The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	27282	70036	4106367	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	77634	136108	4106367	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	164893	301501	4106367	transposase,tRNA,protease	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211222_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219052_221896_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225620_226316_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226332_227745_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227857_229288_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229329_231243_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231561_232128_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232218_233220_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236367_237165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240333_241377_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241547_243650_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267752_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_162096757.1|278848_279106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280423_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287020_287647_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287669_288596_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288604_290191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290187_291192_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291391_292252_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292283_293285_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293355_294165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294242_296102_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296230_297433_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297546_298428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299930_300491_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300550_301501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	390855	448364	4106367	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	589369	650561	4106367	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589369_590320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590795_591686_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591682_592504_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619570_619735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622979_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638047_639400_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646243_647116_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	655885	702076	4106367	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680887_681109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690807_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	708242	762172	4106367	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760691_761099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	853050	913926	4106367	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853050_854001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854018_854573_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854574_855009_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855005_855440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855423_856227_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856243_857059_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857055_857871_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858017_858719_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858746_860705_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860787_861738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861958_862627_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862750_863857_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863869_866983_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866979_868473_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868487_869159_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869202_869697_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869837_870485_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870588_872637_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872633_874646_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874671_876006_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876114_877107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877173_879258_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879282_880254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880382_881414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881417_882569_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882739_883663_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883740_884565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906807_907014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	934673	1000573	4106367	transposase	Bacillus_virus(15.38%)	59	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953781_954756_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954880_955792_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956068_956461_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956590_957541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957570_957753_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958525_959707_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959922_960600_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960596_961322_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961447_962029_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962399_965081_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965083_966214_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966206_967292_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967378_968278_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968274_969603_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969617_970289_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970476_972192_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972193_972553_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972744_973059_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973101_974322_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974318_975260_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975256_976246_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976280_976865_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976963_977914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977994_978906_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978966_980112_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980131_981046_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981117_981867_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981866_982796_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983039_984866_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984948_985590_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985779_986814_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988650_989715_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990512_991421_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992908_994183_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994336_994717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994724_995597_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995902_996283_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996493_997219_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1024377	1082462	4106367	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036190_1036832_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047528_1048266_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048701_1049025_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049059_1049620_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049740_1050616_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050628_1051576_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051677_1051971_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051997_1054055_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054069_1054570_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054643_1056350_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057213_1058266_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058318_1058708_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058716_1059349_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063939_1064827_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070163_1071099_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071148_1073029_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073095_1073440_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081511_1082462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1086508	1236202	4106367	holin,transposase,tRNA	Planktothrix_phage(12.5%)	113	NA	NA
WP_003819794.1|1086508_1086922_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086923_1087283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087325_1088870_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088953_1089784_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089818_1090973_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091015_1091888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092004_1094293_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095499_1095964_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095990_1096941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096958_1097096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097308_1098085_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098129_1098987_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099008_1100025_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100159_1101200_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101394_1103476_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103711_1105205_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105435_1106230_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106450_1107809_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107805_1108648_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108666_1110553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110494_1110746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110790_1111423_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111441_1112044_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112195_1113146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113726_1114434_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114792_1115779_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115918_1116932_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116928_1117879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117896_1118037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117991_1118450_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118486_1119800_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119817_1120189_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120185_1121649_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121789_1122518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122499_1125349_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125561_1126512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126679_1127504_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127503_1128382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129286_1130402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130430_1131225_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131221_1133087_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133165_1133798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133794_1134097_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134139_1135660_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135666_1136422_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136451_1137556_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137658_1139359_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139340_1140318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140327_1141608_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141600_1142296_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142329_1143157_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143438_1146669_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147404_1151331_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153230_1155027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158627_1159260_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159424_1161707_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161861_1164558_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164683_1165172_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167582_1170453_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170498_1171713_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171942_1173370_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173467_1174559_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174571_1175330_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175417_1176320_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176316_1177267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177396_1178380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178434_1179157_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180635_1181991_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182071_1184447_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184611_1186687_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186748_1187543_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187650_1188613_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188600_1189356_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189463_1191101_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191168_1191906_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192008_1192584_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192756_1193293_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193325_1193640_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193655_1194501_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194539_1195919_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195996_1196878_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196976_1197927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197923_1198334_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198441_1199296_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199288_1200251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200296_1201421_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201526_1202405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202529_1203309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203462_1204884_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205318_1207016_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207242_1208184_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208510_1209257_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209264_1210191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210312_1211230_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211269_1212223_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212247_1212826_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214499_1215108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215185_1215539_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215622_1216612_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216608_1216797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216814_1217765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218798_1219749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220009_1221038_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221117_1222416_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222412_1222994_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223306_1227353_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227593_1235255_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235251_1236202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1270677	