The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	1179658	1306084	5029617	transposase,holin,terminase,head,tail,capsid	Stenotrophomonas_phage(25.93%)	103	NA	NA
WP_087942126.1|1179658_1180815_-|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005915848.1|1181691_1182153_-	cell wall hydrolase	NA	NA	NA	NA	NA
WP_005915850.1|1183515_1185555_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
WP_005915853.1|1185759_1186782_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005915855.1|1187197_1188295_+	OmpA family protein	NA	NA	NA	NA	NA
WP_011050648.1|1188487_1189003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033479672.1|1189022_1189883_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_005915861.1|1189833_1190226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005915864.1|1190228_1191437_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	26.6	1.1e-19
WP_005915866.1|1191527_1192625_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005915868.1|1192628_1193489_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
WP_005915870.1|1193485_1194439_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
WP_005915872.1|1194446_1195478_+	sulfate/molybdate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.2	4.4e-25
WP_003490453.1|1195760_1196477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915874.1|1197219_1198242_-	L-threonine 3-dehydrogenase	NA	NA	NA	NA	NA
WP_005915877.1|1198766_1201187_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005915879.1|1201295_1203377_+|holin	phospholipase C, phosphocholine-specific	holin	NA	NA	NA	NA
WP_011050659.1|1203978_1204164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915881.1|1204257_1204902_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_125825479.1|1204921_1205500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915883.1|1205631_1206930_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_005915885.1|1206997_1208032_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_005915887.1|1208245_1208992_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003483730.1|1209022_1210489_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	39.9	4.1e-85
WP_005915889.1|1210684_1211509_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_005915893.1|1212123_1213377_+	peptidyl-Asp metalloendopeptidase	NA	NA	NA	NA	NA
WP_005915895.1|1213511_1213931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915897.1|1214115_1214859_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_005915899.1|1215343_1215886_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_005915901.1|1215866_1217003_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003483745.1|1217225_1218752_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003483747.1|1218924_1221027_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_011050669.1|1221139_1222483_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	33.3	6.5e-29
WP_003483753.1|1222540_1223230_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_033481919.1|1223412_1225059_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_005915911.1|1225208_1225517_+	glutaredoxin 3	NA	A0A2L0UZG6	Agrobacterium_phage	43.2	3.6e-07
WP_003483760.1|1225513_1225909_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003483762.1|1226135_1227143_+	isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_005915913.1|1227281_1228043_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_005915915.1|1228751_1229378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089504397.1|1230204_1231291_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_125825480.1|1234090_1234411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917750.1|1234428_1234881_-	phage virion morphogenesis protein	NA	V9IQH0	Stenotrophomonas_phage	58.8	3.6e-40
WP_005917748.1|1234868_1235288_-|tail	phage tail protein	tail	A0A2H4J906	uncultured_Caudovirales_phage	63.7	7.4e-40
WP_005917746.1|1235284_1235773_-	hypothetical protein	NA	V9IQW8	Stenotrophomonas_phage	50.3	3.8e-27
WP_080598371.1|1235772_1236414_-	glycoside hydrolase family 19 protein	NA	V9IQK6	Stenotrophomonas_phage	60.4	3.9e-48
WP_005917740.1|1236410_1236686_-|holin	phage holin family protein	holin	V9IQV8	Stenotrophomonas_phage	58.6	5.1e-21
WP_005917737.1|1236678_1237035_-	membrane protein	NA	V9IQG9	Stenotrophomonas_phage	56.1	5.9e-22
WP_005917735.1|1237039_1237249_-|tail	tail protein	tail	K4PAW7	Burkholderia_phage	59.4	7.0e-15
WP_005917732.1|1237248_1237716_-|head	head completion/stabilization protein	head	V9IQW6	Stenotrophomonas_phage	49.7	4.1e-31
WP_005917729.1|1237812_1238532_-|terminase	phage-related terminase	terminase	Q9ZXM2	Pseudomonas_virus	62.1	5.0e-68
WP_005917726.1|1238535_1239555_-|capsid	phage major capsid protein, P2 family	capsid	Q9ZXM3	Pseudomonas_virus	70.8	3.9e-135
WP_005917723.1|1239613_1240456_-|capsid	GPO family capsid scaffolding protein	capsid	A0A2H4J928	uncultured_Caudovirales_phage	52.7	8.4e-67
WP_005917720.1|1240577_1242362_+|terminase	terminase ATPase subunit family protein	terminase	V9IQL5	Stenotrophomonas_phage	76.5	2.7e-272
