assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002291405.1_ASM229140v1	NZ_CP023284	Variovorax boronicumulans strain J1 chromosome, complete genome	1	4567937-4568089	1	PILER-CR	no		WYL,csa3,DEDDh,DinG,Cas9_archaeal,cas3	Orphan	CACGGCCACGCGCAGCACCGTGCCGGCCGGCAGCGCCAAGGC	42	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,DinG,Cas9_archaeal,cas3	NA|76aa|up_7|NZ_CP023284.1_4545261_4545489_-,NA|561aa|down_5|NZ_CP023284.1_4581724_4583407_+	NA|169aa|up_9|NZ_CP023284.1_4542978_4543485_+	PRK10871, nlpD, murein hydrolase activator NlpD	NA|542aa|up_8|NZ_CP023284.1_4543497_4545123_-	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|76aa|up_7|NZ_CP023284.1_4545261_4545489_-	NA	NA|186aa|up_6|NZ_CP023284.1_4545549_4546107_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|322aa|up_5|NZ_CP023284.1_4558869_4559835_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|182aa|up_4|NZ_CP023284.1_4559908_4560454_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|241aa|up_3|NZ_CP023284.1_4560464_4561187_-	smart00965, STN, Secretin and TonB N terminus short domain	NA|429aa|up_2|NZ_CP023284.1_4561293_4562580_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|155aa|up_1|NZ_CP023284.1_4562644_4563109_-	pfam13103, TonB_2, TonB C terminal	NA|248aa|up_0|NZ_CP023284.1_4563141_4563885_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|340aa|down_0|NZ_CP023284.1_4576638_4577658_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|185aa|down_1|NZ_CP023284.1_4577654_4578209_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|223aa|down_2|NZ_CP023284.1_4578216_4578885_-	smart00965, STN, Secretin and TonB N terminus short domain	NA|219aa|down_3|NZ_CP023284.1_4579077_4579734_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|606aa|down_4|NZ_CP023284.1_4579741_4581559_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|561aa|down_5|NZ_CP023284.1_4581724_4583407_+	NA	NA|112aa|down_6|NZ_CP023284.1_4583436_4583772_+	PRK02237, PRK02237, YnfA family protein	NA|126aa|down_7|NZ_CP023284.1_4583778_4584156_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|132aa|down_8|NZ_CP023284.1_4584198_4584594_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|219aa|down_9|NZ_CP023284.1_4584598_4585255_-	pfam11445, DUF2894, Protein of unknown function (DUF2894)
GCF_002291405.1_ASM229140v1	NZ_CP023284	Variovorax boronicumulans strain J1 chromosome, complete genome	2	5526923-5530330	1	CRT	no		WYL,csa3,DEDDh,DinG,Cas9_archaeal,cas3	Orphan	GTGCTCAGNCCNGNNGAC	18	16	158	5528810-5528887|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529479-5529514|5529575-5529598|5529575-5529598|5529575-5529598|5529575-5529598|5529575-5529598|5529575-5529598|5529575-5529598|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529617-5529652|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529671-5529694|5529755-5529790|5529755-5529790|5529755-5529790|5529755-5529790|5529755-5529790|5529755-5529790|5529755-5529790|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529809-5529832|5529851-5529874|5529851-5529874|5529851-5529874|5529851-5529874|5529851-5529874|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529893-5529928|5529947-5529970|5529947-5529970|5529947-5529970|5529947-5529970|5529947-5529970|5529947-5529970|5529989-5530024|5530043-5530066|5530043-5530066|5530043-5530066|5530043-5530066|5530043-5530066|5530085-5530120|5530085-5530120|5530181-5530216|5530181-5530216|5530181-5530216|5530235-5530258|5530235-5530258|5530235-5530258|5530235-5530258|5530235-5530258|5530277-5530312	