1327886	4106367	transposase	Klosneuvirus(16.67%)	51	NA	NA
WP_010931070.1|1270677_1271628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275374_1275986_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276208_1277669_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277765_1279358_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279711_1279969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279970_1281311_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281406_1282096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282108_1283539_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285263_1286085_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286095_1287667_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287695_1288673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288699_1289503_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289499_1290294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290301_1291537_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291550_1291964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1292274_1292592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1292713_1293664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294285_1296013_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296124_1297483_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297539_1297758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297775_1298726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298766_1299837_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299859_1300738_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300909_1301881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302043_1302886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303047_1303728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303721_1304891_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304887_1305919_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305986_1307204_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307238_1308771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308851_1309475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309505_1310117_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310152_1310623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1310812_1311046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1311053_1312058_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312094_1313609_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313612_1314572_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314600_1315404_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315405_1317040_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317123_1318185_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318383_1318653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318656_1319181_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319595_1320546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320542_1321577_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321685_1322324_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322618_1322846_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322968_1323682_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323926_1324877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325016_1325262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325376_1326825_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326935_1327886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1418119	1470271	4106367	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418119_1419070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419087_1419240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419236_1419590_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419602_1419965_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420006_1420432_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420634_1421891_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422089_1423070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423219_1424461_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424559_1425510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425518_1426214_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429034_1429634_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429644_1431810_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431833_1433618_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433617_1433707_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434401_1434674_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434673_1436740_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436736_1437687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437785_1438736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438851_1439184_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439180_1439867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439853_1440813_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440845_1443215_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443214_1443847_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443948_1445289_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445335_1446691_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446981_1447218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447405_1447723_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447995_1448511_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448781_1449537_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449875_1450082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450089_1450749_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451043_1453248_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453358_1454582_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454704_1455679_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455746_1456940_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456954_1457755_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457751_1459608_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459604_1460210_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460228_1461614_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462339_1463566_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463654_1464437_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464535_1465486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465512_1466286_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466297_1467539_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469320_1470271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1514196	1582282	4106367	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514196_1514685_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514802_1515381_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515486_1515855_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515953_1516904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516910_1518023_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518709_1519912_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520115_1522776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522788_1526193_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526860_1529086_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529132_1529459_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529509_1530118_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530216_1531167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531236_1532001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531997_1532534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532700_1533552_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533611_1534238_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534234_1535185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535283_1536396_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536385_1537387_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537492_1539004_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539000_1540305_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540416_1540977_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541244_1541799_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542254_1542470_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542724_1545322_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545318_1546506_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547164_1547779_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547867_1548989_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549006_1549912_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550804_1551755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551936_1552689_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552757_1553417_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553413_1554142_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554154_1556434_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556458_1556662_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556703_1557336_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557471_1558389_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558385_1559099_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559336_1560107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560111_1560711_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560955_1562446_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562504_1562789_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563354_1564281_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564417_1565158_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565324_1566701_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566882_1567788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569439_1571242_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571359_1572010_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572108_1573059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573080_1574301_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574486_1575899_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575962_1577030_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577029_1578517_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578526_1579471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579630_1580329_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580406_1581312_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581331_1582282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1618231	1673822	4106367	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618231_1619182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619240_1620014_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620006_1621563_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621559_1622510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623836_1624439_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624678_1625380_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625373_1626156_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626340_1627291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627389_1628127_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628316_1629075_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629121_1630111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630288_1631257_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632796_1633765_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633773_1634715_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635188_1636199_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636189_1637704_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637700_1639047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639049_1640084_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640133_1641759_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642311_1643262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643366_1644314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644367_1646182_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646174_1646849_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646978_1650053_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650066_1650366_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650680_1651304_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651547_1652417_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652394_1653339_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653424_1654351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654463_1655243_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655233_1656430_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656460_1657411_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657632_1658322_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658386_1659142_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659193_1660186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660195_1661149_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661264_1662227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663628_1664057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664053_1665004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665297_1666020_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666458_1667646_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667649_1668000_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669749_1670721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670734_1671448_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671452_1672370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672476_1672773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672871_1673822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	1831588	1963697	4106367	transposase,tRNA,protease	Klosneuvirus(18.75%)	120	NA	NA