WP_095689862.1|1242680_1243768_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_095689863.1|1243898_1246031_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_005918005.1|1246524_1247412_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	32.0	6.0e-31
WP_033479676.1|1247589_1248066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003490678.1|1248091_1248769_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	27.4	7.4e-05
WP_078564941.1|1248938_1250096_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_080598376.1|1250198_1250594_-	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
WP_089504397.1|1251006_1252093_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_125825481.1|1252312_1252699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157733688.1|1252695_1252845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087942126.1|1253775_1254931_+|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005915836.1|1255480_1256089_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003491180.1|1256102_1256966_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_005915833.1|1258344_1260306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481911.1|1260372_1260789_-	pilin	NA	NA	NA	NA	NA
WP_157733689.1|1261138_1261516_+	EamA family transporter	NA	NA	NA	NA	NA
WP_005915828.1|1261520_1262315_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_050554799.1|1262317_1263358_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_157733690.1|1263350_1264007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915821.1|1264104_1265841_+	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA	NA
WP_005915819.1|1265937_1266057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915817.1|1266212_1266356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915815.1|1266542_1267937_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005915814.1|1268261_1269875_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_005915812.1|1270106_1271276_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_005915809.1|1271300_1272176_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA	NA
WP_005915804.1|1272591_1272963_+	endonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_078515381.1|1272967_1274626_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	38.0	1.7e-95
WP_005915800.1|1274644_1275622_-	hypothetical protein	NA	A0A0N9SJH5	Pseudomonas_phage	40.4	8.6e-55
WP_005915798.1|1275908_1276790_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_003488615.1|1276910_1277906_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_033479555.1|1277907_1278720_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_005915793.1|1278740_1279247_+	DUF4166 domain-containing protein	NA	NA	NA	NA	NA
WP_005915791.1|1279233_1279668_+	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA	NA
WP_005915788.1|1279820_1281689_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.9	6.3e-14
WP_005915786.1|1282408_1284886_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA	NA
WP_003488630.1|1285486_1286854_-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA	NA
WP_005915783.1|1286850_1288629_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
WP_005915781.1|1288677_1289436_-	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_005915778.1|1289657_1292093_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	23.4	3.7e-14
WP_076605054.1|1292354_1292795_+	DUF3574 domain-containing protein	NA	NA	NA	NA	NA
WP_033481905.1|1292761_1293826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003488646.1|1293963_1295565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915768.1|1297079_1297898_+	DUF3014 domain-containing protein	NA	NA	NA	NA	NA
WP_003488653.1|1298125_1298833_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005915765.1|1298878_1299187_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_005915762.1|1299556_1301716_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005915760.1|1301784_1303113_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_087942126.1|1304928_1306084_+|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
>prophage 2
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	1781479	1850685	5029617	transposase,tRNA,protease	Staphylococcus_phage(12.5%)	49	NA	NA
WP_005912929.1|1781479_1784122_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.2	1.7e-174
WP_005912936.1|1784698_1785343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003486816.1|1785365_1786394_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_033481585.1|1786390_1787260_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_005912943.1|1787316_1787730_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_005912944.1|1787888_1789424_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
WP_005912945.1|1789545_1790016_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_005912947.1|1790094_1790769_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_005912949.1|1791080_1794191_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005912951.1|1794542_1795277_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_005912953.1|1795415_1795988_+	Maf-like protein	NA	NA	NA	NA	NA
