assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002310655.1_ASM231065v1	NZ_CP023353	Escherichia coli strain 746 chromosome, complete genome	1	1197448-1198696	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,20,20	20	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,RT	NA,NA	NA|919aa|up_9|NZ_CP023353.1_1184040_1186797_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP023353.1_1186853_1188155_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP023353.1_1188202_1190437_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP023353.1_1190514_1190763_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP023353.1_1190762_1191098_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP023353.1_1191169_1191961_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP023353.1_1192188_1193826_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP023353.1_1193913_1195212_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP023353.1_1195271_1196144_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP023353.1_1196437_1197109_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP023353.1_1199333_1200812_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP023353.1_1200838_1202116_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP023353.1_1202435_1203221_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP023353.1_1203290_1204745_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP023353.1_1204838_1206176_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP023353.1_1206153_1206933_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP023353.1_1206929_1207790_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP023353.1_1207889_1209238_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP023353.1_1209372_1209948_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP023353.1_1209964_1210225_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002310655.1_ASM231065v1	NZ_CP023353	Escherichia coli strain 746 chromosome, complete genome	2	1225835-1226473	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGTCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|NZ_CP023353.1_1215830_1216565_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP023353.1_1216829_1216982_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP023353.1_1217176_1219876_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP023353.1_1219973_1221536_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP023353.1_1221532_1222069_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP023353.1_1222083_1223139_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP023353.1_1223149_1223896_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP023353.1_1223877_1224528_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP023353.1_1224524_1225448_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP023353.1_1225444_1225738_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP023353.1_1226554_1227592_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP023353.1_1227843_1228752_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP023353.1_1228753_1230181_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP023353.1_1230180_1230786_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP023353.1_1230835_1231159_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP023353.1_1231352_1231664_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP023353.1_1231682_1232393_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP023353.1_1232392_1232872_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP023353.1_1232868_1233918_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP023353.1_1233898_1234660_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002310655.1_ASM231065v1	NZ_CP023353	Escherichia coli strain 746 chromosome, complete genome	3	2423340-2423463	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP023353.1_2432359_2432449_+	NA|471aa|up_9|NZ_CP023353.1_2412793_2414206_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP023353.1_2414762_2414972_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP023353.1_2415427_2416054_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP023353.1_2416074_2418177_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP023353.1_2418180_2418828_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP023353.1_2418891_2419560_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP023353.1_2419556_2420342_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP023353.1_2420345_2421158_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP023353.1_2421169_2422774_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP023353.1_2422899_2423205_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP023353.1_2423777_2425034_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP023353.1_2425074_2426448_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP023353.1_2426662_2427304_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP023353.1_2427343_2428492_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP023353.1_2428782_2429994_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP023353.1_2430106_2431039_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP023353.1_2431035_2432061_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP023353.1_2432359_2432449_+	NA	NA|390aa|down_8|NZ_CP023353.1_2432614_2433784_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP023353.1_2433929_2434511_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002310655.1_ASM231065v1	NZ_CP023353	Escherichia coli strain 746 chromosome, complete genome	4	3165192-3165283	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP023353.1_3154442_3154652_-,NA	NA|70aa|up_9|NZ_CP023353.1_3154442_3154652_-	NA	NA|1321aa|up_8|NZ_CP023353.1_3154706_3158669_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP023353.1_3158708_3159347_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP023353.1_3159634_3160726_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP023353.1_3160725_3161418_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP023353.1_3161429_3161816_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP023353.1_3161823_3162624_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP023353.1_3162633_3163224_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP023353.1_3163234_3163729_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP023353.1_3163749_3165078_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP023353.1_3165706_3166303_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP023353.1_3166323_3166551_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP023353.1_3166588_3167830_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP023353.1_3168122_3169379_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP023353.1_3169638_3170559_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP023353.1_3170558_3170864_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP023353.1_3170956_3171556_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP023353.1_3171552_3174099_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP023353.1_3174098_3175271_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP023353.1_3175400_3176093_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002310655.1_ASM231065v1	NZ_CP023353	Escherichia coli strain 746 chromosome, complete genome	5	4209759-4209891	3	PILER-CR	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,RT	NA,NA	NA|283aa|up_9|NZ_CP023353.1_4200298_4201147_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|NZ_CP023353.1_4201447_4201681_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP023353.1_4201766_4202246_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP023353.1_4202437_4204300_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP023353.1_4204292_4204823_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP023353.1_4204930_4206262_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP023353.1_4206320_4206608_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP023353.1_4206604_4207891_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP023353.1_4207941_4208883_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP023353.1_4208897_4209668_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP023353.1_4210140_4211655_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP023353.1_4211685_4212828_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP023353.1_4212956_4214174_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP023353.1_4214247_4215801_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP023353.1_4215909_4216695_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP023353.1_4216700_4217291_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP023353.1_4217409_4217805_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP023353.1_4218065_4221284_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP023353.1_4221301_4222450_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP023353.1_4222905_4223727_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