NZ_CP023284.1_5530949-5531026|NZ_CP023284.1_5533031-5533066|NZ_CP023284.1_5537303-5537338|NZ_CP023284.1_5530469-5530504|NZ_CP023284.1_5531867-5531902|NZ_CP023284.1_5536199-5536234|NZ_CP023284.1_5536403-5536438|NZ_CP023284.1_5537507-5537542|NZ_CP023284.1_1688705-1688670|NZ_CP023284.1_1689377-1689342|NZ_CP023284.1_1689761-1689726|NZ_CP023284.1_1689953-1689918|NZ_CP023284.1_1691969-1691934|NZ_CP023284.1_1693397-1693362|NZ_CP023284.1_5533373-5533396|NZ_CP023284.1_5536157-5536180|NZ_CP023284.1_5532143-5532166|NZ_CP023284.1_5533673-5533696|NZ_CP023284.1_5533823-5533846|NZ_CP023284.1_5533973-5533996|NZ_CP023284.1_5534477-5534500|NZ_CP023284.1_5530661-5530696|NZ_CP023284.1_5530469-5530504|NZ_CP023284.1_5533031-5533066|NZ_CP023284.1_5536049-5536084|NZ_CP023284.1_5537399-5537434|NZ_CP023284.1_1688513-1688478|NZ_CP023284.1_1688801-1688766|NZ_CP023284.1_1688897-1688862|NZ_CP023284.1_1689569-1689534|NZ_CP023284.1_1691009-1690974|NZ_CP023284.1_1692161-1692126|NZ_CP023284.1_1693025-1692990|NZ_CP023284.1_1693121-1693086|NZ_CP023284.1_1693259-1693224|NZ_CP023284.1_1693781-1693746|NZ_CP023284.1_5534969-5534992|NZ_CP023284.1_5531783-5531806|NZ_CP023284.1_5534423-5534446|NZ_CP023284.1_5536007-5536030|NZ_CP023284.1_5530427-5530450|NZ_CP023284.1_5533523-5533546|NZ_CP023284.1_5533619-5533642|NZ_CP023284.1_5534669-5534692|NZ_CP023284.1_5535419-5535442|NZ_CP023284.1_5537207-5537230|NZ_CP023284.1_1688801-1688766|NZ_CP023284.1_1689665-1689630|NZ_CP023284.1_1693493-1693458|NZ_CP023284.1_1693589-1693554|NZ_CP023284.1_1693877-1693842|NZ_CP023284.1_5531333-5531368|NZ_CP023284.1_5533865-5533900|NZ_CP023284.1_5526899-5526922|NZ_CP023284.1_5530961-5530984|NZ_CP023284.1_5534231-5534254|NZ_CP023284.1_5534927-5534950|NZ_CP023284.1_5536715-5536738|NZ_CP023284.1_5536865-5536888|NZ_CP023284.1_5537411-5537434|NZ_CP023284.1_1690133-1690110|NZ_CP023284.1_1690325-1690302|NZ_CP023284.1_1690517-1690494|NZ_CP023284.1_1690709-1690686|NZ_CP023284.1_1691093-1691070|NZ_CP023284.1_1691285-1691262|NZ_CP023284.1_1691477-1691454|NZ_CP023284.1_1691669-1691646|NZ_CP023284.1_1692053-1692030|NZ_CP023284.1_1692245-1692222|NZ_CP023284.1_1692437-1692414|NZ_CP023284.1_1692629-1692606|NZ_CP023284.1_1692821-1692798|NZ_CP023284.1_1693673-1693650|NZ_CP023284.1_1694153-1694130|NZ_CP023284.1_5530481-5530504|NZ_CP023284.1_5531645-5531668|NZ_CP023284.1_5533043-5533066|NZ_CP023284.1_5533577-5533600|NZ_CP023284.1_5535173-5535196|NZ_CP023284.1_5536211-5536234|NZ_CP023284.1_5537519-5537542|NZ_CP023284.1_1688405-1688382|NZ_CP023284.1_1688501-1688478|NZ_CP023284.1_1688693-1688670|NZ_CP023284.1_1688885-1688862|NZ_CP023284.1_1689365-1689342|NZ_CP023284.1_1689749-1689726|NZ_CP023284.1_1689941-1689918|NZ_CP023284.1_1690997-1690974|NZ_CP023284.1_1691957-1691934|NZ_CP023284.1_1692149-1692126|NZ_CP023284.1_1693385-1693362|NZ_