WP_003486835.1|1795987_1797487_+	ribonuclease G	NA	NA	NA	NA	NA
WP_005912955.1|1797656_1801577_+	TIGR02099 family protein	NA	NA	NA	NA	NA
WP_005912956.1|1801592_1802345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005912957.1|1802444_1803890_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_005912958.1|1804059_1804641_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_005912967.1|1804788_1806156_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_016849602.1|1806473_1806941_+	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
WP_005912970.1|1807010_1808087_-|protease	protease	protease	NA	NA	NA	NA
WP_003486850.1|1808541_1809417_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003486852.1|1809418_1809679_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033479125.1|1809710_1811012_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_005912972.1|1811381_1813085_-	alkaline phosphatase	NA	NA	NA	NA	NA
WP_005912974.1|1813227_1814568_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_005912975.1|1814577_1815414_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003486865.1|1815648_1816140_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003486867.1|1816347_1817097_-	C40 family peptidase	NA	A0A0K2SUC1	Clostridium_phage	38.5	1.2e-19
WP_003486869.1|1817206_1817749_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	39.3	6.1e-18
WP_003486870.1|1817858_1818338_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_005912977.1|1818573_1819818_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005912978.1|1819825_1821076_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005912980.1|1821072_1822443_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.0	4.9e-40
WP_080598298.1|1822922_1823321_+	cysteine methyltransferase	NA	NA	NA	NA	NA
WP_003486879.1|1823361_1824057_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_005912987.1|1824276_1826292_-	M13 family metallopeptidase	NA	NA	NA	NA	NA
WP_005912989.1|1826476_1828573_-	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.8	5.7e-72
WP_080598297.1|1828957_1831099_-	peptidase	NA	A0A1V0SHG2	Klosneuvirus	27.6	9.9e-72
WP_005912991.1|1831509_1833105_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005912992.1|1833216_1836279_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005912994.1|1839986_1840838_+	iron-sulfur cluster carrier protein ApbC	NA	Q8JL10	Natrialba_phage	27.0	9.3e-05
WP_005912996.1|1840934_1841504_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	70.6	4.1e-73
WP_003486896.1|1841659_1841845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003486900.1|1842425_1842593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005912999.1|1842620_1843055_-	HIT family protein	NA	NA	NA	NA	NA
WP_005913000.1|1843051_1843714_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_005913001.1|1844280_1845543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089504397.1|1845581_1846669_-|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005914316.1|1848601_1849108_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_078566327.1|1849467_1850685_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 3
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	2509886	2565938	5029617	transposase,tRNA,protease	uncultured_Mediterranean_phage(11.11%)	42	NA	NA
WP_005914460.1|2509886_2511023_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_005914461.1|2511019_2511478_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_005914463.1|2511728_2512049_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	1.0e-12
WP_005914464.1|2512191_2514474_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	44.9	3.9e-175
WP_002813418.1|2514756_2514975_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005914466.1|2515055_2515805_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_005914467.1|2516067_2517186_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003482910.1|2517243_2518212_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.5	1.5e-64
WP_003482906.1|2518495_2520853_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.8	2.5e-84
WP_005914468.1|2521003_2522932_+	DUF3857 and transglutaminase domain-containing protein	NA	NA	NA	NA	NA
WP_005914469.1|2523038_2523668_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_005914471.1|2523789_2527974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003482897.1|2528212_2529586_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.2	1.4e-74
WP_003482896.1|2529764_2530166_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_003482893.1|2530482_2531688_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005914474.1|2531844_2534217_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003482890.1|2534241_2534874_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005914476.1|2535091_2535517_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	40.9	1.3e-18
WP_005921296.1|2535535_2536741_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003482886.1|2536751_2537540_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_005914478.1|2537536_2538397_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005914479.1|2538467_2539106_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_078566135.1|2539102_2540323_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003482878.1|2540333_2541731_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_005914481.1|2542041_2543262_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_005914482.1|2543613_2544756_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_087959258.1|2545065_2547666_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003482865.1|2547748_2547964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005914486.1|2548343_2548916_+	DUF4142 domain-containing protein	NA	NA	NA	NA	NA
WP_005914487.1|2548919_2549450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005914488.1|2549463_2550633_+	glutathione-dependent formaldehyde dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.5	1.9e-08
WP_087942126.1|2552161_2553317_+|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005918020.1|2555258_2555531_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_005934416.1|2555719_2555920_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078514874.1|2556040_2556592_-	type III effector	NA	NA	NA	NA	NA
WP_154138535.1|2557149_2557326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005918028.1|2557338_2557530_+	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_033455135.1|2557546_2558449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033480615.1|2558448_2559681_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	33.2	4.7e-50
WP_089504397.1|2560309_2561396_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_033837207.1|2562071_2563619_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_005918049.1|2564966_2565938_+|transposase	IS1595-like element IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	2617127	2643146	5029617	transposase,coat	Xanthomonas_phage(51.85%)	39	NA	NA
WP_087942126.1|2617127_2618284_-|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_095689866.1|2618419_2618875_-	hypothetical protein	NA	A0A077JCZ5	Xanthomonas_phage	37.7	2.7e-19
WP_131442210.1|2619014_2619257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080598358.1|2619726_2620278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005916415.1|2620608_2620905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005916418.1|2620908_2621112_+	hypothetical protein	NA	A0A1D6ZIU2	Xanthomonas_phage	98.5	2.2e-29
WP_005916420.1|2621123_2621357_+	hypothetical protein	NA	A0A1W6DXZ2	Xanthomonas_phage	97.6	5.6e-13
WP_033481950.1|2621494_2622904_+	hypothetical protein	NA	A0A1D6ZIU5	Xanthomonas_phage	80.4	6.3e-184
WP_005916429.1|2622903_2623233_+	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	99.1	4.9e-55
WP_005916431.1|2623232_2624426_+	filamentous phage Cf1c related protein	NA	A0A1W6DXR3	Xanthomonas_phage	96.2	1.6e-217
WP_005916434.1|2624427_2625075_+	conjugal transfer protein TrbP	NA	A0A1W6DY89	Xanthomonas_phage	87.0	9.9e-108
WP_095689867.1|2625379_2625817_-	hypothetical protein	NA	A0A077JCZ5	Xanthomonas_phage	45.5	8.1e-21
WP_005918141.1|2625944_2626169_+	hypothetical protein	NA	A0A1W6DXK4	Xanthomonas_phage	91.3	2.8e-25
WP_033482069.1|2626331_2626511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033482068.1|2626503_2627610_+	replication protein	NA	S0F3I3	Stenotrophomonas_phage	74.5	5.0e-160
WP_005918136.1|2627606_2627903_+	hypothetical protein	NA	B1NI78	Stenotrophomonas_phage	66.3	1.5e-26
WP_005918133.1|2628041_2628158_+|coat	Phi-Lf prophage-derived minor coat protein	coat	NA	NA	NA	NA
WP_005918131.1|2628186_2628315_+|coat	Phi-Lf prophage-derived major coat protein	coat	NA	NA	NA	NA
WP_005918124.1|2629200_2629440_+	hypothetical protein	NA	Q9XJ91	Xanthomonas_phage	97.5	7.4e-37
WP_005918122.1|2629450_2629771_+	filamentous phage phiLf protein VI	NA	Q4LAU3	Stenotrophomonas_phage	46.2	1.2e-21
WP_033837633.1|2629772_2631095_+	filamentous phage phiLf protein I	NA	Q4LAU4	Stenotrophomonas_phage	55.5	1.3e-130
WP_005918116.1|2631124_2631517_+	hypothetical protein	NA	A0A077JCA3	Xanthomonas_phage	46.2	2.3e-19
WP_033837688.1|2631555_2631894_-	phage-like protein	NA	Q38057	Xanthomonas_phage	83.9	1.3e-50
WP_033837634.1|2632075_2632402_+	hypothetical protein	NA	S0F2N2	Stenotrophomonas_phage	43.0	4.2e-14
WP_033837635.1|2632436_2633591_-	zonular occludens toxin	NA	B1NI81	Stenotrophomonas_phage	63.0	1.2e-137
WP_033837636.1|2633592_2633883_-	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_152527015.1|2633882_2635274_-	hypothetical protein	NA	B1NI80	Stenotrophomonas_phage	47.7	3.7e-75
WP_033837639.1|2635391_2635595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051176288.1|2635901_2636192_-	hypothetical protein	NA	Q4LAU1	Stenotrophomonas_phage	46.7	7.5e-07
WP_033837640.1|2636188_2637163_-	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	61.0	9.6e-115
WP_157733692.1|2637292_2637460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095689868.1|2637586_2638066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033837634.1|2638058_2638385_+	hypothetical protein	NA	S0F2N2	Stenotrophomonas_phage	43.0	4.2e-14
