assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002287945.1_ASM228794v1	NZ_CP006804	Lactobacillus rhamnosus DSM 14870 chromosome, complete genome	1	41360-41474	1	CRISPRCasFinder	no		DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	CTTACATTCTAGCTTACGCCCATAACGC	28	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|151aa|up_2|NZ_CP006804.1_39780_40233_+,NA|100aa|up_1|NZ_CP006804.1_40255_40555_+,NA	NA|221aa|up_9|NZ_CP006804.1_31000_31663_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|224aa|up_8|NZ_CP006804.1_31708_32380_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|822aa|up_7|NZ_CP006804.1_32366_34832_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|406aa|up_6|NZ_CP006804.1_34837_36055_+	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|317aa|up_5|NZ_CP006804.1_36183_37134_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|561aa|up_4|NZ_CP006804.1_37385_39068_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|71aa|up_3|NZ_CP006804.1_39072_39285_-	PRK13667, PRK13667, hypothetical protein; Provisional	NA|151aa|up_2|NZ_CP006804.1_39780_40233_+	NA	NA|100aa|up_1|NZ_CP006804.1_40255_40555_+	NA	NA|185aa|up_0|NZ_CP006804.1_40596_41151_-	PRK00150, def, peptide deformylase; Reviewed	NA|272aa|down_0|NZ_CP006804.1_42032_42848_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|371aa|down_1|NZ_CP006804.1_43108_44221_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|326aa|down_2|NZ_CP006804.1_44223_45201_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|547aa|down_3|NZ_CP006804.1_45218_46859_+	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|468aa|down_4|NZ_CP006804.1_46861_48265_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|297aa|down_5|NZ_CP006804.1_48508_49399_+	TIGR01771, L-lactate_dehydrogenase, L-lactate dehydrogenase	NA|94aa|down_6|NZ_CP006804.1_49388_49670_+	pfam05256, UPF0223, Uncharacterized protein family (UPF0223)	NA|265aa|down_7|NZ_CP006804.1_49672_50467_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|615aa|down_8|NZ_CP006804.1_50719_52564_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|390aa|down_9|NZ_CP006804.1_52810_53980_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW
GCF_002287945.1_ASM228794v1	NZ_CP006804	Lactobacillus rhamnosus DSM 14870 chromosome, complete genome	2	306504-306625	2	CRISPRCasFinder	no		DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	GATGCTGCTGCGAAAACGCGCTTACAGTCGCAGCAATCTCC	41	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA,NA|108aa|down_7|NZ_CP006804.1_315283_315607_-	NA|153aa|up_9|NZ_CP006804.1_296742_297201_-	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|329aa|up_8|NZ_CP006804.1_297204_298191_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|145aa|up_7|NZ_CP006804.1_298757_299192_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|up_6|NZ_CP006804.1_299219_299396_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|277aa|up_5|NZ_CP006804.1_299668_300499_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|296aa|up_4|NZ_CP006804.1_300495_301383_-	PRK01060, PRK01060, endonuclease IV; Provisional	NA|307aa|up_3|NZ_CP006804.1_301530_302451_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|149aa|up_2|NZ_CP006804.1_302755_303202_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|602aa|up_1|NZ_CP006804.1_303287_305093_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|428aa|up_0|NZ_CP006804.1_305094_306378_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|503aa|down_0|NZ_CP006804.1_307016_308525_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|292aa|down_1|NZ_CP006804.1_308521_309397_-	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|149aa|down_2|NZ_CP006804.1_309596_310043_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|441aa|down_3|NZ_CP006804.1_310130_311453_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|209aa|down_4|NZ_CP006804.1_311554_312181_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|149aa|down_5|NZ_CP006804.1_312180_312627_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|742aa|down_6|NZ_CP006804.1_312753_314979_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|108aa|down_7|NZ_CP006804.1_315283_315607_-	NA	NA|243aa|down_8|NZ_CP006804.1_315644_316373_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|315aa|down_9|NZ_CP006804.1_316411_317356_-	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase
GCF_002287945.1_ASM228794v1	NZ_CP006804	Lactobacillus rhamnosus DSM 14870 chromosome, complete genome	3	603267-603412	3	CRISPRCasFinder	no		DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	GGCCTTAAACGTGATGGCCCGGGTTTGGTCATTGCGTTTAAGGT	44	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|146aa|up_1|NZ_CP006804.1_599865_600303_-,NA	NA|278aa|up_9|NZ_CP006804.1_592278_593112_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|390aa|up_8|NZ_CP006804.1_593208_594378_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|202aa|up_7|NZ_CP006804.1_594482_595088_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|up_6|NZ_CP006804.1_595683_596148_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_5|NZ_CP006804.1_596144_596597_-	PRK04351, PRK04351, SprT family protein	NA|251aa|up_4|NZ_CP006804.1_596844_597597_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|up_3|NZ_CP006804.1_597589_598489_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|up_2|NZ_CP006804.1_598485_599481_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|up_1|NZ_CP006804.1_599865_600303_-	NA	