WP_005013747.1|1831588_1832539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832663_1833473_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833673_1834624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835897_1837115_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838171_1839074_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839150_1840023_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840153_1840522_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840579_1841626_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841821_1843078_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843082_1844420_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844569_1845526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845628_1846561_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846676_1846997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846989_1847349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847396_1848971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849023_1849968_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849985_1850816_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850808_1852443_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852439_1853795_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854701_1856279_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856282_1857557_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857654_1858029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859744_1860878_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860915_1861521_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861517_1862336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862407_1865032_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865018_1865273_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865339_1865921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866224_1866485_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866650_1867274_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867273_1868047_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868043_1869252_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869277_1869751_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869824_1870775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871921_1873271_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874036_1874792_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874884_1877767_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878089_1878515_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878542_1879691_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879687_1880194_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880209_1881496_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881545_1882841_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882842_1883481_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883486_1884644_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884670_1886026_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886029_1887100_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887238_1887475_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887562_1888669_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888634_1889939_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889957_1890857_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1891040_1892198_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1892274_1893570_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1893683_1894223_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1894500_1894713_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1894732_1896763_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1896788_1896983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1897448_1899731_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1900140_1900440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1900724_1901138_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1901097_1902048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902146_1903097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903296_1904382_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904397_1905159_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905155_1906079_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906177_1906702_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906710_1907454_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907549_1907789_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907802_1907955_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908040_1909531_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909622_1910561_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910557_1910734_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910736_1911399_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913020_1913164_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913160_1914135_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914029_1914284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914301_1915252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915248_1916523_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916626_1917820_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917816_1918470_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918466_1919903_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919890_1920250_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921064_1921205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921222_1922173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923218_1925084_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925341_1926862_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926949_1927600_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928548_1929844_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929865_1930750_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930848_1931724_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931713_1932070_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932200_1933175_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933304_1933484_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933581_1934106_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934116_1934953_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935065_1935437_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935433_1935985_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936000_1937692_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937740_1938421_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938668_1939133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939302_1940232_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940244_1940892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940965_1942783_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942866_1943817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944469_1945420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1945438_1945786_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1945814_1947254_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1947272_1947668_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1947842_1948451_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1948463_1949282_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1949233_1950208_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1950236_1951298_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1951294_1953511_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1953524_1953983_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1954140_1954485_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1954641_1955547_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1955633_1956647_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1958626_1959643_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1959785_1961138_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1961312_1961609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1962746_1963697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2171088	2228366	4106367	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171088_2172039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172137_2174132_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174191_2175157_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175146_2178008_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178010_2178517_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178621_2179830_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179831_2180770_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180931_2181405_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181401_2182352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182462_2182903_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183031_2184261_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184299_2185121_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185174_2186326_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186417_2186906_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189456_2192006_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192076_2194650_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194915_2195116_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195147_2195309_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195366_2195705_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195853_2196804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197577_2198246_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198227_2200183_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200425_2201175_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201187_2202051_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202054_2203470_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203603_2204332_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204470_2204671_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204846_2205245_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205268_2206669_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206787_2207540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207828_2208506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208532_2209312_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209308_2210193_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210210_2210990_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210974_2211733_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211870_2212506_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930525.1|2212773_2213790_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213887_2214928_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215062_2216355_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217714_2218098_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218115_2218703_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218740_2219691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219789_2220350_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220346_2220892_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221087_2222116_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222156_2223497_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223605_2224610_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224716_2227317_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227415_2228366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2474947	2533191	4106367	