The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	0	70036	4106392	tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929591.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	77634	123122	4106392	tRNA,transposase	Planktothrix_phage(25.0%)	44	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	165940	226451	4106392	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|165940_166891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168334_169237_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169214_169844_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|170174_171557_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|171590_172220_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172268_173876_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173900_174584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174665_175142_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|175182_175362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|175348_176299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177414_177942_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178033_178849_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178909_179644_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179681_181760_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182009_182282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|182380_183469_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183472_185377_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185373_189048_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189108_189672_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189679_190102_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190129_190549_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190577_191024_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191150_191648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191802_194073_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194121_195354_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195452_196403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|196448_197141_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|197137_198031_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198425_199526_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199607_199982_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200041_202906_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203050_203791_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203860_205072_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205100_206069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206682_207633_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207789_208113_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|208217_209267_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|209263_210088_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210088_210385_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210410_210686_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210742_211387_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211386_212073_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212202_213054_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213104_213830_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213861_215211_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215322_216255_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216712_219508_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220101_223044_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223115_223835_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223873_224422_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224576_225476_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225500_226451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	234383	287971	4106392	protease,tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|234383_235334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235420_236371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236367_237318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|237304_237478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|237416_238214_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239163_239574_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240595_241339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241382_242426_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242596_244699_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246109_247066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247084_247576_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247572_248928_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248928_249627_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249623_250325_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250577_251627_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251732_252674_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252670_254560_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254646_255285_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255427_256813_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256743_257280_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257431_258823_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258839_259820_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259955_260939_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261003_261903_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262009_263764_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263771_264896_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264909_265890_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266620_267571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268130_268676_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268759_270379_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270394_271549_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271562_271688_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271684_273436_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273432_275112_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|275147_275723_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|276865_277144_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278187_279138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279124_279340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279415_279577_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279584_279725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280243_280693_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280702_281314_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|281472_282327_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282346_283729_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283793_284435_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284574_285033_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285057_285834_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285887_287024_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287020_287971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	556356	615656	4106392	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|556356_557307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558630_559407_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559441_561214_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561215_562118_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562242_562602_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562633_563596_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563694_564645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564657_565593_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565652_566492_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566488_567658_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567654_568944_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568986_569361_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|569466_570204_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570211_570916_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571179_572700_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572755_573319_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573337_574369_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574365_575154_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575329_576319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578075_579026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580248_581151_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581152_582007_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582053_583163_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583173_583692_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583721_584354_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584425_585085_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|585081_586302_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586570_587443_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587598_588336_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852728.1|588338_589934_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590065_591055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591051_591762_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591857_592874_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593145_593772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593827_594955_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594960_600678_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|600961_601177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|601245_602190_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602378_603314_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603431_605003_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605082_606291_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606788_607706_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610066_610288_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610618_611635_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611719_611971_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611974_612790_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612902_613781_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613892_615656_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	621811	675552	4106392	transposase	Salmonella_phage(33.33%)	50	NA	NA
WP_010930179.1|621811_622762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|622830_623829_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623833_624514_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624651_625044_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625151_626168_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626407_627193_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627287_628697_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628707_629508_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629528_630299_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630341_630809_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630805_631756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633704_634583_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635509_638488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|638441_638855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638841_639792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639788_640877_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640912_641776_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642915_643305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643308_644091_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|644124_644877_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645185_646325_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646321_647113_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647109_647859_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647855_648728_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648727_649729_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649725_650889_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650914_651598_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651551_652886_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652878_653973_+	CoA transferase	NA	NA	NA	NA	NA
WP_153302791.1|654576_654753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|654739_655690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657630_658890_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658886_660425_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660421_661618_-	MFS transporter	NA	NA	NA	NA	NA