CP023284.1_1693769-1693746|NZ_CP023284.1_5530673-5530696|NZ_CP023284.1_5531153-5531176|NZ_CP023284.1_5531345-5531368|NZ_CP023284.1_5532689-5532712|NZ_CP023284.1_5533481-5533504|NZ_CP023284.1_5533727-5533750|NZ_CP023284.1_5533877-5533900|NZ_CP023284.1_5534381-5534404|NZ_CP023284.1_5535077-5535100|NZ_CP023284.1_5535815-5535838|NZ_CP023284.1_5536265-5536288|NZ_CP023284.1_5536565-5536588|NZ_CP023284.1_5537315-5537338|NZ_CP023284.1_1688981-1688958|NZ_CP023284.1_1689557-1689534|NZ_CP023284.1_1691861-1691838|NZ_CP023284.1_1693109-1693086|NZ_CP023284.1_1693247-1693224|NZ_CP023284.1_1693481-1693458|NZ_CP023284.1_1693577-1693554|NZ_CP023284.1_1694057-1694034|NZ_CP023284.1_5531003-5531026|NZ_CP023284.1_5532935-5532958|NZ_CP023284.1_5531099-5531122|NZ_CP023284.1_5532731-5532754|NZ_CP023284.1_5536607-5536630|NZ_CP023284.1_5530949-5530984|NZ_CP023284.1_5534219-5534254|NZ_CP023284.1_5534915-5534950|NZ_CP023284.1_5536703-5536738|NZ_CP023284.1_5536853-5536888|NZ_CP023284.1_1692065-1692030|NZ_CP023284.1_1693685-1693650|NZ_CP023284.1_1694069-1694034|NZ_CP023284.1_1694165-1694130|NZ_CP023284.1_5530469-5530504|NZ_CP023284.1_5531141-5531176|NZ_CP023284.1_5533031-5533066|NZ_CP023284.1_5533565-5533600|NZ_CP023284.1_5537399-5537434|NZ_CP023284.1_5537507-5537542|NZ_CP023284.1_5530715-5530738|NZ_CP023284.1_5530331-5530354|NZ_CP023284.1_5531483-5531506|NZ_CP023284.1_5532335-5532358|NZ_CP023284.1_5536307-5536330|NZ_CP023284.1_1688459-1688436|NZ_CP023284.1_5531729-5531764|NZ_CP023284.1_5532239-5532262|NZ_CP023284.1_5534327-5534350|NZ_CP023284.1_5531387-5531410|NZ_CP023284.1_1694111-1694088|NZ_CP023284.1_5531195-5531218|NZ_CP023284.1_5530565-5530600|NZ_CP023284.1_5531729-5531764|NZ_CP023284.1_5530853-5530888|NZ_CP023284.1_5531045-5531080|NZ_CP023284.1_5534615-5534650|NZ_CP023284.1_1693439-1693416|NZ_CP023284.1_5530715-5530738|NZ_CP023284.1_5533235-5533258|NZ_CP023284.1_5534273-5534296|NZ_CP023284.1_5535215-5535238|NZ_CP023284.1_5535953-5535988	NA	45	45	Orphan	WYL,csa3,DEDDh,DinG,Cas9_archaeal,cas3	NA|138aa|up_4|NZ_CP023284.1_5518966_5519380_-,NA|197aa|up_1|NZ_CP023284.1_5522654_5523245_-,NA|113aa|down_0|NZ_CP023284.1_5538813_5539152_+,NA|287aa|down_2|NZ_CP023284.1_5540321_5541182_+,NA|186aa|down_4|NZ_CP023284.1_5543948_5544506_-	NA|434aa|up_9|NZ_CP023284.1_5511869_5513171_-	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|393aa|up_8|NZ_CP023284.1_5513193_5514372_-	PRK10378, PRK10378, inactive ferrous ion transporter periplasmic protein EfeO; Provisional	NA|279aa|up_7|NZ_CP023284.1_5514384_5515221_-	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein	NA|154aa|up_6|NZ_CP023284.1_5515342_5515804_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|956aa|up_5|NZ_CP023284.1_5515808_5518676_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|138aa|up_4|NZ_CP023284.1_5518966_5519380_-	NA	NA|285aa|up_3|NZ_CP023284.1_5519512_5520367_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|753aa|up_2|NZ_CP023284.1_5520272_5522531_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|197aa|up_1|NZ_CP023284.1_5522654_5523245_-	NA	NA|389aa|up_0|NZ_CP023284.1_5523256_5524423_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|113aa|down_0|NZ_CP023284.1_5538813_5539152_+	