The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	0	70036	4101132	tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	77634	136108	4101132	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	164893	219510	4101132	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	48	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|170176_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|175184_175364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|182382_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|196450_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|208219_209269_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|209265_210090_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	225502	287026	4101132	tRNA,transposase,protease	Bacillus_phage(25.0%)	56	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013037.1|226439_226640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|237306_237480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|275149_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
>prophage 5
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	391906	449415	4101132	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|392843_393011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|401067_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|402076_402220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|404633_405875_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|412379_413357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418574_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	591469	652660	4101132	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592895_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|613548_614544_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|620917_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|638777_638942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|642118_642787_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	657978	704175	4101132	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|657978_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|680591_680804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|681960_682281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|682273_682972_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|684851_685301_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|685287_686565_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|691439_692087_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	710341	764271	4101132	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|721159_721378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|724593_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|737939_738083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762790_763198_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|763145_763334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	886860	954836	4101132	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907857_908064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|914972_916823_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|917950_918103_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|935599_935737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938654_938870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930067.1|940812_942630_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	978014	1048278	4101132	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979045_979957_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980017_981163_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981182_982097_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982168_982918_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982917_983847_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984090_985917_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985999_986641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986830_987865_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989701_990766_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991563_992472_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993959_995234_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995387_995768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995775_996648_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996953_997334_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997544_998270_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_077085656.1|1010900_1011149_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1011294_1011945_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012095_1014210_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014285_1015137_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015133_1015760_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015756_1017511_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_077085657.1|1017803_1020509_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020521_1022183_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022195_1023986_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024207_1025383_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025425_1026376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026474_1027215_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027409_1029446_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029463_1030474_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030591_1031785_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031814_1032588_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032584_1033775_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033800_1034739_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034735_1037084_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1037238_1037946_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037983_1039117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039209_1039362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039393_1039942_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039960_1040446_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040623_1041562_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041564_1041882_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041927_1042872_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044552_1045203_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045256_1045592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045588_1046449_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046465_1046747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046820_1047084_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047327_1048278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1060496	1117878	4101132	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1060496_1061513_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062343_1063351_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063347_1064991_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1064987_1065890_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066015_1066489_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066478_1067501_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067497_1068925_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069862_1070879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071211_1072147_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072196_1074077_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074143_1074488_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074632_1075769_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075765_1076839_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076996_1078433_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078523_1079165_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079500_1080517_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080849_1083597_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083663_1085085_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085348_1086065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086149_1086467_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086507_1086921_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086922_1087282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087324_1088869_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088952_1089783_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089817_1090972_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091014_1091887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092003_1094292_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095498_1095963_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095989_1096940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097307_1098084_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098128_1098986_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099007_1100024_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100158_1101199_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101393_1103475_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103710_1105204_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105434_1106229_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106449_1107808_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107804_1108647_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108665_1110552_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1110789_1111422_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111440_1112043_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1112046_1112208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1112194_1113145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1113947_1114748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1114791_1115778_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115917_1116931_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116927_1117878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1153229	1218813	4101132	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153229_1155026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155025_1155994_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156063_1156909_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156976_1157531_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157577_1158528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158626_1159259_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159423_1161706_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161860_1164557_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164682_1165171_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167581_1170452_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170497_1171712_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171941_1173369_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173409_1174558_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174570_1175329_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175416_1176319_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176315_1177266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177395_1178379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178433_1179156_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180634_1181990_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182070_1184446_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184610_1186686_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186747_1187548_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187649_1188612_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188599_1189355_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189462_1191100_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191167_1191905_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192007_1192583_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192755_1193292_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1193294_1193639_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193654_1194500_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194538_1195918_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195995_1196877_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196975_1197926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197922_1198333_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198440_1199295_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199287_1200250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200295_1201420_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1201531_1202404_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202528_1203308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203461_1204883_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205317_1207015_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1207043_1207166_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1207241_1208183_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208509_1209256_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209263_1210190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210311_1211229_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211268_1212222_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212246_1212825_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214498_1215107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215184_1215538_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215621_1216611_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216813_1217764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217862_1218813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1381378	1447878	4101132	