WP_029443830.1|661614_663006_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663002_664019_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664087_665323_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665423_666218_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666587_666995_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667412_667685_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667854_668079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668266_669121_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669221_669524_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_015040527.1|669550_670186_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670202_670511_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670507_672223_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672225_672843_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672943_673528_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673552_674197_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674601_675552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	724439	756248	4106392	protease,integrase,tRNA,transposase	Pseudomonas_phage(33.33%)	22	721738:721756	741626:741644
721738:721756	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_029443720.1|724439_725087_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725083_725866_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725938_727030_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727309_728437_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728778_729825_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729972_733092_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733093_736045_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736060_737272_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737268_737469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737455_738406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738422_738917_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738920_739178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853401.1|739202_740633_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|740714_740999_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741782_742733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741626:741644	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743151_745716_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745760_747614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747946_749518_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750959_751910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751995_752736_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752962_753910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755297_756248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	1006200	1100237	4106392	transposase	Bacillus_virus(27.27%)	88	NA	NA
WP_005012067.1|1006200_1007151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007253_1007916_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008010_1008181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008533_1009535_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009537_1010734_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010754_1011558_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011638_1011935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011965_1012529_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012569_1013427_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013434_1014184_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014205_1015078_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015106_1015886_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015919_1016717_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|1018168_1019341_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|1019371_1019764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019757_1020618_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020621_1021584_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022360_1023050_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023910_1024861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025210_1026080_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026150_1026846_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026835_1027345_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027341_1028562_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028509_1029412_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030298_1031585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031623_1032997_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033035_1033737_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034035_1035025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035125_1035587_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035602_1036151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036292_1037768_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037873_1038965_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038968_1039751_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039760_1040549_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041674_1042109_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042105_1043116_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043159_1044086_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044372_1044741_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044957_1045908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045952_1048379_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048427_1049120_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049192_1050392_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050409_1051315_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051430_1052360_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052385_1053732_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053759_1054509_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054522_1055305_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055497_1056448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|1056509_1057655_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058131_1058968_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059037_1060003_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1059999_1060950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|1060936_1061143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061335_1061878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062913_1063864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064105_1064474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064519_1065644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066778_1067519_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067622_1068243_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068346_1069297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069293_1071402_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071546_1072206_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072237_1072702_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072977_1073163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073214_1073967_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073973_1075236_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075277_1076516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077593_1078721_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078731_1079559_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079545_1080412_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081778_1082183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082274_1083225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083594_1084506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084520_1085231_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085227_1086472_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086473_1086908_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086936_1087242_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|1087135_1087354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1087340_1088291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088347_1089496_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089576_1090527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091058_1091856_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091903_1092557_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092513_1093602_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093766_1095992_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098269_1099166_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|1099054_1099300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099286_1100237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	1130623	1201593	4106392	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130623_1131574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131630_1132743_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135126_1136077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136667_1137444_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137561_1137825_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137925_1138930_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139130_1140732_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140757_1141516_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141607_1142264_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142354_1143119_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143128_1143317_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143372_1144416_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144412_1144826_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144822_1145443_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145723_1146674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146841_1148233_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148305_1148884_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149000_1150398_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150513_1151719_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151818_1152337_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152431_1152677_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152904_1153219_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153308_1158498_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158494_1160663_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|1160682_1163034_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|1163038_1164358_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164376_1166050_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166054_1166723_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166879_1170701_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171031_1171982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172003_1173149_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173297_1174227_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174223_1175312_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175308_1176112_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176108_1176840_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176897_1178187_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178283_1178886_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183438_1183777_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184484_1184751_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186457_1187408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187404_1188736_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|1189975_1191997_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191989_1192631_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192627_1193035_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193031_1193832_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193906_1194611_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194642_1195437_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195433_1196384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196482_1197433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197531_1197966_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198048_1200385_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200576_1201593_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	1301813	1359024	4106392	transposase	Klosneuvirus(16.67%)	52	NA	NA
