assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	1	663852-663969	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP023359.1_664042_664207_-	NA|115aa|up_9|NZ_CP023359.1_651573_651918_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP023359.1_652106_653045_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP023359.1_653143_654133_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP023359.1_654154_655486_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP023359.1_655511_656720_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP023359.1_656753_659048_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP023359.1_659061_659451_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP023359.1_659522_660887_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP023359.1_661161_662493_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP023359.1_662520_663831_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP023359.1_664042_664207_-	NA	NA|234aa|down_1|NZ_CP023359.1_664229_664931_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP023359.1_665035_665932_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP023359.1_665982_666339_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP023359.1_666580_666946_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP023359.1_667238_668225_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP023359.1_668294_668777_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP023359.1_668872_669172_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP023359.1_669161_669566_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP023359.1_669568_669874_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	2	1051723-1053278	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	25,25,12	25	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|121aa|up_3|NZ_CP023359.1_1048619_1048982_-,NA	NA|745aa|up_9|NZ_CP023359.1_1041555_1043790_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP023359.1_1043867_1044116_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP023359.1_1044115_1044451_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP023359.1_1044521_1045313_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP023359.1_1045540_1047178_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP023359.1_1047265_1048564_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP023359.1_1048619_1048982_-	NA	NA|302aa|up_2|NZ_CP023359.1_1049017_1049923_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP023359.1_1049936_1050539_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP023359.1_1050711_1051383_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|388aa|down_0|NZ_CP023359.1_1053418_1054581_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|493aa|down_1|NZ_CP023359.1_1055177_1056656_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|NZ_CP023359.1_1056682_1057960_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|NZ_CP023359.1_1058278_1059064_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NZ_CP023359.1_1059133_1060588_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|NZ_CP023359.1_1060681_1062019_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP023359.1_1061996_1062776_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP023359.1_1062772_1063633_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP023359.1_1063780_1064356_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP023359.1_1064372_1064633_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	3	1080242-1082771	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	41,41,30	41	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP023359.1_1070238_1070973_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP023359.1_1071237_1071390_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP023359.1_1071583_1074283_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP023359.1_1074380_1075943_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP023359.1_1075939_1076479_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP023359.1_1076490_1077546_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP023359.1_1077556_1078303_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP023359.1_1078284_1078935_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP023359.1_1078931_1079852_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP023359.1_1079851_1080145_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP023359.1_1082852_1083890_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP023359.1_1084141_1085050_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP023359.1_1085051_1086479_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP023359.1_1086478_1087084_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP023359.1_1087133_1087457_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP023359.1_1087650_1087962_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP023359.1_1087980_1088691_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP023359.1_1088690_1089170_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP023359.1_1089166_1090216_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|209aa|down_9|NZ_CP023359.1_1090950_1091577_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	4	2192050-2192173	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP023359.1_2201069_2201159_+	