assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002286255.1_ASM228625v1	NZ_CP017064	Streptococcus thermophilus strain ST3, complete genome	1	652775-653929	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	Type II-C,Type II-A,Type II-B	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACA	36,36,34	0	0	NA	NA	NA:NA:NA	17,17,6	17	TypeII-C,TypeII-A,TypeII-B	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	NA,NA	NA|477aa|up_9|NZ_CP017064.1_636486_637917_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|305aa|up_8|NZ_CP017064.1_639373_640288_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|355aa|up_7|NZ_CP017064.1_640304_641369_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|183aa|up_6|NZ_CP017064.1_641408_641957_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|454aa|up_5|NZ_CP017064.1_642172_643534_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|205aa|up_4|NZ_CP017064.1_646015_646630_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NZ_CP017064.1_646884_650250_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NZ_CP017064.1_650426_651338_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NZ_CP017064.1_651339_651663_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NZ_CP017064.1_651659_652712_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NZ_CP017064.1_653970_654786_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|300aa|down_1|NZ_CP017064.1_654785_655685_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NZ_CP017064.1_656048_658181_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NZ_CP017064.1_658167_658608_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NZ_CP017064.1_658673_658937_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NZ_CP017064.1_659067_659997_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NZ_CP017064.1_659996_660788_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NZ_CP017064.1_660910_661309_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NZ_CP017064.1_661321_661762_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NZ_CP017064.1_661782_662079_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_002286255.1_ASM228625v1	NZ_CP017064	Streptococcus thermophilus strain ST3, complete genome	2	784183-784330	2	CRISPRCasFinder	no		cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	Orphan	CTCAGAAAGTCCCGTAGCCGAGGAGTTGGTTGACACTTCTGTGGAGGCTACC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	NA|100aa|up_4|NZ_CP017064.1_775601_775901_+,NA|108aa|up_3|NZ_CP017064.1_775978_776302_+,NA	NA|573aa|up_9|NZ_CP017064.1_769264_770983_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|191aa|up_8|NZ_CP017064.1_771065_771638_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|182aa|up_7|NZ_CP017064.1_771665_772211_-	PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated	NA|228aa|up_6|NZ_CP017064.1_772203_772887_-	PRK06732, PRK06732, phosphopantothenate--cysteine ligase; Validated	NA|557aa|up_5|NZ_CP017064.1_773080_774751_+	PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional	NA|100aa|up_4|NZ_CP017064.1_775601_775901_+	NA	NA|108aa|up_3|NZ_CP017064.1_775978_776302_+	NA	NA|524aa|up_2|NZ_CP017064.1_777123_778694_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|357aa|up_1|NZ_CP017064.1_780454_781525_+	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|513aa|up_0|NZ_CP017064.1_781642_783181_+	cd01031, EriC, ClC chloride channel EriC	NA|435aa|down_0|NZ_CP017064.1_790683_791988_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|79aa|down_1|NZ_CP017064.1_792084_792321_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|307aa|down_2|NZ_CP017064.1_792389_793310_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|197aa|down_3|NZ_CP017064.1_793634_794225_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|61aa|down_4|NZ_CP017064.1_794240_794423_+	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|79aa|down_5|NZ_CP017064.1_794438_794675_+	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|267aa|down_6|NZ_CP017064.1_794655_795456_+	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|357aa|down_7|NZ_CP017064.1_796630_797701_+	COG1744, Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]	NA|513aa|down_8|NZ_CP017064.1_797814_799353_+	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|356aa|down_9|NZ_CP017064.1_799345_800413_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]