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2474947_2475898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476377_2477034_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477048_2478716_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478718_2479348_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479559_2480654_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480798_2481611_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2481614_2483198_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2483368_2484499_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484685_2485762_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485843_2486494_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486508_2487912_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488195_2489014_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2489010_2489715_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490614_2491730_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491763_2492138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492160_2493318_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493330_2493564_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494198_2497168_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497182_2497392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497543_2498173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2498169_2500227_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500283_2500964_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500960_2501521_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501527_2502625_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502777_2503371_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503367_2504660_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504673_2505216_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505225_2506062_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506095_2507157_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507198_2508251_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508266_2508569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508710_2509661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2509678_2509843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2509839_2511534_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511530_2512616_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512663_2513563_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513573_2514218_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515239_2518482_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518492_2519647_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519873_2520836_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520934_2521885_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521983_2522934_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522943_2523633_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523692_2524130_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524175_2525069_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525116_2526289_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526285_2527440_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2527636_2527987_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527976_2528411_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528427_2529378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529525_2529993_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529973_2531131_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531196_2532123_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532240_2533191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2575469	2641969	4106367	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575469_2576420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576789_2577362_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577364_2578375_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578367_2578868_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578878_2579220_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579288_2580023_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580039_2580309_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580331_2581120_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581166_2582183_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582399_2583842_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584020_2585640_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585760_2587581_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587659_2589192_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589225_2590872_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590941_2591964_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591981_2593115_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593117_2593807_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593806_2594592_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594635_2595400_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595438_2596860_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596925_2597630_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597677_2598097_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598109_2598517_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598700_2599411_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599537_2599828_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599845_2600328_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604833_2605988_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606293_2607310_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607556_2608345_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608411_2609092_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609088_2609859_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609957_2610908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610963_2611881_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611891_2613070_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613089_2614085_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615673_2616282_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616269_2617310_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617327_2618290_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618286_2619480_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619476_2620274_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620299_2621286_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621304_2623344_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623545_2624226_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624239_2625151_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625147_2625726_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625864_2626770_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626777_2630197_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630184_2632785_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633740_2634373_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634766_2635525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635521_2636724_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636911_2637862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638769_2639915_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639901_2640657_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640773_2640953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641018_2641969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2670084	2707496	4106367	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670084_2671035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671133_2672084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672176_2672716_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672822_2673167_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673224_2674673_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674860_2675196_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676823_2678002_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678084_2678585_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678694_2679396_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679407_2679872_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679886_2680162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680158_2680935_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680963_2681791_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681916_2682387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682513_2683407_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683454_2684636_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684648_2685464_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685597_2686125_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686121_2686619_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686766_2687144_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687365_2688316_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688414_2689026_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689260_2690388_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690498_2691587_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691639_2692491_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692510_2693392_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693568_2694882_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695092_2695926_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695922_2696504_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696857_2697808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697823_2698939_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699041_2699968_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699967_2701206_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701202_2701970_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701970_2702672_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702753_2703200_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704089_2704728_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705496_2706447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706545_2707496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2806623	2861140	4106367	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_076879566.1|2806623_2807574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807902_2808508_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808561_2809875_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809949_2810420_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810419_2811208_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811218_2812871_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812958_2813909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815070_2815577_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815573_2816338_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816353_2816638_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816702_2817692_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817863_2818793_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818764_2819451_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819484_2820030_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820074_2821340_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821336_2822239_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823420_2824365_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824459_2825977_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826018_2827647_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827754_2828636_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831748_2832123_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832147_2832486_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832529_2834164_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834202_2835549_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835656_2837078_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837147_2837732_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837834_2838785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838919_2840026_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840036_2841134_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841278_2842484_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842490_2843012_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843008_2843491_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843496_2843748_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843728_2844214_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844349_2847811_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847828_2848713_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848722_2849154_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849400_2849904_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849981_2851382_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851456_2852332_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852328_2853336_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853803_2854109_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854199_2854790_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854980_2855997_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856188_2858525_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858607_2859042_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859140_2860091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860189_2861140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2869165	2925951	4106367	