WP_010931070.1|1301813_1302764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306510_1307122_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307344_1308805_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308901_1310494_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|1310480_1310759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|1310817_1311105_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311106_1312447_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312542_1313232_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313244_1314675_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316399_1317221_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317231_1318803_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318831_1319809_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319835_1320639_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320635_1321430_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321437_1322673_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322665_1323100_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323849_1324800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325421_1327149_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327260_1328619_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1328739_1328925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1328911_1329862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329902_1330973_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1330995_1331874_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332045_1333017_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333179_1334022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334183_1334864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1334857_1336027_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1336023_1337055_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337098_1338340_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338374_1339907_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339987_1340611_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340641_1341253_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341288_1341759_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342190_1343195_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343231_1344746_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344749_1345709_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345737_1346541_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346542_1348177_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348260_1349322_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349520_1349790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349793_1350318_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1350733_1351684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|1351680_1352751_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352823_1353462_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353756_1353984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354106_1354820_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355064_1356015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|1356001_1356166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|1356118_1356400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356514_1357963_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_153302788.1|1357946_1358087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1358073_1359024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	1449257	1501410	4106392	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1449257_1450208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1450194_1450362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1450374_1450728_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450740_1451103_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451144_1451570_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451772_1453029_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453227_1454208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454357_1455599_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455697_1456648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456656_1457352_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460173_1460773_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460783_1462949_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462972_1464757_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464756_1464846_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465540_1465813_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465812_1467879_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467875_1468826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468924_1469875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469990_1470323_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470319_1471006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470992_1471952_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1471993_1474354_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474353_1474986_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1475048_1476428_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476474_1477830_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1478108_1478357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478544_1478862_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479134_1479650_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479743_1479905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1479920_1480676_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481014_1481221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481228_1481888_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482182_1484387_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484497_1485721_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485843_1486818_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486885_1488079_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488093_1488894_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488890_1490747_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490743_1491349_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491367_1492753_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493478_1494705_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494793_1495576_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495674_1496625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496651_1497425_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497436_1498678_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500459_1501410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	1547092	1613421	4106392	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1547092_1548043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548049_1549162_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549848_1551051_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551254_1553915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553927_1557332_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1557999_1560225_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560271_1560598_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560648_1561257_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561355_1562306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562375_1563140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563136_1563736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1563839_1564685_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564750_1565377_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565373_1566324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1566310_1566499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1566422_1567544_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567524_1568526_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568631_1570143_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570139_1571444_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571555_1572116_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572383_1572938_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573393_1573609_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573863_1576461_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576457_1577645_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578303_1578918_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579006_1580134_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580145_1581051_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1581801_1581957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1581943_1582894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583075_1583828_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583896_1584556_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584552_1585281_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585293_1587573_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587597_1587801_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1587842_1588490_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1588610_1589528_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589524_1590238_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590475_1591246_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591250_1591850_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592094_1593585_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593643_1593928_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1593924_1594053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1594065_1594221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594493_1595420_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595556_1596297_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596463_1597840_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598021_1598927_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600578_1602381_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602498_1603149_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603247_1604198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604219_1605440_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605625_1607038_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607101_1608169_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1608165_1609656_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609665_1610610_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610769_1611468_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611545_1612451_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612470_1613421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	1649370	1704961	4106392	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1649370_1650321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650379_1651153_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651145_1652702_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652698_1653649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1653635_1653791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1654975_1655578_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655817_1656519_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656512_1657295_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657479_1658430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1658416_1658578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1658528_1659266_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659455_1660214_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660260_1661250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661427_1662396_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663935_1664904_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664912_1665854_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666327_1667338_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667328_1668843_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668839_1670186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670188_1671223_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671272_1672898_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673450_1674401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674505_1675453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675506_1677321_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677313_1677988_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678117_1681192_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681205_1681505_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681819_1682443_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682686_1683556_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683533_1684478_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1684563_1685535_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1685602_1686376_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686372_1687569_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687599_1688550_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688771_1689461_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689525_1690281_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690332_1691325_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691334_1692288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692403_1693366_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694767_1695196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695192_1696143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696436_1697159_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697597_1698785_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698788_1699169_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700888_1701860_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701873_1702587_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702591_1703509_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703615_1703912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704010_1704961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2025130	