WP_033837635.1|2638419_2639574_-	zonular occludens toxin	NA	B1NI81	Stenotrophomonas_phage	63.0	1.2e-137
WP_033837636.1|2639575_2639866_-	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_152527015.1|2639865_2641257_-	hypothetical protein	NA	B1NI80	Stenotrophomonas_phage	47.7	3.7e-75
WP_033837639.1|2641374_2641578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051176288.1|2641884_2642175_-	hypothetical protein	NA	Q4LAU1	Stenotrophomonas_phage	46.7	7.5e-07
WP_033837640.1|2642171_2643146_-	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	61.0	9.6e-115
>prophage 5
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	2808878	2880455	5029617	transposase,tRNA,integrase	Tupanvirus(33.33%)	36	2824657:2824716	2872576:2873771
WP_005915362.1|2808878_2810324_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	27.5	4.4e-39
WP_005922609.1|2810431_2811193_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033479714.1|2811508_2812252_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA	NA
WP_005915357.1|2812352_2813657_-	threonine synthase	NA	NA	NA	NA	NA
WP_005915355.1|2813818_2814133_+	EthD family reductase	NA	NA	NA	NA	NA
WP_078566167.1|2814207_2815176_-	homoserine kinase	NA	NA	NA	NA	NA
WP_005915351.1|2815217_2817725_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA	NA
WP_157733695.1|2817818_2817968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082335458.1|2818893_2819610_-	S-layer family protein	NA	NA	NA	NA	NA
WP_078514811.1|2820166_2820403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005918353.1|2820419_2820800_-	TNT domain-containing protein	NA	NA	NA	NA	NA
2824657:2824716	attL	GGGTAATCCCCCCGCCCATTAGCAGACGCCAGAAGTGGAATTTTCTCGTACCCTTTCCCG	NA	NA	NA	NA
WP_089504397.1|2824726_2825813_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005916837.1|2838981_2840682_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_005916834.1|2841417_2843376_+	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_005916820.1|2843357_2845256_+	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_005916817.1|2845259_2846513_+	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_005916814.1|2846509_2846956_+	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA	NA
WP_005916811.1|2847590_2849048_+|integrase	site-specific integrase	integrase	A0A0A0YR56	Pseudomonas_phage	24.8	3.9e-11
WP_069288199.1|2849276_2849831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481971.1|2850059_2855675_-	DUF3320 domain-containing protein	NA	NA	NA	NA	NA
WP_005916803.1|2855788_2856541_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_033481969.1|2856839_2858483_-	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_005916793.1|2858977_2860792_+	MchC protein	NA	NA	NA	NA	NA
WP_089140893.1|2860908_2861996_-|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005917781.1|2862463_2863528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917783.1|2863585_2864086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080598372.1|2864339_2866913_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_080598373.1|2868282_2870277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917791.1|2870273_2871572_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_089504397.1|2872645_2873732_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_100225295.1|2875105_2875720_+	hypothetical protein	NA	NA	NA	NA	NA
2872576:2873771	attR	GGGTAATCCCCCCGCCCATTAGCAGACGCCAGAAGTGGAATTTTCTCGTACCCTTTCCCGAGGAGGTTCCATGAAGAAGTCCCGCTTTACCGACAGCCAGATCATCGCCGTGCTCAAGCAGGCCCAGGCCGGTGCGCCCGTGCCGGAGCTGTGCCGCGAGCACGGCATCAGCTCGGCCACGTTCTACAAGTGGCGTAGCAAGTTCGGCGGCATGGACGTGTCCATGGTCGCACGCATGAAGGAGTTGGAGGAGGAGAACCGCCGGCTCAAGAAGATGTACGCCGAGGCGCAGCTCAGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCGAGATGGCCCAATCGGCAGTCACGAGCGGGCGCACGAACATCCGCCACGCCTGCCAGACCTTCGCGGTGAGCCAGACCTGCTTCCGCTACCAGGCCAAGGCCAGCGAGCAGAACGCCCGGATCGCCGACTGGCTGGTCCGCCTGACGACCGCCCATCGCGACTGGGGCTTTGGCCTGTGCTACCTGTACCTGCGCAACGTGAAGGGCTTTGGCTGGAATCACAAGCGGGTCTACCGGATCTACCGCGAGCTGGAGTTGAACCTGCGGATCAAGCCGAAGAAGCGGCTGGTGCGTGAGCGGCCCGAGCCTCTGGCGGTGCCGGAGGCCATCAACCAGGTCTGGTCGATGGACTTCATGCACGACCAGTTGGCCGACGGCCGCAGCTTCCGGCTGTTCAATGTGCTCGACGACTTCAATCGCGAGGGGCTGGGGATCGAGGTGGATCTGTCGCTGCCGTCAGCCCGGGTGATCCGATCGCTGGAGCAGATCATCGAGTGGCGCGGCAAGCCCGCCGTGATCCGCTGCGACAACGGCCCTGAATACATCAGTGGCGCGTTGCTGTCCTGGGCACAGCGGCTTGGCATCCGGGTCGAGCACATCCAGCCGGGCAAGCCACAGCAGAACGCCTACGTTGAACGCTACAACCGCACCATCCGCTACGCCTGGCTCGCCCGCACCCTGTTCGACACCATCGACCAGGTGCAGGACAAAGCCACCCGCTGGCTATGGACGTACAACCACGAGCGCCCGAATATGGCGCTCGGCGGCATCACGCCTGCCATGAAGTTGGCGATGGCCGCTTAGCTCCACTTCTGGCGACCGCTAGAAGTGGGGGGATTACC	NA	NA	NA	NA
WP_089504397.1|2875829_2876917_-|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005918561.1|2877002_2877392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005918563.1|2877441_2878755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155270882.1|2878768_2879272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089504421.1|2879353_2880455_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.6	9.1e-45