NA|471aa|up_9|NZ_CP023359.1_2181503_2182916_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP023359.1_2183472_2183682_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP023359.1_2184137_2184764_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP023359.1_2184784_2186887_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP023359.1_2186890_2187538_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP023359.1_2187601_2188270_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP023359.1_2188266_2189052_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP023359.1_2189055_2189868_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP023359.1_2189879_2191484_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP023359.1_2191609_2191915_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP023359.1_2192487_2193744_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP023359.1_2193784_2195158_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP023359.1_2195372_2196014_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP023359.1_2196053_2197202_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP023359.1_2197492_2198704_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP023359.1_2198816_2199749_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP023359.1_2199745_2200771_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP023359.1_2201069_2201159_+	NA	NA|390aa|down_8|NZ_CP023359.1_2201324_2202494_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP023359.1_2202639_2203221_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	5	2828878-2828991	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_8|NZ_CP023359.1_2824462_2824603_-,NA|34aa|up_3|NZ_CP023359.1_2825863_2825965_-,NA|58aa|up_1|NZ_CP023359.1_2827543_2827717_-,NA	NA|126aa|up_9|NZ_CP023359.1_2823999_2824377_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|47aa|up_8|NZ_CP023359.1_2824462_2824603_-	NA	NA|121aa|up_7|NZ_CP023359.1_2824599_2824962_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_6|NZ_CP023359.1_2824958_2825249_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_5|NZ_CP023359.1_2825241_2825412_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_4|NZ_CP023359.1_2825411_2825867_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_3|NZ_CP023359.1_2825863_2825965_-	NA	NA|165aa|up_2|NZ_CP023359.1_2826902_2827397_-	pfam11319, VasI, Type VI secretion system VasI, EvfG, VC_A0118	NA|58aa|up_1|NZ_CP023359.1_2827543_2827717_-	NA	NA|234aa|up_0|NZ_CP023359.1_2827713_2828415_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP023359.1_2829427_2829967_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP023359.1_2830036_2830267_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP023359.1_2830371_2831061_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|282aa|down_3|NZ_CP023359.1_2831140_2831986_+	pfam15969, RexA, Intracellular sensor of Lambda phage, Abi component	NA|148aa|down_4|NZ_CP023359.1_2832000_2832444_+	pfam15968, RexB, Membrane-anchored ion channel, Abi component	NA|69aa|down_5|NZ_CP023359.1_2832915_2833122_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP023359.1_2833197_2833494_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_7|NZ_CP023359.1_2833499_2834285_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_8|NZ_CP023359.1_2834281_2834962_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|53aa|down_9|NZ_CP023359.1_2834958_2835117_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	6	2966154-2966245	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP023359.1_2955396_2955606_-,NA	NA|70aa|up_9|NZ_CP023359.1_2955396_2955606_-	NA	NA|1321aa|up_8|NZ_CP023359.1_2955660_2959623_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP023359.1_2959662_2960301_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP023359.1_2960588_2961680_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP023359.1_2961679_2962372_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP023359.1_2962383_2962770_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP023359.1_2962777_2963578_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP023359.1_2963587_2964178_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP023359.1_2964188_2964683_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP023359.1_2964703_2966032_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP023359.1_2966668_2967265_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP023359.1_2967285_2967513_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP023359.1_2967550_2968792_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|418aa|down_3|NZ_CP023359.1_2969086_2970340_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP023359.1_2970599_2971520_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP023359.1_2971519_2971825_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP023359.1_2971976_2972576_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP023359.1_2972572_2975119_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP023359.1_2975118_2976291_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP023359.1_2976420_2977113_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	7	3230996-3231141	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_CP023359.1_3218900_3219890_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP023359.1_3220286_3221195_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP023359.1_3221386_3223408_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP023359.1_3223986_3224664_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP023359.1_3224656_3225412_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP023359.1_3225398_3226553_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP023359.1_3226549_3227590_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP023359.1_3227676_3228966_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP023359.1_3229024_3229501_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP023359.1_3229652_3230936_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP023359.1_3231169_3233431_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP023359.1_3233613_3235047_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP023359.1_3235122_3236175_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP023359.1_3236358_3237312_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP023359.1_3237352_3238348_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP023359.1_3238502_3239321_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP023359.1_3239321_3240380_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP023359.1_3240382_3241072_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP023359.1_3241071_3241845_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP023359.1_3242011_3242161_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	