2073145	4106392	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|2025130_2026081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2026179_2028780_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2028886_2029891_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2029999_2031340_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2031380_2032409_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2032604_2033150_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2033146_2033707_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2033805_2034756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2034793_2035381_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2035398_2035782_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2037141_2038434_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2038568_2039609_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2039706_2040723_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2040990_2041638_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2041763_2042522_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|2042596_2043286_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|2043303_2044188_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2044184_2044964_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2044990_2045668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2045956_2046709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2046827_2048228_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2048251_2048650_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2048825_2049026_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2049164_2049893_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2050026_2051442_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2051445_2052309_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2052321_2053071_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2053253_2055269_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|2055250_2055799_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|2055875_2056595_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|2056693_2057644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2057742_2058693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2058841_2059180_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2059237_2059399_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2059430_2059631_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2059896_2062470_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|2062540_2065114_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2067640_2068129_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2068220_2069372_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2069425_2070247_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2070285_2071515_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2071643_2072084_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|2072028_2072208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2072194_2073145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2134707	2193977	4106392	protease,tRNA,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|2134707_2135658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2135782_2136592_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|2136647_2136806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2136792_2137743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2139016_2140234_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2141290_2142193_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2142269_2143142_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2143272_2143641_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2143698_2144745_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2144940_2146197_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2146201_2147539_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2147688_2148645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2148747_2149680_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2149795_2150116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|2150117_2150468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2150515_2152090_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2152142_2153087_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2153104_2153935_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2153927_2155562_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2155558_2156914_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2157820_2159398_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2159401_2160676_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2160773_2161148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2162863_2163997_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2164034_2164640_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2164636_2165455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2165526_2168151_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2168137_2168392_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2168458_2169040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2169343_2169604_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2169769_2170393_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2170392_2171166_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2171162_2172371_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2172396_2172870_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2172943_2173894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2173992_2174943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2175041_2176391_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2177156_2177912_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2178004_2180887_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2181209_2181635_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2181662_2182811_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2182807_2183314_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2183320_2184616_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|2184656_2185961_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2185962_2186601_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2186603_2187764_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2187790_2189146_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2189149_2190220_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2190358_2190595_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2190682_2191789_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2191754_2193059_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2193077_2193977_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2204217	2248540	4106392	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|2204217_2205168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2205266_2206217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|2206203_2206404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|2206416_2207502_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2207517_2208279_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|2208275_2209199_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|2209297_2209822_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2209830_2210574_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2210669_2210909_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2210922_2211075_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2211160_2212651_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2212742_2213681_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2213677_2213854_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2213856_2214519_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2216140_2216284_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2216280_2217255_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|2217291_2217435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2217421_2218372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2218368_2219643_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|2219740_2220940_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2220936_2221590_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2221586_2223023_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2223010_2223370_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2224342_2225293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2226338_2228204_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2228461_2229982_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2230069_2230720_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2231668_2232964_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2232985_2233870_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2233968_2234844_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2234833_2235190_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2235263_2236295_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2236424_2236604_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2236701_2237226_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2237236_2238073_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2238185_2238557_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2238553_2239105_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2239120_2240812_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2240860_2241541_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2241788_2242253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2242422_2243352_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2243364_2244012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2244085_2245903_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2245986_2246937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2247441_2247603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2247589_2248540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2278313	2342682	4106392	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2278313_2279264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2279250_2279442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2279485_2280436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2280534_2281500_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2281637_2282537_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2285131_2286619_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2286629_2287826_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2287898_2289218_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2289214_2290090_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2290120_2291290_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2291286_2291601_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2291622_2292345_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2292344_2293163_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2293167_2293695_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2293700_2294966_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2295315_2296455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2296532_2297405_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2298275_2299226_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2299185_2299821_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2300180_2301503_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2301731_2302643_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2304067_2304640_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2304679_2306509_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2306471_2307530_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2307567_2308029_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2308113_2308860_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2310350_2313581_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2313647_2314979_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2315231_2315606_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2315708_2316887_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2316897_2317488_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2317598_2318405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2318430_2319225_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2320225_2321200_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2321358_2321871_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2322027_2322999_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2324743_2325550_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2325546_2326683_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2326798_2327563_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2327676_2328447_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2328531_2329743_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2329791_2330166_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2330266_2331529_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2331525_2332383_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2332555_2333557_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2334008_2334959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2336474_2337674_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2338042_2338279_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2338342_2338510_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2338623_2340519_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2340682_2341633_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2341731_2342682_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2507143	