>prophage 6
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	2962921	2973699	5029617	tRNA	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
WP_033479136.1|2962921_2964880_-	PAS domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.8	9.6e-13
WP_003481884.1|2966179_2966392_-	carbon storage regulator CsrA	NA	J7I430	Pseudomonas_phage	76.5	1.3e-13
WP_005915037.1|2966531_2969180_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	40.0	4.3e-85
WP_003481873.1|2969281_2969770_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_003481871.1|2970088_2971123_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	61.3	5.1e-114
WP_005915033.1|2971295_2971937_-	transcriptional repressor LexA	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
WP_005915030.1|2972022_2973699_-	2-polyprenylphenol 6-hydroxylase	NA	G8DDN0	Micromonas_pusilla_virus	29.4	1.9e-41
>prophage 7
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	3743140	3780322	5029617	transposase,protease,integrase	Leptospira_phage(28.57%)	32	3752467:3752482	3785086:3785101
WP_003483788.1|3743140_3744427_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.9	5.3e-137
WP_002806026.1|3744552_3745179_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.4	1.0e-56
WP_005913863.1|3745271_3746564_-	trigger factor	NA	NA	NA	NA	NA
WP_005913860.1|3747098_3748367_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_125825507.1|3748585_3748780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005913859.1|3748982_3749972_-	chemotaxis protein CheB	NA	NA	NA	NA	NA
WP_089504397.1|3750318_3751405_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_089504421.1|3751641_3752744_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.6	9.1e-45
3752467:3752482	attL	ACGCGCCGGTGCGCTC	NA	NA	NA	NA
WP_087942126.1|3753322_3754479_-|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005917827.1|3754662_3755055_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005917824.1|3755326_3755551_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_005917821.1|3755557_3756544_+	patatin-like phospholipase family protein	NA	A0A1B2LRS3	Wolbachia_phage	27.9	1.8e-23
WP_005917818.1|3756553_3757690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917815.1|3757686_3759321_+	UBA/THIF-type NAD/FAD-binding protein	NA	NA	NA	NA	NA
WP_033482039.1|3759308_3759785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007971690.1|3760389_3761223_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_033482037.1|3761225_3761972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917807.1|3761968_3763627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095689870.1|3765532_3766634_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	1.2e-44
WP_100225287.1|3766834_3766912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080598327.1|3766975_3769087_-	DNA cytosine methyltransferase	NA	K4HZD0	Acidithiobacillus_phage	25.6	3.2e-14
WP_005914556.1|3770365_3771433_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_005914555.1|3771525_3771759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914554.1|3771896_3772571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914552.1|3772674_3773313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914550.1|3774893_3775388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080598326.1|3775428_3776205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914548.1|3777207_3777432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914547.1|3777605_3778001_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_125825509.1|3778266_3778470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_125825510.1|3778470_3778968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481756.1|3778996_3780322_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3785086:3785101	attR	GAGCGCACCGGCGCGT	NA	NA	NA	NA
>prophage 8
NZ_CP023159	Xanthomonas citri pv. malvacearum strain MS14003 chromosome, complete genome	5029617	4158200	4169969	5029617		Enterobacteria_phage(37.5%)	11	NA	NA
WP_005913455.1|4158200_4159547_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	27.1	7.5e-33
WP_005913454.1|4159592_4160996_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.0	1.1e-47
WP_005913453.1|4161278_4162445_-	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	58.1	4.7e-116
WP_005913452.1|4162784_4163684_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.2	3.1e-27
WP_005913451.1|4163680_4164238_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.9	1.1e-43
WP_005913450.1|4164234_4165122_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.5	8.5e-94
WP_005913448.1|4165173_4166229_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	47.1	1.4e-82
WP_005913446.1|4166449_4167196_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_005913442.1|4167195_4168140_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_005920793.1|4168303_4169032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005913435.1|4169012_4169969_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	27.1	1.8e-25
