_3086987_3087482_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP023377.1_3088026_3088992_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP023377.1_3089114_3090881_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP023377.1_3090881_3092603_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP023377.1_3092644_3093349_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP023377.1_3093633_3093852_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP023377.1_3094711_3096988_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP023377.1_3097018_3097339_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP023377.1_3097661_3097886_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP023377.1_3097958_3099905_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP023377.1_3099901_3101017_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP023377.1_3101167_3102124_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP023377.1_3102120_3103779_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_7|NZ_CP023377.1_3105393_3106293_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_CP023377.1_3106436_3108089_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_CP023377.1_3108100_3109069_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	7	3215208-3215352	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA|155aa|down_1|NZ_CP023377.1_3218624_3219089_+	NA|330aa|up_9|NZ_CP023377.1_3203106_3204096_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP023377.1_3204492_3205401_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP023377.1_3205592_3207614_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP023377.1_3208192_3208870_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP023377.1_3208862_3209618_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP023377.1_3209604_3210759_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP023377.1_3210755_3211796_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP023377.1_3211882_3213172_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP023377.1_3213230_3213707_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP023377.1_3213858_3215142_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|695aa|down_0|NZ_CP023377.1_3215375_3217460_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|155aa|down_1|NZ_CP023377.1_3218624_3219089_+	NA	NA|582aa|down_2|NZ_CP023377.1_3220548_3222294_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|528aa|down_3|NZ_CP023377.1_3222293_3223877_-	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|269aa|down_4|NZ_CP023377.1_3223889_3224696_-	PRK05463, PRK05463, putative hydro-lyase	NA|258aa|down_5|NZ_CP023377.1_3224692_3225466_-	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA	NA|415aa|down_6|NZ_CP023377.1_3225474_3226719_-	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|217aa|down_7|NZ_CP023377.1_3227058_3227709_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|468aa|down_8|NZ_CP023377.1_3228539_3229943_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|279aa|down_9|NZ_CP023377.1_3229983_3230820_-	COG3665, COG3665, Uncharacterized conserved protein [Function unknown]
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	8	3783629-3783725	8	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|415aa|up_9|NZ_CP023377.1_3774171_3775416_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_8|NZ_CP023377.1_3775507_3775966_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_7|NZ_CP023377.1_3776226_3777684_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_6|NZ_CP023377.1_3778209_3778476_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP023377.1_3778709_3779162_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP023377.1_3779171_3779570_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP023377.1_3779572_3779866_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP023377.1_3779917_3780973_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|NZ_CP023377.1_3781043_3781814_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP023377.1_3781773_3783513_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP023377.1_3783728_3784226_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP023377.1_3784401_3785175_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP023377.1_3785360_3785621_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP023377.1_3785623_3785902_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP023377.1_3786057_3786798_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP023377.1_3786768_3787536_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP023377.1_3787741_3788320_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP023377.1_3788559_3791004_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP023377.1_3791046_3791520_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP023377.1_3791673_3792444_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_002310675.1_ASM231067v1	NZ_CP023377	Escherichia coli strain 127 chromosome, complete genome	9	3995874-3996015	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|96aa|up_9|NZ_CP023377.1_3984865_3985153_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP023377.1_3985149_3986436_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP023377.1_3986486_3987428_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP023377.1_3987442_3988213_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP023377.1_3988685_3990200_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP023377.1_3990230_3991373_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP023377.1_3991501_3992719_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP023377.1_3992792_3994346_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP023377.1_3994454_3995240_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP023377.1_3995245_3995836_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP023377.1_3996044_3996440_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP023377.1_3996700_3999922_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP023377.1_3999939_4001088_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP023377.1_4001543_4002365_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP023377.1_4002531_4003446_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP023377.1_4003511_4004462_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP023377.1_4004463_4004913_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP023377.1_4005037_4005532_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP023377.1_4005531_4008348_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP023377.1_4008390_4009332_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_002310675.1_ASM231067v1	NZ_CP023380	Escherichia coli strain 127 plasmid p43, complete sequence	1	15376-15515	1	PILER-CR	no			Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA|166aa|down_0|NZ_CP023380.1_15769_16267_-,NA|196aa|down_3|NZ_CP023380.1_19380_19968_-,NA|107aa|down_4|NZ_CP023380.1_19994_20315_-,NA|103aa|down_7|NZ_CP023380.1_21285_21594_-,NA|80aa|down_8|NZ_CP023380.1_21696_21936_-	NA|287aa|up_9|NZ_CP023380.1_7240_8101_+	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|101aa|up_8|NZ_CP023380.1_8464_8767_-	pfam14300, DUF4375, Domain of unknown function (DUF4375)	NA|220aa|up_7|NZ_CP023380.1_8860_9520_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|299aa|up_6|NZ_CP023380.1_9624_10521_-	pfam00589, Phage_integrase, Phage integrase family	NA|175aa|up_5|NZ_CP023380.1_10846_11371_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_4|NZ_CP023380.1_11465_11939_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|403aa|up_3|NZ_CP023380.1_12091_13300_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|179aa|up_2|NZ_CP023380.1_13608_14145_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP023380.1_14259_14586_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP023380.1_14773_15013_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|166aa|down_0|NZ_CP023380.1_15769_16267_-	NA	NA|155aa|down_1|NZ_CP023380.1_16529_16994_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|69aa|down_2|NZ_CP023380.1_17011_17218_-	PRK10945, PRK10945, hemolysin expression modulator Hha	NA|196aa|down_3|NZ_CP023380.1_19380_19968_-	NA	NA|107aa|down_4|NZ_CP023380.1_19994_20315_-	NA	NA|135aa|down_5|NZ_CP023380.1_20374_20779_-	COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid metabolism]	NA|165aa|down_6|NZ_CP023380.1_20794_21289_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|103aa|down_7|NZ_CP023380.1_21285_21594_-	NA	NA|80aa|down_8|NZ_CP023380.1_21696_21936_-	NA	NA|102aa|down_9|NZ_CP023380.1_21990_22296_-	pfam07424, TrbM, TrbM