2565387	4106392	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2507143_2508094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508573_2509230_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509244_2510912_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510914_2511544_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511755_2512850_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512994_2513807_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2513810_2515514_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2515564_2516695_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516881_2517958_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518039_2518690_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|2518704_2520138_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520391_2521210_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2521206_2521911_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522810_2523926_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523959_2524334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524356_2525514_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525526_2525760_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526394_2529364_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529378_2529588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529739_2530369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|2530365_2532483_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|2532479_2533160_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533156_2533717_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533723_2534821_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|2534958_2535567_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535563_2536856_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536869_2537412_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537421_2538258_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538291_2539353_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539394_2540447_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540462_2540765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|2540906_2541857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996304.1|2541843_2542002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2542035_2543730_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543726_2544812_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544859_2545759_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545769_2546414_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547435_2550678_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|2550688_2551786_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|2552048_2553032_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_076879624.1|2553130_2554081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554179_2555130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555139_2555829_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555888_2556326_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556371_2557265_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2557312_2558485_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2558481_2559636_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2559832_2560183_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2560172_2560607_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560623_2561574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561721_2562189_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2562169_2563327_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2563392_2564319_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2564436_2565387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2607667	2674167	4106392	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607667_2608618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608987_2609560_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609562_2610573_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610565_2611066_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611076_2611418_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2611429_2612221_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612237_2612507_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612529_2613318_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613364_2614381_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614597_2616040_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616218_2617838_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617958_2619779_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619857_2621390_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621423_2623070_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623139_2624162_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624179_2625313_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625315_2626005_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2626004_2626790_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626833_2627598_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627636_2629058_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629123_2629828_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629875_2630295_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630307_2630715_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630898_2631609_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631735_2632026_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632043_2632526_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637031_2638186_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638491_2639508_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639754_2640543_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640609_2641290_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641286_2642057_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642155_2643106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643161_2644079_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644089_2645268_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645287_2646283_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647871_2648480_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648467_2649508_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649525_2650488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650484_2651678_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651674_2652472_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652497_2653484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653502_2655542_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655743_2656424_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656437_2657349_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657345_2657924_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658062_2658968_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658975_2662395_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662382_2664983_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665938_2666571_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666964_2667723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667719_2668922_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669109_2670060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670967_2672113_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2672132_2672855_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672971_2673151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673216_2674167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2836732	2902316	4106392	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|2836732_2837683_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2837781_2838732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2838934_2839924_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2840007_2840361_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2840438_2841047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2842720_2843299_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2843323_2844277_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2844316_2845234_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2845355_2846282_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2846289_2847036_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2847362_2848304_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003811651.1|2848379_2848502_-	membrane protein	NA	NA	NA	NA	NA
WP_010930224.1|2848530_2850228_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2850662_2852084_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2852237_2853017_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930221.1|2853141_2854014_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2854125_2855250_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2855295_2856258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2856250_2857105_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2857212_2857623_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2857619_2858570_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2858668_2859550_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2859627_2861007_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2861045_2861891_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|2861906_2862251_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2862253_2862790_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2862962_2863538_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2863640_2864378_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2864445_2866083_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2866190_2866946_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2866933_2867896_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2867997_2868798_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2868859_2870935_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2871099_2873475_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2873555_2874911_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876389_2877112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877166_2878150_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2878279_2879230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879226_2880129_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880216_2880975_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|2880987_2882136_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882176_2883604_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883833_2885048_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2885093_2887964_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890374_2890863_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890988_2893685_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893839_2896122_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2896286_2896919_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2897017_2897968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2898014_2898569_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898636_2899482_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899551_2900520_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2900519_2902316_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2919886	2979780	4106392	holin,tRNA,transposase	Catovirus(22.22%)	50	NA	NA