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1381378_1382329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382394_1382574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1382690_1383413_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383432_1384578_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385485_1386436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1386623_1387826_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1387822_1388581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1388974_1389607_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1390562_1393163_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1393150_1396570_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1396577_1397483_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1397621_1398200_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1398196_1399108_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1399121_1399802_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1400003_1402043_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1402061_1403048_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1403073_1403871_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1403867_1405061_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1405057_1406020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1406037_1407078_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1407065_1407674_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1409262_1410258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1410277_1411456_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1411466_1412384_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1412439_1413390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1413488_1414259_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1414255_1414936_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1415002_1415791_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1416037_1417054_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1417359_1418514_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1423019_1423502_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1423519_1423810_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1423936_1424647_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1424830_1425238_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1425250_1425670_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1425717_1426422_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1426487_1427909_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1427947_1428712_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1428755_1429541_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1429540_1430230_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1430232_1431366_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1431383_1432406_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1432475_1434122_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1434155_1435688_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1435766_1437587_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1437707_1439327_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1439505_1440948_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1441164_1442181_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1442227_1443016_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1443038_1443308_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1443324_1444116_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1444127_1444469_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1444479_1444980_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1444972_1445983_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1445985_1446558_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1446927_1447878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1476049	1514639	4101132	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1476049_1477384_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477436_1479773_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479898_1480462_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480470_1481562_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481633_1482089_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482089_1482884_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482880_1484062_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484048_1484654_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484650_1485424_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485435_1486263_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486424_1488788_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488855_1489575_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489698_1490124_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490158_1491109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491226_1492153_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492218_1493376_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493356_1493824_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493971_1494922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494938_1495373_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495362_1495713_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495909_1497064_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497060_1498233_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498280_1499174_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499219_1499657_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499716_1500406_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1500415_1501366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501464_1502415_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1502513_1503497_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1503759_1504857_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1504867_1508110_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509131_1509776_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509786_1510686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510733_1511819_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511815_1513510_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1513543_1513702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1513688_1514639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1794985	1843000	4101132	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1794985_1795936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796034_1798635_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798741_1799746_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799854_1801195_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801235_1802264_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802459_1803005_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803001_1803562_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803660_1804611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804648_1805236_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805253_1805637_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806996_1808289_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808423_1809464_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809561_1810578_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810845_1811493_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811618_1812377_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1812451_1813141_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1813158_1814043_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814039_1814819_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814845_1815523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815811_1816564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816682_1818083_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818106_1818505_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818680_1818881_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819019_1819748_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819881_1821297_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821300_1822164_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822176_1822926_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823108_1825124_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1825105_1825654_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1825730_1826450_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1826548_1827499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1827597_1828548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828696_1829035_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1829092_1829254_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829285_1829486_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829751_1832325_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1832395_1834969_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837495_1837984_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1838075_1839227_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839280_1840102_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1840140_1841370_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841498_1841939_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1841883_1842063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1842049_1843000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1904562	1963832	4101132	tRNA,transposase,protease	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1904562_1905513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905637_1906447_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1906502_1906661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1906647_1907598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1908871_1910089_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1911145_1912048_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1912124_1912997_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1913127_1913496_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1913553_1914600_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1914795_1916052_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1916056_1917394_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1917543_1918500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1918602_1919535_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1919650_1919971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1919972_1920323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1920370_1921945_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1921997_1922942_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1922959_1923790_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1923782_1925417_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1925413_1926769_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1927675_1929253_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1929256_1930531_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1930628_1931003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1932718_1933852_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1933889_1934495_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1934491_1935310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1935381_1938006_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1937992_1938247_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1938313_1938895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939198_1939459_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1939624_1940248_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1940247_1941021_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941017_1942226_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1942251_1942725_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1942798_1943749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1943847_1944798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1944896_1946246_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1947011_1947767_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1947859_1950742_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1951064_1951490_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1951517_1952666_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1952662_1953169_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1953175_1954471_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1954511_1955816_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1955817_1956456_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1956458_1957619_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1957645_1959001_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1959004_1960075_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1960213_1960450_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1960537_1961644_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1961609_1962914_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1962932_1963832_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	1974072	2031569	4101132	transposase	Staphylococcus_phage(16.67%)	58	NA	NA
WP_005013747.1|1974072_1975023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1975121_1976072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1976058_1976259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1976271_1977357_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1977372_1978134_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1978130_1979054_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1979152_1979677_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1979685_1980429_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1980524_1980764_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1980777_1980930_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1981015_1982506_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1982597_1983536_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1983532_1983709_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1983711_1984374_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1985995_1986139_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1986135_1987110_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1987146_1987290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1987276_1988227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1988223_1989498_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1989595_1990795_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1990791_1991445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1991441_1992878_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1992865_1993225_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930768.1|1995144_1997010_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997267_1998788_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998875_1999526_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000474_2001770_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001791_2002676_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002774_2003650_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003639_2003996_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2004069_2005101_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005230_2005410_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005507_2006032_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006042_2006879_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006991_2007363_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007359_2007911_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007926_2009618_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009666_2010347_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010594_2011059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011228_2012158_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012170_2012818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012891_2014709_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014792_2015743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2016247_2016409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2016395_2017346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2017364_2017712_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2017740_2019180_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2019198_2019594_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2019768_2020377_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2020389_2021208_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2021159_2022134_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2022162_2023224_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2023220_2025437_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2025450_2025909_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2026066_2026411_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2026567_2027473_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2027559_2028573_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2030552_2031569_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2047119	2111488	4101132	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2047119_2048070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2048056_2048248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2048291_2049242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049340_2050306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050443_2051343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053937_2055425_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055435_2056632_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056704_2058024_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058020_2058896_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2058926_2060096_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060092_2060407_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060428_2061151_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061150_2061969_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061973_2062501_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2062506_2063772_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064121_2065261_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065338_2066211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067081_2068032_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067991_2068627_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068986_2070309_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2070537_2071449_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2072873_2073446_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073485_2075315_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075277_2076336_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076373_2076835_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076919_2077666_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079156_2082387_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082453_2083785_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084037_2084412_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084514_2085693_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085703_2086294_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086404_2087211_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2087236_2088031_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089031_2090006_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090164_2090677_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090833_2091805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093549_2094356_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2094352_2095489_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2095604_2096369_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096482_2097253_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2097337_2098549_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098597_2098972_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2099072_2100335_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100331_2101189_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101361_2102363_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102814_2103765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105280_2106480_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106848_2107085_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107148_2107316_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2107429_2109325_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2109488_2110439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110537_2111488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2297956	2359304	4101132	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297956_2298907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299023_2299743_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299915_2300902_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300902_2301385_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301388_2302672_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302668_2303607_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303603_2305313_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305322_2306570_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308180_2309470_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310607_2311381_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312042_2312786_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312860_2313601_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313796_2314633_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314683_2315454_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315503_2316556_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316552_2317179_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2317175_2318222_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318388_2319405_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319503_2320454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323194_2324484_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2324602_2325073_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325083_2326292_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326438_2326903_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326926_2327877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328861_2329635_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329631_2330630_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330714_2331491_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2331646_2333314_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2333631_2334756_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334882_2335506_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335502_2337404_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337452_2338247_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338259_2339261_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339257_2339764_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2339756_2340605_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340702_2341245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341288_2342239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342394_2342721_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2342717_2343002_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2342998_2343478_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343474_2345103_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345099_2345444_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345443_2348377_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349535_2350486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350584_2350881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350987_2351905_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351909_2352623_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352636_2353608_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355327_2355708_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355711_2356899_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357337_2358060_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358353_2359304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2380095	2451249	4101132	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2380095_2381046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381598_2383224_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383273_2384308_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384310_2385657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2385653_2387168_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387158_2388169_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388642_2389584_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389592_2390561_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392100_2393069_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393246_2394236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394282_2395041_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395230_2395968_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2395918_2396080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2396066_2397017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397201_2397984_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397977_2398679_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398918_2399521_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2400705_2400861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2400847_2401798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401794_2403351_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403343_2404117_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404175_2405126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405207_2406383_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406396_2408454_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408450_2409476_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409487_2410777_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2410799_2411897_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2411893_2412784_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2412780_2414865_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2414896_2416066_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416107_2416848_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2416847_2417618_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2418473_2419259_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419285_2421370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421537_2423493_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2423816_2424317_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424415_2425942_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426079_2426967_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426981_2427935_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2427986_2430077_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430092_2430479_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433172_2433976_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435269_2436172_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436236_2437013_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437334_2438384_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438507_2440178_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440182_2440977_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441075_2442026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442045_2442951_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443028_2443727_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2443886_2444831_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2444840_2446331_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446327_2447395_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447458_2448871_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449056_2450277_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450298_2451249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2535450	2597751	4101132	tRNA,transposase	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2535450_2536401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536499_2537270_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537266_2537938_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2537934_2538576_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538588_2539509_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539669_2540830_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2540871_2541822_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2542420_2542645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2542809_2544504_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544625_2544895_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2545010_2545409_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545419_2546376_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546512_2547058_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547078_2549028_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549415_2550192_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550197_2550590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2551011_2551962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551958_2553056_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553087_2554038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2555819_2557061_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557072_2557846_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557872_2558823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558921_2559704_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559792_2561019_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561744_2563130_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563148_2563754_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563750_2565607_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565603_2566404_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566418_2567612_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567679_2568654_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568776_2570000_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570110_2572315_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572609_2573269_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573276_2573483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573821_2574577_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2574592_2574754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2574847_2575363_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575635_2575953_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2576140_2576389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576667_2578023_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2578069_2579449_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579511_2580144_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2580143_2582504_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582545_2583505_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583491_2584178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584174_2584507_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2584622_2585573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2585569_2587636_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2587635_2587908_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2588602_2588692_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2588691_2590476_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2590499_2592665_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2592675_2593275_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2596096_2596792_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2596800_2597751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2683868	2724537	4101132	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2683868_2684819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684929_2685112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685211_2685808_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685991_2687083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687582_2687993_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2688051_2688393_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2688398_2690816_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690828_2691851_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691925_2692285_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692300_2692498_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692833_2693784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2693770_2693932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2693978_2694428_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694424_2695375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2695361_2695502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2695485_2696934_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2697048_2697330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2697282_2697447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697433_2698384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698628_2699342_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699464_2699692_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699986_2700625_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2700697_2701768_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701764_2702715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703130_2703655_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703658_2703928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704126_2705188_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705271_2706906_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706907_2707711_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707739_2708699_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708702_2710217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710253_2711258_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711689_2712160_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712195_2712807_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712837_2713461_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713541_2715074_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2715108_2716350_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716393_2717425_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717421_2718591_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2718584_2719265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2719426_2720269_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720431_2721403_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721574_2722453_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722475_2723546_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723586_2724537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2780002	2852872	4101132	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2780002_2780419_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780529_2781162_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781190_2781634_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781655_2782747_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2782801_2783602_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783737_2784358_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2784497_2784971_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786110_2787061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787057_2794719_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794959_2799006_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799318_2799900_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799896_2801195_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801274_2802303_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2802226_2802577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2802563_2803514_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803510_2804461_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804777_2805383_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2805436_2806750_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806824_2807295_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807294_2808083_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808093_2809746_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809833_2810784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811945_2812452_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812448_2813213_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2813228_2813513_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813577_2814567_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814738_2815668_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815639_2816326_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2816359_2816905_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816949_2818215_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818211_2819114_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2820295_2821240_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2821334_2822852_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822893_2824522_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824629_2825511_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828623_2828998_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829022_2829361_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2829404_2831039_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831077_2832424_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2832531_2833953_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834022_2834607_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834709_2835660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835794_2836901_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836911_2838009_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838153_2839359_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839365_2839887_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2839883_2840375_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840371_2840623_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840603_2841089_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841224_2844686_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2844682_2845588_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845597_2846029_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846275_2846779_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2846790_2848257_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848331_2849207_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849203_2850211_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850678_2850984_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851074_2851665_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930158.1|2851855_2852872_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2856015	2922826	4101132	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2856015_2856966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857064_2858015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858011_2858806_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858837_2859542_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859616_2860417_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860413_2860821_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860817_2861459_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2861451_2863473_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864712_2866044_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866040_2866991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868697_2868964_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869671_2870010_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874563_2875166_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875262_2876552_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876609_2877341_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877337_2878141_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878137_2879226_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879222_2880152_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880300_2881446_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881467_2882418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882748_2886570_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886726_2887395_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887399_2889073_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889091_2890411_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2890415_2892767_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2892786_2894955_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2894951_2900141_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900230_2900545_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900772_2901018_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901112_2901631_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901730_2902936_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903051_2904449_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904565_2905144_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905216_2906608_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906775_2907726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2908006_2908627_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908623_2909037_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909033_2910077_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910132_2910321_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910330_2911095_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911185_2911842_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911933_2912692_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912717_2914319_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914519_2915524_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915624_2915888_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2916005_2916782_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917372_2918323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920706_2921819_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2921875_2922826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	2953212	2992401	4101132	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2953212_2954163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2954149_2954395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2954283_2955180_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957457_2959683_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959847_2960936_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960892_2961546_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961593_2962391_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962922_2963873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963953_2965102_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965158_2966109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2966095_2966314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2966207_2966513_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966541_2966976_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966977_2968222_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968218_2968929_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968943_2969855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970217_2970622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970618_2971077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971083_2971992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971988_2972855_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972841_2973669_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973679_2974807_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975884_2977123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977164_2978427_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978433_2979186_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979237_2979423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979698_2980163_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980194_2980854_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980998_2983107_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983103_2984054_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984157_2984778_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984881_2985622_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986756_2987881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987926_2988295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988536_2989487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990522_2991065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2991257_2991464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991450_2992401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	3376849	3497094	4101132	tRNA,transposase	Acinetobacter_phage(20.0%)	103	NA	NA
WP_023995489.1|3376849_3377800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378204_3378849_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378873_3379458_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379558_3380176_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380178_3381894_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381890_3382199_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3382215_3382851_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382877_3383180_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383280_3384135_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384322_3384547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384716_3384989_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385406_3385814_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386183_3386978_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387078_3388314_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388382_3389399_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3389395_3390787_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390783_3391980_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391976_3393515_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393511_3394771_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396711_3397662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3397648_3397825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3398428_3399523_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399515_3400850_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400803_3401487_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401512_3402676_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3402672_3403674_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403673_3404546_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404542_3405292_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405288_3406080_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406076_3407216_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3407524_3408277_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408310_3409093_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409096_3409486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3410625_3411489_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3411524_3412613_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412609_3413560_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3413546_3413960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3413913_3416892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417818_3418697_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3419661_3420612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013039.1|3420598_3420787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3421694_3422645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422641_3423109_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423151_3423922_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423942_3424743_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424753_3426163_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426257_3427043_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427282_3428299_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428406_3428799_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428936_3429617_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3429621_3430620_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430688_3431639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3433143_3433845_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3433844_3435269_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3436338_3437679_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3437794_3439558_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439669_3440548_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440660_3441476_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441479_3441731_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441815_3442832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443162_3443384_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445744_3446662_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447159_3448368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448447_3450019_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450136_3451072_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451260_3452205_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3452273_3452489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3452772_3458490_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458495_3459623_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459678_3460305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460576_3461593_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461688_3462399_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462395_3463385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3463516_3465112_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465114_3465852_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466007_3466880_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3467148_3468369_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468365_3469025_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469096_3469729_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469758_3470277_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470287_3471397_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471443_3472298_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472299_3473202_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474424_3475375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477131_3478121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478296_3479085_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479081_3480113_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480131_3480695_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480750_3482271_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482534_3483239_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3483246_3483984_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484089_3484464_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484506_3485796_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485792_3486962_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486958_3487798_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487857_3488793_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488805_3489756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489854_3490817_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490848_3491208_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491332_3492235_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492236_3494009_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494043_3494820_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496143_3497094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	3512032	3570105	4101132	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512032_3512983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513111_3514245_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514288_3515194_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515196_3516897_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516893_3517814_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517821_3518799_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518857_3519892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521866_3522103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522229_3523093_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523181_3524003_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524082_3524820_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524816_3525809_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3525922_3526585_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526629_3527778_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530101_3531052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531392_3532343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532441_3533392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533688_3534186_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534228_3536004_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3536050_3536878_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536884_3537619_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538788_3539583_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539872_3540463_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540496_3541825_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541899_3543045_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543156_3544155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544117_3544552_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546068_3546953_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546949_3548155_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548151_3549012_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549124_3550915_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3550955_3551621_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3551621_3551930_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552095_3553382_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554815_3555766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557717_3558932_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559037_3560027_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560023_3560632_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560644_3561274_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561270_3561891_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561922_3562714_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3563556_3564021_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564039_3564966_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565019_3566306_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567236_3568109_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568105_3569056_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569154_3570105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	3702227	3834087	4101132	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.34%)	118	3747920:3747937	3790444:3790461
WP_010929577.1|3702227_3703178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3703277_3704228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3704224_3704860_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3704989_3705889_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3705984_3706476_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3706522_3707488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3708621_3709863_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3709976_3710993_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711027_3711504_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3711646_3712555_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3712668_3713781_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_003818475.1|3713881_3714415_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3714503_3715754_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3715855_3716368_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_076879639.1|3716273_3716480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3716466_3717417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3717482_3718421_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3718443_3719070_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3719066_3719723_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3719719_3720322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807309.1|3720328_3720955_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
WP_010929869.1|3721096_3721666_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3721736_3723056_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3723162_3723354_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3723605_3724895_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3725049_3726045_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3726129_3726804_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3726800_3727751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068983.1|3727737_3727920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816336.1|3727912_3729154_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3729150_3730095_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3730213_3731164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3731123_3732053_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3732106_3732442_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3732486_3733251_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3733274_3734015_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248486.1|3734022_3735597_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
WP_010929862.1|3735610_3736588_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929861.1|3736860_3737460_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
WP_094145972.1|3737493_3744396_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3744842_3744974_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_019248159.1|3745005_3745167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929858.1|3745239_3745446_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3746450_3747110_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3747137_3748283_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747920:3747937	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3748423_3748759_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3748833_3749694_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3749957_3750659_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3750828_3751224_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929851.1|3751333_3752284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3752319_3752787_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3753020_3753398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3753394_3753577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3753580_3754567_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3754563_3755211_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3755268_3755796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929846.1|3755829_3757017_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_023853043.1|3757006_3757369_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
WP_010929844.1|3757361_3757481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926403.1|3757481_3757682_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3757678_3758668_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3760154_3762125_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3762366_3762765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3762773_3763697_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3764154_3765105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3765335_3767027_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3767075_3767348_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3767344_3767716_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3767811_3767946_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3768351_3769761_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816023.1|3769757_3770873_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929838.1|3770967_3773421_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3773539_3774331_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3774450_3775878_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3775916_3776888_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3777306_3778470_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3778557_3779403_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995443.1|3780832_3780973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3780959_3781910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3782458_3782833_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3782907_3783966_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3783989_3784940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3787821_3788991_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3789091_3790699_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3790444:3790461	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3790745_3792767_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3792795_3793041_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3793054_3794245_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3794440_3795406_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3795428_3796568_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3796779_3797742_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3797865_3799890_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3800086_3802330_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3802608_3803067_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3803994_3806616_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3806679_3809307_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3809458_3810523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815975.1|3810519_3811293_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3811301_3812135_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3812147_3812927_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|3812961_3814434_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3814461_3815220_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3815275_3817126_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3817219_3817696_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3817712_3818633_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3818739_3819240_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3819613_3820306_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_153302770.1|3820460_3820628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3820614_3821565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3821561_3825335_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3825671_3827561_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3827572_3828466_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_003817654.1|3828491_3829367_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3829363_3830215_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3830276_3830957_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3830984_3831320_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3831320_3832280_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3832300_3832789_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3833070_3834087_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP016967	Bordetella pertussis strain E025, complete genome	4101132	4000200	4065112	4101132	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4000200_4000686_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4000774_4000912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4000904_4001885_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4002151_4002961_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4003000_4003681_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4003674_4004133_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4004144_4004507_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4004589_4005273_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4005328_4005637_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4005655_4005970_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4005966_4008441_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4008448_4009840_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4009836_4010022_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4010000_4010702_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4010698_4011520_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4011500_4012625_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4012617_4013637_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4013842_4014877_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4014977_4015769_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4015851_4016226_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4016203_4017613_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4017605_4018988_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4019322_4020927_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4020962_4021976_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4021986_4022913_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4023303_4024254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024423_4025650_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025849_4026716_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026708_4027671_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027771_4028722_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028820_4029771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029869_4030820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030816_4032310_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032306_4035414_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035410_4038479_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038475_4039726_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039906_4040668_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040700_4041351_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041353_4042193_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042433_4043177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4043259_4043607_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043704_4044547_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044591_4045479_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045505_4045694_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045791_4047249_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047235_4048762_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048780_4049248_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4049247_4050270_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4050390_4051131_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4051185_4052286_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052287_4053478_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053597_4054614_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054932_4055604_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055600_4056509_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056720_4057368_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061219_4062296_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062306_4063116_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063205_4063979_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4063998_4064175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4064161_4065112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