8	3776192-3776285	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GGGGACTGATTTGTGCGCGTTGTTACATCG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|326aa|up_5|NZ_CP023359.1_3770506_3771484_-,NA|310aa|down_9|NZ_CP023359.1_3782576_3783506_+	NA|131aa|up_9|NZ_CP023359.1_3766272_3766665_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_8|NZ_CP023359.1_3766687_3768004_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_7|NZ_CP023359.1_3768209_3769124_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_6|NZ_CP023359.1_3769609_3770452_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_5|NZ_CP023359.1_3770506_3771484_-	NA	NA|310aa|up_4|NZ_CP023359.1_3771500_3772430_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_3|NZ_CP023359.1_3772444_3773821_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|up_2|NZ_CP023359.1_3774009_3774309_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|367aa|up_1|NZ_CP023359.1_3774308_3775409_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|222aa|up_0|NZ_CP023359.1_3775423_3776089_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_0|NZ_CP023359.1_3776360_3777146_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_1|NZ_CP023359.1_3777324_3778062_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_2|NZ_CP023359.1_3778061_3779264_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_3|NZ_CP023359.1_3779348_3780062_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_4|NZ_CP023359.1_3780061_3780493_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_5|NZ_CP023359.1_3780495_3780831_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_6|NZ_CP023359.1_3780912_3781650_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_7|NZ_CP023359.1_3781730_3782009_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|143aa|down_8|NZ_CP023359.1_3782021_3782450_+	pfam05130, FlgN, FlgN protein	NA|310aa|down_9|NZ_CP023359.1_3782576_3783506_+	NA
GCF_002310555.1_ASM231055v1	NZ_CP023359	Escherichia coli strain 1943 chromosome, complete genome	9	4210294-4210443	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|165aa|up_8|NZ_CP023359.1_4197954_4198449_+,NA|111aa|up_5|NZ_CP023359.1_4201592_4201925_+,NA	NA|155aa|up_9|NZ_CP023359.1_4197249_4197714_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|165aa|up_8|NZ_CP023359.1_4197954_4198449_+	NA	NA|282aa|up_7|NZ_CP023359.1_4198509_4199355_-	pfam13271, DUF4062, Domain of unknown function (DUF4062)	NA|156aa|up_6|NZ_CP023359.1_4200120_4200588_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_5|NZ_CP023359.1_4201592_4201925_+	NA	NA|637aa|up_4|NZ_CP023359.1_4202057_4203968_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|501aa|up_3|NZ_CP023359.1_4204633_4206136_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP023359.1_4206296_4207379_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP023359.1_4207378_4208479_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP023359.1_4208745_4210257_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP023359.1_4210610_4211054_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP023359.1_4211053_4213909_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP023359.1_4213963_4215160_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP023359.1_4215352_4215856_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP023359.1_4215901_4216318_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|338aa|down_5|NZ_CP023359.1_4216479_4217493_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP023359.1_4219335_4219788_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP023359.1_4219932_4220526_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_8|NZ_CP023359.1_4220596_4221310_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP023359.1_4221440_4221836_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_002310555.1_ASM231055v1	NZ_CP023360	Escherichia coli strain 1943 plasmid p54, complete sequence	1	52683-52802	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|182aa|up_8|NZ_CP023360.1_48311_48857_-,NA|91aa|up_7|NZ_CP023360.1_49182_49455_-,NA|60aa|up_6|NZ_CP023360.1_49686_49866_-,NA|110aa|up_5|NZ_CP023360.1_49908_50238_-,NA|72aa|up_4|NZ_CP023360.1_50330_50546_-,NA|82aa|up_3|NZ_CP023360.1_50535_50781_-,NA|108aa|up_2|NZ_CP023360.1_50828_51152_-,NA	NA|389aa|up_9|NZ_CP023360.1_47142_48309_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|182aa|up_8|NZ_CP023360.1_48311_48857_-	NA	NA|91aa|up_7|NZ_CP023360.1_49182_49455_-	NA	NA|60aa|up_6|NZ_CP023360.1_49686_49866_-	NA	NA|110aa|up_5|NZ_CP023360.1_49908_50238_-	NA	NA|72aa|up_4|NZ_CP023360.1_50330_50546_-	NA	NA|82aa|up_3|NZ_CP023360.1_50535_50781_-	NA	NA|108aa|up_2|NZ_CP023360.1_50828_51152_-	NA	NA|94aa|up_1|NZ_CP023360.1_51297_51579_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP023360.1_51568_51820_-	PRK02854, PRK02854, primosomal protein DnaT	NA|280aa|down_0|NZ_CP023360.1_53054_53894_+	pfam01051, Rep_3, Initiator Replication protein	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
