assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002287605.1_ASM228760v1	NZ_CP023151	Mycobacterium chimaera strain FLAC0070 chromosome, complete genome	1	607217-607294	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	GCTCTGCATCGTCGCGGCGCGAGTCA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA|178aa|up_8|NZ_CP023151.1_598703_599237_-,NA|247aa|down_7|NZ_CP023151.1_615766_616507_-	NA|298aa|up_9|NZ_CP023151.1_597805_598699_+	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	NA|178aa|up_8|NZ_CP023151.1_598703_599237_-	NA	NA|365aa|up_7|NZ_CP023151.1_599289_600384_-	cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase	NA|395aa|up_6|NZ_CP023151.1_600542_601727_+	cd01159, NcnH, Naphthocyclinone hydroxylase	NA|291aa|up_5|NZ_CP023151.1_601780_602653_+	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|301aa|up_4|NZ_CP023151.1_602652_603555_+	TIGR03213, Biphenyl-23-diol_12-dioxygenase_1, 2,3-dihydroxybiphenyl 1,2-dioxygenase	NA|188aa|up_3|NZ_CP023151.1_603557_604121_+	pfam01613, Flavin_Reduct, Flavin reductase like domain	NA|277aa|up_2|NZ_CP023151.1_604235_605066_+	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|389aa|up_1|NZ_CP023151.1_605077_606244_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|317aa|up_0|NZ_CP023151.1_606240_607191_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|382aa|down_0|NZ_CP023151.1_608232_609378_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|515aa|down_1|NZ_CP023151.1_609377_610922_-	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|383aa|down_2|NZ_CP023151.1_610981_612130_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|263aa|down_3|NZ_CP023151.1_612126_612915_+	PRK07831, PRK07831, SDR family oxidoreductase	NA|201aa|down_4|NZ_CP023151.1_612962_613565_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|387aa|down_5|NZ_CP023151.1_613566_614727_+	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|303aa|down_6|NZ_CP023151.1_614836_615745_+	pfam18741, MTES_1575, REase_MTES_1575	NA|247aa|down_7|NZ_CP023151.1_615766_616507_-	NA	NA|216aa|down_8|NZ_CP023151.1_616503_617151_-	pfam16264, SatD, SatD family (SatD)	NA|358aa|down_9|NZ_CP023151.1_617211_618285_-	pfam03060, NMO, Nitronate monooxygenase
GCF_002287605.1_ASM228760v1	NZ_CP023151	Mycobacterium chimaera strain FLAC0070 chromosome, complete genome	2	1424849-1424931	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	CGCCCGGCGGCGCCGCGCTCGCGATCGGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA,NA|224aa|down_1|NZ_CP023151.1_1426752_1427424_+	NA|380aa|up_9|NZ_CP023151.1_1411133_1412273_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|194aa|up_8|NZ_CP023151.1_1412390_1412972_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|410aa|up_7|NZ_CP023151.1_1412971_1414201_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|456aa|up_6|NZ_CP023151.1_1414327_1415695_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|279aa|up_5|NZ_CP023151.1_1415760_1416597_+	cd10031, UDG-F5_TTUDGB_like, Uracil DNA glycosylase family 5, includes Thermotoga maritima TTUDGB and similar proteins	NA|377aa|up_4|NZ_CP023151.1_1416593_1417724_+	PRK05868, PRK05868, FAD-binding protein	NA|344aa|up_3|NZ_CP023151.1_1417771_1418803_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|1289aa|up_2|NZ_CP023151.1_1418810_1422677_-	cd01948, EAL, EAL domain	NA|145aa|up_1|NZ_CP023151.1_1422897_1423332_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|463aa|up_0|NZ_CP023151.1_1423415_1424804_+	PRK12470, PRK12470, amidase; Provisional	NA|389aa|down_0|NZ_CP023151.1_1425405_1426572_+	pfam16701, Ad_Cy_reg, Adenylate cyclase regulatory domain	NA|224aa|down_1|NZ_CP023151.1_1426752_1427424_+	