WP_010930190.1|2919886_2921407_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921449_2921752_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921748_2922381_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922459_2924325_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|2924321_2925137_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|2925144_2926260_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927164_2928043_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2928042_2928867_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2929034_2929985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|2930167_2933047_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|2933028_2933805_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933897_2935361_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935357_2935729_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935746_2937060_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937096_2937555_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937667_2938618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938614_2939628_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939767_2940754_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|2940797_2941598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2942400_2943351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995509.1|2943337_2943499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|2943502_2944105_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2944123_2944756_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|2944993_2946880_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2946898_2947741_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2947737_2949096_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2949316_2950111_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2950341_2951835_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2952070_2954152_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2954346_2955387_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2955521_2956538_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2956559_2957417_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2957461_2958238_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2958605_2959556_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959582_2960047_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2961253_2963542_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963658_2964531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964573_2965728_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965762_2966593_-	transglycosylase	NA	NA	NA	NA	NA
WP_023853525.1|2966676_2968221_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968263_2968623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968624_2969038_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969078_2969396_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969480_2970197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970460_2971882_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971948_2974696_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2975028_2976045_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976380_2977022_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977112_2978549_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978706_2979780_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 24
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	2984666	3119825	4106392	tRNA,transposase	uncultured_Caudovirales_phage(10.0%)	119	NA	NA
WP_010931363.1|2984666_2985683_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986620_2988048_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988044_2989067_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989056_2989530_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_023995116.1|2989655_2990558_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990554_2992198_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2992194_2993202_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994032_2995049_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995148_2995781_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995789_2996179_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996231_2997284_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998147_2999854_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999927_3000428_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000442_3002500_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002526_3002820_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002921_3003869_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003881_3004757_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004877_3005438_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005472_3005796_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006231_3006969_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007267_3008218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3008461_3008725_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3008798_3009080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3009096_3009957_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3009953_3010289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3010342_3010993_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3012673_3013618_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3013663_3013981_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3013983_3014922_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3015099_3015585_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3015603_3016152_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3016183_3016336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|3016428_3017562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443834.1|3017599_3018307_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3018461_3020810_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3020806_3021745_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3021770_3022961_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3022957_3023731_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3023760_3024954_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3025071_3026082_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3026099_3028136_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3028330_3029071_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3029169_3030120_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030162_3031338_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031559_3033350_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033362_3035024_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035036_3037742_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038034_3039789_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039785_3040412_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040408_3041260_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3041335_3043450_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_023853098.1|3043600_3044251_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044396_3044648_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044717_3046100_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046096_3049276_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050083_3051001_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051052_3051784_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051843_3052416_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053924_3054941_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055078_3056128_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056232_3057183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057278_3058004_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058214_3058595_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058900_3059773_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059780_3060161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060314_3061589_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063076_3063985_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064782_3065847_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3067683_3068718_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068907_3069549_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069631_3071458_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071701_3072631_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072630_3073380_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073451_3074366_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074385_3075531_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075591_3076503_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076583_3077534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077632_3078217_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078251_3079241_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079237_3080179_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080175_3081396_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081438_3081753_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081944_3082304_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_003821510.1|3082305_3084036_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084208_3084880_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084894_3086223_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086219_3087119_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087205_3088291_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3088283_3089417_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3089416_3092098_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092468_3093050_+	OmpA family protein	NA	NA	NA	NA	NA
WP_077274086.1|3093127_3093901_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930092.1|3093897_3094575_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094790_3095972_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096744_3096927_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096956_3097907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740670.1|3097893_3098148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566317.1|3098036_3098429_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098705_3099617_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099741_3100716_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100712_3101663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101761_3102847_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102944_3103355_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103970_3105884_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3106019_3108632_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108633_3109368_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3109531_3110713_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110709_3110922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110918_3111899_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111944_3112772_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930067.1|3112918_3114736_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114790_3115174_+	ferredoxin	NA	NA	NA	NA	NA
WP_010930066.1|3115170_3116121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116233_3116485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3116678_3116894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3116990_3118109_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118228_3118441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118600_3118822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118874_3119825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	3233146	3302149	4106392	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3233146_3234097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234093_3235113_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235122_3237831_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237978_3238635_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_154219863.1|3238594_3238747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3238733_3239684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|3239789_3240725_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240924_3242619_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242653_3243580_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243648_3244746_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244764_3245628_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_095586266.1|3245639_3246422_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246418_3247537_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247533_3249066_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249106_3250114_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250258_3250981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250996_3252019_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252335_3253070_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253154_3254900_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254896_3255649_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255693_3256650_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256738_3257305_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257312_3258173_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|3258202_3258946_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|3258962_3259646_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260483_3261398_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261462_3262371_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262461_3263886_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263887_3265210_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265206_3267345_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267422_3272543_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272643_3272952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273021_3273579_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273594_3275076_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275130_3276984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277246_3278584_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278618_3280616_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280633_3282682_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282812_3283679_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283947_3284913_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285027_3286176_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286600_3286912_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286945_3287206_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287355_3288489_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288559_3289696_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289861_3290656_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290718_3291162_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291277_3292228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|3292214_3292403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|3292350_3292758_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292830_3295026_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295247_3296198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296157_3296682_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296813_3297785_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297904_3300349_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300364_3300955_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301198_3302149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	3317595	3417708	4106392	protease,tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
WP_005012067.1|3317595_3318546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319277_3319655_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319639_3320341_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320484_3321177_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321176_3322280_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322389_3324762_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324758_3326318_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326342_3327140_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327171_3328317_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328421_3329864_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|3329866_3330955_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333233_3334184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|3334170_3334389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3335313_3335871_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335846_3336197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336365_3337160_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337156_3338206_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338205_3338895_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338981_3339479_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339510_3340827_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340843_3341818_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341854_3342313_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342312_3342993_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342995_3343424_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343476_3345207_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345272_3345845_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345825_3346512_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346867_3347539_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010926433.1|3348088_3348370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|3348366_3348900_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348881_3349433_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349411_3349654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349658_3350471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350470_3350734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350774_3350972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350952_3351369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351373_3355330_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355322_3355712_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355708_3356242_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356309_3356669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356678_3359291_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359316_3359607_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359624_3359954_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359963_3360482_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360736_3361237_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361244_3361667_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361663_3362062_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362058_3362454_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3362453_3362654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362655_3363138_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363200_3363452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|3363461_3364109_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|3364126_3365077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365505_3366108_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366230_3366473_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366478_3367534_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367562_3368981_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368983_3370261_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|3370247_3370697_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|3371372_3372323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372340_3372562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3372576_3373275_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|3373267_3373588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3374067_3374679_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|3374744_3374957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375208_3376159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376257_3377331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377498_3378293_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378332_3378857_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378849_3380592_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380801_3381560_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381562_3382270_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382286_3383168_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383178_3383937_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383905_3384661_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384730_3386149_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386170_3386821_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386954_3387290_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_023995786.1|3387230_3387392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|3387378_3388329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388405_3390226_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390230_3391304_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391426_3392395_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392468_3393380_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393398_3393971_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394051_3394600_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394599_3396189_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396258_3396498_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|3396538_3397570_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397629_3398811_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398907_3399360_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399369_3400710_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3401026_3402064_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402445_3402805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402888_3403830_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403904_3404855_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405148_3406243_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3406324_3407206_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407227_3408067_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408142_3409660_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409756_3410857_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410873_3411296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814195.1|3411318_3411531_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411577_3412498_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814191.1|3412761_3413430_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413432_3413762_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3413968_3415402_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3415413_3415797_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415858_3416659_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_154219861.1|3416606_3416771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3416757_3417708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016968	Bordetella pertussis strain D925, complete genome	4106392	4004411	4036080	4106392	transposase	Moraxella_phage(50.0%)	33	NA	NA
WP_039249574.1|4004411_4004897_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004985_4005123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005115_4006096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006362_4007172_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007211_4007892_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007885_4008344_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008355_4008718_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008800_4009484_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009539_4009848_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009866_4010181_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010177_4012652_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012659_4014051_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014047_4014233_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014211_4014913_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014909_4015731_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015711_4016836_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016828_4017848_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4018053_4019088_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019188_4019980_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020062_4020437_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020414_4021824_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021816_4023199_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023533_4025138_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4025173_4026187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026197_4027124_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027514_4028465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028634_4029861_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030060_4030927_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030919_4031882_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031982_4032933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033031_4033982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034080_4035031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035129_4036080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