NA|888aa|up_0|NZ_CP006804.1_600360_603024_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|387aa|down_0|NZ_CP006804.1_603537_604698_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_1|NZ_CP006804.1_604809_605637_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|399aa|down_2|NZ_CP006804.1_605636_606833_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|down_3|NZ_CP006804.1_606846_608310_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|down_4|NZ_CP006804.1_608810_609512_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|down_5|NZ_CP006804.1_609537_610683_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|down_6|NZ_CP006804.1_610780_611578_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|662aa|down_7|NZ_CP006804.1_611580_613566_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|2176aa|down_8|NZ_CP006804.1_613822_620350_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|499aa|down_9|NZ_CP006804.1_621108_622605_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain
GCF_002287945.1_ASM228794v1	NZ_CP006804	Lactobacillus rhamnosus DSM 14870 chromosome, complete genome	4	992959-995240	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Type II-A,Type II-C,Type II-B	GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	34,34,24	34	TypeII-A,TypeII-C,TypeII-B	DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|367aa|up_1|NZ_CP006804.1_991113_992214_-,NA	NA|215aa|up_9|NZ_CP006804.1_980272_980917_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|262aa|up_8|NZ_CP006804.1_980982_981768_-	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|483aa|up_7|NZ_CP006804.1_982227_983676_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|612aa|up_6|NZ_CP006804.1_983694_985530_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|291aa|up_5|NZ_CP006804.1_985978_986851_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|541aa|up_4|NZ_CP006804.1_986982_988605_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|565aa|up_3|NZ_CP006804.1_988597_990292_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_2|NZ_CP006804.1_990503_990929_-	pfam07009, NusG_II, NusG domain II	NA|367aa|up_1|NZ_CP006804.1_991113_992214_-	NA	NA|163aa|up_0|NZ_CP006804.1_992421_992910_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	csn2|227aa|down_0|NZ_CP006804.1_995260_995941_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP006804.1_995937_996243_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP006804.1_996220_997126_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1362aa|down_3|NZ_CP006804.1_997317_1001403_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|576aa|down_4|NZ_CP006804.1_1001697_1003425_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_5|NZ_CP006804.1_1003405_1005148_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_6|NZ_CP006804.1_1005144_1006158_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|down_7|NZ_CP006804.1_1006154_1007579_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|435aa|down_8|NZ_CP006804.1_1007810_1009115_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|340aa|down_9|NZ_CP006804.1_1009215_1010235_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively
GCF_002287945.1_ASM228794v1	NZ_CP006804	Lactobacillus rhamnosus DSM 14870 chromosome, complete genome	5	2869431-2869574	5	CRISPRCasFinder	no		DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	Orphan	AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG	43	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,Cas14u_CAS-V,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	NA|70aa|up_8|NZ_CP006804.1_2857602_2857812_-,NA|209aa|up_5|NZ_CP006804.1_2860603_2861230_+,NA|215aa|down_2|NZ_CP006804.1_2873362_2874007_-,NA|81aa|down_5|NZ_CP006804.1_2876025_2876268_+	NA|78aa|up_9|NZ_CP006804.1_2857353_2857587_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|70aa|up_8|NZ_CP006804.1_2857602_2857812_-	NA	NA|358aa|up_7|NZ_CP006804.1_2858148_2859222_+	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|307aa|up_6|NZ_CP006804.1_2859424_2860345_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|209aa|up_5|NZ_CP006804.1_2860603_2861230_+	NA	NA|298aa|up_4|NZ_CP006804.1_2861301_2862195_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|179aa|up_3|NZ_CP006804.1_2862146_2862683_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|489aa|up_2|NZ_CP006804.1_2862785_2864252_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|612aa|up_1|NZ_CP006804.1_2864266_2866102_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|883aa|up_0|NZ_CP006804.1_2866552_2869201_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|233aa|down_0|NZ_CP006804.1_2871555_2872254_+	pfam02661, Fic, Fic/DOC family	NA|310aa|down_1|NZ_CP006804.1_2872366_2873296_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|215aa|down_2|NZ_CP006804.1_2873362_2874007_-	NA	NA|322aa|down_3|NZ_CP006804.1_2874313_2875279_+	pfam06081, ArAE_1, Aromatic acid exporter family member 1	NA|67aa|down_4|NZ_CP006804.1_2875605_2875806_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|81aa|down_5|NZ_CP006804.1_2876025_2876268_+	NA	NA|161aa|down_6|NZ_CP006804.1_2876509_2876992_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|212aa|down_7|NZ_CP006804.1_2876997_2877633_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|193aa|down_8|NZ_CP006804.1_2877823_2878402_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|443aa|down_9|NZ_CP006804.1_2878410_2879739_+	TIGR03173, pbuX, xanthine permease
