assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002288565.1_ASM228856v1	NZ_CP023155	Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome	1	43079-43433	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	CNTGGAAACGGTCAACGGC,TGGAAACGGTCAACGGC,TGGAAACGGTCAATGGCAGCATC	19,17,23	0	0	NA	NA	NA:NA:NA	6,3,5	6	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA,NA|179aa|down_6|NZ_CP023155.1_52918_53455_+,NA|361aa|down_7|NZ_CP023155.1_53481_54564_+	NA|404aa|up_9|NZ_CP023155.1_27899_29111_-	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|267aa|up_8|NZ_CP023155.1_30647_31448_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|347aa|up_7|NZ_CP023155.1_31447_32488_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|162aa|up_6|NZ_CP023155.1_33996_34482_+	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|150aa|up_5|NZ_CP023155.1_34482_34932_+	pfam08808, RES, RES domain	NA|465aa|up_4|NZ_CP023155.1_34955_36350_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|231aa|up_3|NZ_CP023155.1_37750_38443_+	pfam01694, Rhomboid, Rhomboid family	NA|107aa|up_2|NZ_CP023155.1_38551_38872_+	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|509aa|up_1|NZ_CP023155.1_39986_41513_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|412aa|up_0|NZ_CP023155.1_41617_42853_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|599aa|down_0|NZ_CP023155.1_43847_45644_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|148aa|down_1|NZ_CP023155.1_45955_46399_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|378aa|down_2|NZ_CP023155.1_46693_47827_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|351aa|down_3|NZ_CP023155.1_48465_49518_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|358aa|down_4|NZ_CP023155.1_50285_51359_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|353aa|down_5|NZ_CP023155.1_51666_52725_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|179aa|down_6|NZ_CP023155.1_52918_53455_+	NA	NA|361aa|down_7|NZ_CP023155.1_53481_54564_+	NA	NA|494aa|down_8|NZ_CP023155.1_54576_56058_-	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|1491aa|down_9|NZ_CP023155.1_56189_60662_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional
GCF_002288565.1_ASM228856v1	NZ_CP023155	Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome	2	356438-356520	2	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	GGTCTCCAACAGCGGCACCATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA|183aa|up_8|NZ_CP023155.1_339911_340460_+,NA|154aa|up_1|NZ_CP023155.1_353776_354238_+,NA|190aa|down_4|NZ_CP023155.1_369677_370247_-,NA|239aa|down_5|NZ_CP023155.1_370243_370960_-	NA|656aa|up_9|NZ_CP023155.1_337947_339915_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|183aa|up_8|NZ_CP023155.1_339911_340460_+	NA	NA|439aa|up_7|NZ_CP023155.1_340746_342063_+	TIGR03354, VI_FHA, type VI secretion system FHA domain protein	NA|445aa|up_6|NZ_CP023155.1_342642_343977_+	TIGR03353, VI_chp_4, type VI secretion protein, VC_A0114 family	NA|427aa|up_5|NZ_CP023155.1_343958_345239_+	PRK07033, PRK07033, DotU family type VI secretion system protein	NA|192aa|up_4|NZ_CP023155.1_348767_349343_+	TIGR03373, VI_minor_4, type VI secretion-associated protein, BMA_A0400 family	NA|239aa|up_3|NZ_CP023155.1_349339_350056_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|1240aa|up_2|NZ_CP023155.1_350060_353780_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|154aa|up_1|NZ_CP023155.1_353776_354238_+	NA	NA|559aa|up_0|NZ_CP023155.1_354234_355911_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|348aa|down_0|NZ_CP023155.1_363099_364143_+	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family	NA|97aa|down_1|NZ_CP023155.1_364452_364743_-	pfam11191, DUF2782, Protein of unknown function (DUF2782)	NA|935aa|down_2|NZ_CP023155.1_364819_367624_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|300aa|down_3|NZ_CP023155.1_368494_369394_-	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|190aa|down_4|NZ_CP023155.1_369677_370247_-	NA	NA|239aa|down_5|NZ_CP023155.1_370243_370960_-	NA	NA|790aa|down_6|NZ_CP023155.1_371353_373723_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|436aa|down_7|NZ_CP023155.1_374336_375644_+	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|298aa|down_8|NZ_CP023155.1_376236_377130_-	TIGR04444, hypothetical_protein_ThecoDRAFT_3161, chorismatase, FkbO/Hyg5 family	NA|450aa|down_9|NZ_CP023155.1_377240_378590_-	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS
GCF_002288565.1_ASM228856v1	NZ_CP023155	Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome	3	2948853-2948947	3	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	CTGGCCGAAATGGATGCCGACCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA|335aa|up_9|NZ_CP023155.1_2934134_2935139_-,NA|266aa|up_8|NZ_CP023155.1_2935083_2935881_-,NA|178aa|down_4|NZ_CP023155.1_2955206_2955740_+,NA|76aa|down_5|NZ_CP023155.1_2955806_2956034_-	NA|335aa|up_9|NZ_CP023155.1_2934134_2935139_-	NA	NA|266aa|up_8|NZ_CP023155.1_2935083_2935881_-	NA	NA|233aa|up_7|NZ_CP023155.1_2935873_2936572_-	pfam14022, DUF4238, Protein of unknown function (DUF4238)	NA|363aa|up_6|NZ_CP023155.1_2936633_2937721_-	pfam00665, rve, Integrase core domain	NA|210aa|up_5|NZ_CP023155.1_2938864_2939494_-	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|364aa|up_4|NZ_CP023155.1_2939616_2940708_-	pfam13614, AAA_31, AAA domain	NA|1014aa|up_3|NZ_CP023155.1_2941408_2944450_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|247aa|up_2|NZ_CP023155.1_2945768_2946509_+	PRK09109, motC, flagellar motor protein; Reviewed	NA|325aa|up_1|NZ_CP023155.1_2946515_2947490_+	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|261aa|up_0|NZ_CP023155.1_2947491_2948274_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|103aa|down_0|NZ_CP023155.1_2949647_2949956_+	pfam13466, STAS_2, STAS domain	NA|122aa|down_1|NZ_CP023155.1_2949952_2950318_+	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|669aa|down_2|NZ_CP023155.1_2950351_2952358_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|764aa|down_3|NZ_CP023155.1_2952596_2954888_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|178aa|down_4|NZ_CP023155.1_2955206_2955740_+	NA	NA|76aa|down_5|NZ_CP023155.1_2955806_2956034_-	NA	NA|726aa|down_6|NZ_CP023155.1_2956270_2958448_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|912aa|down_7|NZ_CP023155.1_2958573_2961309_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|254aa|down_8|NZ_CP023155.1_2961606_2962368_+	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|791aa|down_9|NZ_CP023155.1_2962381_2964754_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_002288565.1_ASM228856v1	NZ_CP023155	Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome	4	3376104-3376242	4	CRISPRCasFinder	no	DEDDh,csa3	cas3,DinG,WYL,DEDDh,csa3	Type I-A	ATTTCCGAGGTGCCCTCGTAGATTTCGGTGATCTTTGCATCGCGG	45	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA,NA	NA|290aa|up_9|NZ_CP023155.1_3361956_3362826_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|277aa|up_8|NZ_CP023155.1_3362848_3363679_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|237aa|up_7|NZ_CP023155.1_3363807_3364518_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|136aa|up_6|NZ_CP023155.1_3364627_3365035_+	COG5455, COG5455, Predicted integral membrane protein [Function unknown]	DEDDh|214aa|up_5|NZ_CP023155.1_3365294_3365936_+	PRK05168, PRK05168, ribonuclease T; Provisional	NA|1012aa|up_4|NZ_CP023155.1_3366182_3369218_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|250aa|up_3|NZ_CP023155.1_3369481_3370231_-	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA|158aa|up_2|NZ_CP023155.1_3370542_3371016_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|843aa|up_1|NZ_CP023155.1_3371296_3373825_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|482aa|up_0|NZ_CP023155.1_3374349_3375795_-	cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases	NA|383aa|down_0|NZ_CP023155.1_3376578_3377727_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|332aa|down_1|NZ_CP023155.1_3377848_3378844_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|380aa|down_2|NZ_CP023155.1_3378840_3379980_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|918aa|down_3|NZ_CP023155.1_3380605_3383359_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|402aa|down_4|NZ_CP023155.1_3383499_3384705_-	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]	NA|353aa|down_5|NZ_CP023155.1_3384701_3385760_-	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|437aa|down_6|NZ_CP023155.1_3385684_3386995_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|392aa|down_7|NZ_CP023155.1_3387008_3388184_-	cd06289, PBP1_MalI-like, ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria	NA|282aa|down_8|NZ_CP023155.1_3388324_3389170_-	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|251aa|down_9|NZ_CP023155.1_3389497_3390250_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002288565.1_ASM228856v1	