NA	NA|589aa|down_2|NZ_CP023151.1_1427467_1429234_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|639aa|down_3|NZ_CP023151.1_1429412_1431329_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|589aa|down_4|NZ_CP023151.1_1431325_1433092_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|down_5|NZ_CP023151.1_1433273_1433831_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|down_6|NZ_CP023151.1_1433839_1434370_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|down_7|NZ_CP023151.1_1434464_1434968_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|down_8|NZ_CP023151.1_1435131_1436283_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|down_9|NZ_CP023151.1_1436279_1438901_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]
GCF_002287605.1_ASM228760v1	NZ_CP023151	Mycobacterium chimaera strain FLAC0070 chromosome, complete genome	3	2252146-2252259	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	GGTGTGATCGCGGCTTCGCCGCTCAACA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA,NA|182aa|down_3|NZ_CP023151.1_2257431_2257977_-,NA|70aa|down_4|NZ_CP023151.1_2258049_2258259_+,NA|493aa|down_5|NZ_CP023151.1_2258411_2259890_-,NA|193aa|down_6|NZ_CP023151.1_2259886_2260465_-	NA|493aa|up_9|NZ_CP023151.1_2243241_2244720_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|321aa|up_8|NZ_CP023151.1_2244719_2245682_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|386aa|up_7|NZ_CP023151.1_2245949_2247107_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|249aa|up_6|NZ_CP023151.1_2247158_2247905_+	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|259aa|up_5|NZ_CP023151.1_2247910_2248687_+	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|215aa|up_4|NZ_CP023151.1_2248753_2249398_+	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|up_3|NZ_CP023151.1_2249563_2249854_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|266aa|up_2|NZ_CP023151.1_2250116_2250914_+	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|113aa|up_1|NZ_CP023151.1_2251006_2251345_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|225aa|up_0|NZ_CP023151.1_2251348_2252023_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|507aa|down_0|NZ_CP023151.1_2252655_2254176_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|271aa|down_1|NZ_CP023151.1_2254795_2255608_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|518aa|down_2|NZ_CP023151.1_2255604_2257158_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|182aa|down_3|NZ_CP023151.1_2257431_2257977_-	NA	NA|70aa|down_4|NZ_CP023151.1_2258049_2258259_+	NA	NA|493aa|down_5|NZ_CP023151.1_2258411_2259890_-	NA	NA|193aa|down_6|NZ_CP023151.1_2259886_2260465_-	NA	NA|162aa|down_7|NZ_CP023151.1_2260464_2260950_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|145aa|down_8|NZ_CP023151.1_2261344_2261779_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|83aa|down_9|NZ_CP023151.1_2261782_2262031_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
GCF_002287605.1_ASM228760v1	NZ_CP023151	Mycobacterium chimaera strain FLAC0070 chromosome, complete genome	4	5235078-5235163	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	ATCGTGCAGTCCGGCGACGGCGAGCGCCG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA|74aa|up_3|NZ_CP023151.1_5227117_5227339_+,NA	NA|541aa|up_9|NZ_CP023151.1_5221075_5222698_+	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)	NA|258aa|up_8|NZ_CP023151.1_5222699_5223473_+	cd05233, SDR_c, classical (c) SDRs	NA|510aa|up_7|NZ_CP023151.1_5223457_5224987_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|381aa|up_6|NZ_CP023151.1_5225001_5226144_+	TIGR03989, Zn-dependent_alcohol_dehydrogenase_class_III, NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family	