GCF_002286255.1_ASM228625v1	NZ_CP017064	Streptococcus thermophilus strain ST3, complete genome	3	914332-914585	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,csm6	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	Type III-A	GATATAAACCTAATTACCTCGAGAGGGGACGGAAACTG,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAACTGA	38,36,39	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	3,3,3	3	TypeIII-A	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	NA|73aa|up_8|NZ_CP017064.1_908845_909064_+,NA|72aa|up_4|NZ_CP017064.1_910805_911021_-,NA|74aa|down_2|NZ_CP017064.1_918869_919091_+,NA|128aa|down_4|NZ_CP017064.1_919391_919775_+,NA|78aa|down_6|NZ_CP017064.1_920446_920680_+,NA|86aa|down_7|NZ_CP017064.1_920869_921127_+,NA|103aa|down_8|NZ_CP017064.1_921126_921435_+,NA|60aa|down_9|NZ_CP017064.1_921809_921989_+	NA|64aa|up_9|NZ_CP017064.1_908217_908409_+	COG4405, COG4405, Uncharacterized protein conserved in bacteria [Function unknown]	NA|73aa|up_8|NZ_CP017064.1_908845_909064_+	NA	NA|223aa|up_7|NZ_CP017064.1_909265_909934_+	pfam05857, TraX, TraX protein	NA|70aa|up_6|NZ_CP017064.1_909949_910159_+	pfam05857, TraX, TraX protein	NA|183aa|up_5|NZ_CP017064.1_910200_910749_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|72aa|up_4|NZ_CP017064.1_910805_911021_-	NA	NA|268aa|up_3|NZ_CP017064.1_910989_911793_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_CP017064.1_911811_912759_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|NZ_CP017064.1_912897_913902_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_CP017064.1_913901_914231_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|465aa|down_0|NZ_CP017064.1_915041_916436_-	TIGR01000, Mesentericin_Y105_secretion_protein_MesE, bacteriocin secretion accessory protein	NA|716aa|down_1|NZ_CP017064.1_916447_918595_-	TIGR01193, transport/processing_ATP-binding_protein, ABC-type bacteriocin transporter	NA|74aa|down_2|NZ_CP017064.1_918869_919091_+	NA	NA|76aa|down_3|NZ_CP017064.1_919142_919370_+	pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide	NA|128aa|down_4|NZ_CP017064.1_919391_919775_+	NA	NA|101aa|down_5|NZ_CP017064.1_919986_920289_+	pfam08951, EntA_Immun, Enterocin A Immunity	NA|78aa|down_6|NZ_CP017064.1_920446_920680_+	NA	NA|86aa|down_7|NZ_CP017064.1_920869_921127_+	NA	NA|103aa|down_8|NZ_CP017064.1_921126_921435_+	NA	NA|60aa|down_9|NZ_CP017064.1_921809_921989_+	NA
GCF_002286255.1_ASM228625v1	NZ_CP017064	Streptococcus thermophilus strain ST3, complete genome	4	1399223-1400777	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	Type II-C,Type II-A,Type II-B	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	23,23,23	23	TypeII-C,TypeII-A,TypeII-B	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,csm6	NA|66aa|up_7|NZ_CP017064.1_1392933_1393131_-,NA|148aa|up_4|NZ_CP017064.1_1396015_1396459_-,NA|80aa|up_0|NZ_CP017064.1_1398899_1399139_-,NA	NA|737aa|up_9|NZ_CP017064.1_1389910_1392121_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|NZ_CP017064.1_1392120_1392861_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|NZ_CP017064.1_1392933_1393131_-	NA	NA|438aa|up_6|NZ_CP017064.1_1393297_1394611_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|NZ_CP017064.1_1394704_1394833_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|NZ_CP017064.1_1396015_1396459_-	NA	NA|128aa|up_3|NZ_CP017064.1_1396489_1396873_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NZ_CP017064.1_1397561_1397804_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NZ_CP017064.1_1397971_1398862_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NZ_CP017064.1_1398899_1399139_-	NA	csn2|220aa|down_0|NZ_CP017064.1_1401098_1401758_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP017064.1_1401747_1402092_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP017064.1_1402088_1402958_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NZ_CP017064.1_1402957_1407124_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NZ_CP017064.1_1407457_1408105_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NZ_CP017064.1_1408216_1409941_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NZ_CP017064.1_1410037_1411990_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|202aa|down_7|NZ_CP017064.1_1411990_1412596_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NZ_CP017064.1_1412636_1413332_-	pfam04172, LrgB, LrgB-like family	NA|125aa|down_9|NZ_CP017064.1_1413324_1413699_-	pfam03788, LrgA, LrgA family