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869165_2870116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871822_2872089_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872796_2873135_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877688_2878291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878387_2879677_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879734_2880466_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880462_2881266_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881262_2882351_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882347_2883277_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883425_2884571_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884592_2885543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885560_2885719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885873_2889695_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889851_2890520_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890524_2892198_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892216_2893536_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893540_2895856_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895911_2898080_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898076_2903257_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903355_2903670_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903897_2904143_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904237_2904756_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904855_2906061_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906176_2907574_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907690_2908269_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908341_2909733_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909900_2910851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911131_2911752_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911748_2912162_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912158_2913202_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913257_2913446_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913455_2914220_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914310_2914967_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915058_2915817_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915842_2917444_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917644_2918649_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918749_2919013_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919130_2919907_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920497_2921448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923831_2924944_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925000_2925951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	2956337	3000028	4106367	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956337_2957288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957305_2957455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957408_2958305_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960582_2962808_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962972_2964061_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964017_2964671_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964718_2965516_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966047_2966998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967078_2968227_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968283_2969234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969332_2969638_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969666_2970101_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970102_2971347_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971343_2972054_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972068_2972980_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973342_2973747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973743_2974202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974208_2975117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975113_2975980_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975966_2976794_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976804_2977932_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979009_2980248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980289_2981552_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981558_2982311_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982362_2982548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982823_2983288_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983319_2983979_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984123_2986232_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986228_2987179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987282_2987903_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988006_2988747_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989881_2991006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991051_2991420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991661_2992612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993647_2994190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994387_2994558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994575_2995526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995522_2996431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996557_2997394_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997906_2999016_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999077_3000028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	3381021	3434762	4106367	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381021_3381972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382376_3383021_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383045_3383630_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383730_3384348_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384350_3386066_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386062_3386371_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386387_3387005_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387049_3387352_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387452_3388307_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388494_3388719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388888_3389161_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389578_3389986_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390355_3391150_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391250_3392486_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392554_3393571_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393582_3394959_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394955_3396152_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396148_3397687_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397683_3398943_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400883_3401834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402600_3403695_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403687_3405022_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404975_3405659_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405684_3406848_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406844_3407846_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407845_3408718_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408714_3409464_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409460_3410252_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410248_3411388_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411663_3412449_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412482_3413265_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413268_3413658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414797_3415661_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415696_3416785_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416781_3417732_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418085_3421064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421990_3422869_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424817_3425768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425764_3426232_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426274_3427045_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427065_3427866_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427876_3429286_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429380_3430166_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430405_3431422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431529_3431922_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432059_3432740_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432744_3433716_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433811_3434762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	3440917	3500215	4106367	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440917_3442681_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442792_3443671_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443783_3444599_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444602_3444854_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444938_3445955_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446285_3446507_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448867_3449785_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450282_3451491_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451570_3453142_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453259_3454195_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454383_3455328_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455895_3461613_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461618_3462746_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462801_3463428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463699_3464716_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464811_3465522_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465518_3466508_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466603_3468235_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468237_3468975_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469130_3470003_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470352_3471492_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471488_3472148_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472219_3472852_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472881_3473400_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473410_3474520_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474566_3475421_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475422_3476325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477547_3478498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480252_3481242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481417_3482206_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482202_3483234_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483252_3483816_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483871_3485392_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485655_3486360_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486367_3487096_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487210_3487585_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487627_3488917_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488913_3490083_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490079_3490919_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490978_3491914_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491926_3492877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492975_3493938_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493969_3494329_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494453_3495356_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495357_3497130_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497164_3497941_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499264_3500215_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017122	Bordetella pertussis strain J154 chromosome, complete genome	4106367	3515153	3573226	4106367	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515153_3516104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516232_3517366_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517409_3518315_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518317_3520018_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520014_3520935_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520942_3521920_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521978_3523013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524987_3525224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525350_3526214_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526302_3527124_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527203_3527941_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527937_3528930_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529082_3529706_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529750_3530899_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533222_3534173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534513_3535464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535562_3536513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536809_3537307_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537349_3539125_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539132_3539999_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540005_3540740_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541909_3542704_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542993_3543584_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543617_3544946_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545020_3546166_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546277_3547276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547238_3547673_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549189_3550074_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550070_3551276_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551272_3552133_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552245_3554036_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554076_3554721_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554742_3555051_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555216_3556503_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557936_3558887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560838_3562053_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562158_3563148_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563144_3563753_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563765_3564395_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564391_3565012_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565043_3565835_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566686_3567142_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567160_3568087_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568140_3569427_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570357_3571230_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571226_3572177_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572275_3573226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