NA|166aa|up_5|NZ_CP023151.1_5226121_5226619_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|127aa|up_4|NZ_CP023151.1_5226693_5227074_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|74aa|up_3|NZ_CP023151.1_5227117_5227339_+	NA	NA|245aa|up_2|NZ_CP023151.1_5227432_5228167_-	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|256aa|up_1|NZ_CP023151.1_5228196_5228964_-	cd05233, SDR_c, classical (c) SDRs	NA|318aa|up_0|NZ_CP023151.1_5229120_5230074_+	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|524aa|down_0|NZ_CP023151.1_5235198_5236770_-	PRK13383, PRK13383, acyl-CoA synthetase; Provisional	NA|302aa|down_1|NZ_CP023151.1_5236759_5237665_-	PRK07201, PRK07201, SDR family oxidoreductase	NA|248aa|down_2|NZ_CP023151.1_5237964_5238708_+	pfam01083, Cutinase, Cutinase	NA|255aa|down_3|NZ_CP023151.1_5238791_5239556_-	COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]	NA|325aa|down_4|NZ_CP023151.1_5239702_5240677_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|202aa|down_5|NZ_CP023151.1_5240863_5241469_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|462aa|down_6|NZ_CP023151.1_5241509_5242895_+	cd07302, CHD, cyclase homology domain	NA|249aa|down_7|NZ_CP023151.1_5242992_5243739_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|151aa|down_8|NZ_CP023151.1_5243756_5244209_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|232aa|down_9|NZ_CP023151.1_5244267_5244963_-	PRK08264, PRK08264, SDR family oxidoreductase
GCF_002287605.1_ASM228760v1	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	1	135428-135532	1	CRISPRCasFinder	no	c2c4_V-U1	csa3,c2c4_V-U1,c2c9_V-U4	Type V-U1	GCCCAGCGATCCGGGCCGAAAGGATCGAC	29	0	0	NA	NA	NA	1	1	TypeV-U1	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA|350aa|up_8|NZ_CP023152.1_121542_122592_+,NA|216aa|up_7|NZ_CP023152.1_123016_123664_-,NA|343aa|up_6|NZ_CP023152.1_124748_125777_+,NA|46aa|up_5|NZ_CP023152.1_125802_125940_+,NA|93aa|up_3|NZ_CP023152.1_129478_129757_+,NA|422aa|down_2|NZ_CP023152.1_137925_139191_+,NA|227aa|down_9|NZ_CP023152.1_147143_147824_+	NA|84aa|up_9|NZ_CP023152.1_121092_121344_-	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional	NA|350aa|up_8|NZ_CP023152.1_121542_122592_+	NA	NA|216aa|up_7|NZ_CP023152.1_123016_123664_-	NA	NA|343aa|up_6|NZ_CP023152.1_124748_125777_+	NA	NA|46aa|up_5|NZ_CP023152.1_125802_125940_+	NA	NA|719aa|up_4|NZ_CP023152.1_126531_128688_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|93aa|up_3|NZ_CP023152.1_129478_129757_+	NA	NA|196aa|up_2|NZ_CP023152.1_132294_132882_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|211aa|up_1|NZ_CP023152.1_132878_133511_+	pfam08808, RES, RES domain	c2c4_V-U1|585aa|up_0|NZ_CP023152.1_133624_135379_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|588aa|down_0|NZ_CP023152.1_135662_137426_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|146aa|down_1|NZ_CP023152.1_137477_137915_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|422aa|down_2|NZ_CP023152.1_137925_139191_+	NA	NA|226aa|down_3|NZ_CP023152.1_139544_140222_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|569aa|down_4|NZ_CP023152.1_140313_142020_-	PRK06126, PRK06126, hypothetical protein; Provisional	NA|366aa|down_5|NZ_CP023152.1_142057_143155_-	PRK06256, PRK06256, biotin synthase; Validated	NA|243aa|down_6|NZ_CP023152.1_143396_144125_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|497aa|down_7|NZ_CP023152.1_144027_145518_+	PRK06834, PRK06834, hypothetical protein; Provisional	NA|374aa|down_8|NZ_CP023152.1_145722_146844_+	pfam02311, AraC_binding, AraC-like ligand binding domain	NA|227aa|down_9|NZ_CP023152.1_147143_147824_+	NA