NA	NA|381aa|down_1|NZ_CP023284.1_5539148_5540291_+	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|287aa|down_2|NZ_CP023284.1_5540321_5541182_+	NA	NA|862aa|down_3|NZ_CP023284.1_5541269_5543855_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|186aa|down_4|NZ_CP023284.1_5543948_5544506_-	NA	NA|339aa|down_5|NZ_CP023284.1_5544529_5545546_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|263aa|down_6|NZ_CP023284.1_5545542_5546331_-	PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional	NA|329aa|down_7|NZ_CP023284.1_5546346_5547333_-	PRK05442, PRK05442, malate dehydrogenase; Provisional	NA|253aa|down_8|NZ_CP023284.1_5547513_5548272_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|185aa|down_9|NZ_CP023284.1_5548397_5548952_+	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins
GCF_002291405.1_ASM229140v1	NZ_CP023284	Variovorax boronicumulans strain J1 chromosome, complete genome	3	6944361-6944551	2	PILER-CR	no		WYL,csa3,DEDDh,DinG,Cas9_archaeal,cas3	Orphan	GGCCAACACGCTGGTCAACAACGGCAGCATCGCCACCACGGGCGCCA	47	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,DinG,Cas9_archaeal,cas3	NA|241aa|up_9|NZ_CP023284.1_6934396_6935119_+,NA|172aa|up_0|NZ_CP023284.1_6943161_6943677_-,NA	NA|241aa|up_9|NZ_CP023284.1_6934396_6935119_+	NA	NA|253aa|up_8|NZ_CP023284.1_6935200_6935959_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|257aa|up_7|NZ_CP023284.1_6936052_6936823_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|542aa|up_6|NZ_CP023284.1_6936853_6938479_+	pfam05977, MFS_3, Transmembrane secretion effector	NA|108aa|up_5|NZ_CP023284.1_6938491_6938815_-	COG5605, COG5605, Predicted small integral membrane protein [Function unknown]	NA|233aa|up_4|NZ_CP023284.1_6938826_6939525_-	cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III subfamily	NA|206aa|up_3|NZ_CP023284.1_6939536_6940154_-	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily	NA|596aa|up_2|NZ_CP023284.1_6940150_6941938_-	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I	NA|390aa|up_1|NZ_CP023284.1_6941934_6943104_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|172aa|up_0|NZ_CP023284.1_6943161_6943677_-	NA	NA|274aa|down_0|NZ_CP023284.1_6946667_6947489_+	pfam02633, Creatininase, Creatinine amidohydrolase	NA|270aa|down_1|NZ_CP023284.1_6947503_6948313_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|286aa|down_2|NZ_CP023284.1_6948320_6949178_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|466aa|down_3|NZ_CP023284.1_6949149_6950547_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|343aa|down_4|NZ_CP023284.1_6950606_6951635_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|198aa|down_5|NZ_CP023284.1_6951775_6952369_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|321aa|down_6|NZ_CP023284.1_6952390_6953353_+	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|217aa|down_7|NZ_CP023284.1_6953349_6954000_+	TIGR03613, RutR, pyrimidine utilization regulatory protein R	NA|156aa|down_8|NZ_CP023284.1_6953992_6954460_-	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|402aa|down_9|NZ_CP023284.1_6954456_6955662_-	PRK07583, PRK07583, cytosine deaminase