NZ_CP023155	Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome	5	4949943-4950127	5	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	GTGCAGGTGCGCCCCTCGGCCGAGCA	26	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA,NA|206aa|down_2|NZ_CP023155.1_4952475_4953093_-,NA|249aa|down_3|NZ_CP023155.1_4953195_4953942_-	NA|558aa|up_9|NZ_CP023155.1_4937535_4939209_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|215aa|up_8|NZ_CP023155.1_4939205_4939850_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_7|NZ_CP023155.1_4940043_4941147_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|53aa|up_6|NZ_CP023155.1_4941732_4941891_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|up_5|NZ_CP023155.1_4941955_4942966_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|554aa|up_4|NZ_CP023155.1_4943196_4944858_-	PRK09274, PRK09274, peptide synthase; Provisional	NA|128aa|up_3|NZ_CP023155.1_4945180_4945564_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|301aa|up_2|NZ_CP023155.1_4945716_4946619_-	PRK00870, PRK00870, haloalkane dehalogenase; Provisional	NA|339aa|up_1|NZ_CP023155.1_4948015_4949032_-	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|107aa|up_0|NZ_CP023155.1_4949133_4949454_-	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|159aa|down_0|NZ_CP023155.1_4950328_4950805_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|410aa|down_1|NZ_CP023155.1_4951153_4952383_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|206aa|down_2|NZ_CP023155.1_4952475_4953093_-	NA	NA|249aa|down_3|NZ_CP023155.1_4953195_4953942_-	NA	NA|449aa|down_4|NZ_CP023155.1_4954132_4955479_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|481aa|down_5|NZ_CP023155.1_4955463_4956906_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|576aa|down_6|NZ_CP023155.1_4956955_4958683_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|199aa|down_7|NZ_CP023155.1_4959040_4959637_+	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|342aa|down_8|NZ_CP023155.1_4960101_4961127_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|171aa|down_9|NZ_CP023155.1_4961142_4961655_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated
GCF_002288565.1_ASM228856v1	NZ_CP023155	Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome	6	5223165-5223240	6	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	CGCGGCCAGGGCCGCTCCTACAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA|133aa|up_9|NZ_CP023155.1_5200235_5200634_-,NA|157aa|up_8|NZ_CP023155.1_5200910_5201381_+,NA|111aa|up_3|NZ_CP023155.1_5212762_5213095_+,NA|33aa|up_2|NZ_CP023155.1_5215358_5215457_+,NA|80aa|down_1|NZ_CP023155.1_5227444_5227684_-,NA|127aa|down_8|NZ_CP023155.1_5232306_5232687_-	NA|133aa|up_9|NZ_CP023155.1_5200235_5200634_-	NA	NA|157aa|up_8|NZ_CP023155.1_5200910_5201381_+	NA	NA|299aa|up_7|NZ_CP023155.1_5201856_5202753_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|526aa|up_6|NZ_CP023155.1_5203089_5204667_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|1216aa|up_5|NZ_CP023155.1_5205516_5209164_-	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|600aa|up_4|NZ_CP023155.1_5209247_5211047_-	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|111aa|up_3|NZ_CP023155.1_5212762_5213095_+	NA	NA|33aa|up_2|NZ_CP023155.1_5215358_5215457_+	NA	NA|465aa|up_1|NZ_CP023155.1_5215559_5216954_-	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases	NA|731aa|up_0|NZ_CP023155.1_5217522_5219715_-	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit	NA|1135aa|down_0|NZ_CP023155.1_5223490_5226895_-	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|80aa|down_1|NZ_CP023155.1_5227444_5227684_-	NA	NA|265aa|down_2|NZ_CP023155.1_5228066_5228861_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|250aa|down_3|NZ_CP023155.1_5228860_5229610_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|182aa|down_4|NZ_CP023155.1_5229621_5230167_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|221aa|down_5|NZ_CP023155.1_5230163_5230826_+	pfam05494, MlaC, MlaC protein	NA|97aa|down_6|NZ_CP023155.1_5230815_5231106_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|352aa|down_7|NZ_CP023155.1_5231116_5232172_+	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|127aa|down_8|NZ_CP023155.1_5232306_5232687_-	NA	NA|182aa|down_9|NZ_CP023155.1_5232690_5233236_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate
