The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	0	70036	4105336	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	77634	136108	4105336	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_005012808.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	164893	225404	4105336	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169127_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174135_174315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	233336	286924	4105336	transposase,protease,tRNA	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236257_236431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	390857	448366	4105336	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391794_391962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401027_401171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	590420	651611	4105336	transposase,protease	uncultured_Mediterranean_phage(40.0%)	57	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612499_613495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619868_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637728_637893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639097_640531_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641069_641738_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	656929	703126	4105336	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(17.39%)	53	NA	NA
WP_003814219.1|656929_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995786.1|667107_667269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679542_679755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680911_681232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681224_681923_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683802_684252_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690390_691038_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	709292	763222	4105336	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|720110_720329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|723544_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|736890_737034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762096_762285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	885811	953787	4105336	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913923_915774_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916901_917054_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934550_934688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|939763_941581_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	976965	1047232	4105336	transposase	Streptococcus_phage(14.29%)	56	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977996_978908_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980133_981048_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981119_981869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984950_985592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985781_986816_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990514_991423_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992910_994185_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994726_995599_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996495_997221_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1010248_1010899_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011049_1013164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1036192_1036900_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036937_1038071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	1059450	1116832	4105336	transposase,holin,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010929632.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061297_1062305_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062301_1063945_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063941_1064844_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064969_1065443_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065432_1066455_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070165_1071101_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071150_1073031_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073097_1073442_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079803_1082551_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095911_1096049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1111000_1111162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1112901_1113702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	1124514	1197931	4105336	transposase,tRNA	Catovirus(25.0%)	54	NA	NA
WP_010929591.1|1124514_1125465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125632_1126457_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126456_1127335_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128239_1129355_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930187.1|1129362_1130178_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930188.1|1130174_1132040_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132118_1132751_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132747_1133050_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133092_1134613_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1134619_1135375_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1135404_1136509_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1136611_1138312_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1138293_1139271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1139280_1140561_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1140553_1141249_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1141282_1142110_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1142391_1145622_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930195.1|1145890_1146067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930196.1|1146357_1150284_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1152183_1153980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153979_1154948_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155017_1155863_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155930_1156485_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156531_1157482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157580_1158213_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158379_1160662_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160816_1163513_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163638_1164127_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1166209_1167160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_135247282.1|1167146_1167404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813631.1|1167586_1170457_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170502_1171717_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171946_1173374_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173414_1174563_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174575_1175334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175421_1176324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176320_1177271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177400_1178384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178438_1179161_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180639_1181995_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182075_1184451_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184615_1186691_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186752_1187553_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187654_1188617_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188604_1189360_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189467_1191105_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191172_1191910_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192012_1192588_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192760_1193297_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1193299_1193644_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193659_1194505_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194543_1195923_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196000_1196882_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196980_1197931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	1381383	1447883	4105336	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1381383_1382334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382399_1382579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1382695_1383418_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383437_1384583_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385490_1386441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1386628_1387831_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1387827_1388586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1388979_1389612_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1390567_1393168_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1393155_1396575_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1396582_1397488_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1397626_1398205_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1398201_1399113_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1399126_1399807_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1400008_1402048_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1402066_1403053_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1403078_1403876_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1403872_1405066_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1405062_1406025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1406042_1407083_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1407070_1407679_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1409267_1410263_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1410282_1411461_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1411471_1412389_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1412444_1413395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1413493_1414264_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1414260_1414941_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1415007_1415796_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1416042_1417059_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1417364_1418519_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1423024_1423507_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1423524_1423815_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1423941_1424652_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1424835_1425243_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1425255_1425675_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1425722_1426427_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1426492_1427914_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1427952_1428717_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1428760_1429546_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1429545_1430235_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1430237_1431371_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1431388_1432411_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1432480_1434127_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1434160_1435693_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1435771_1437592_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1437712_1439332_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1439510_1440953_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1441169_1442186_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1442232_1443021_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1443043_1443313_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1443329_1444121_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1444132_1444474_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1444484_1444985_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1444977_1445988_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1445990_1446563_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1446932_1447883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	1476054	1514644	4105336	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1476054_1477389_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477441_1479778_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479903_1480467_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480475_1481567_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481638_1482094_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482094_1482889_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482885_1484067_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484053_1484659_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484655_1485429_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485440_1486268_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486429_1488793_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488860_1489580_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489703_1490129_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490163_1491114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491231_1492158_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492223_1493381_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493361_1493829_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493976_1494927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494943_1495378_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495367_1495718_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495914_1497069_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497065_1498238_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498285_1499179_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499224_1499662_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499721_1500411_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500420_1501371_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501469_1502420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1502518_1503502_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1503764_1504862_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1504872_1508115_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509136_1509781_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509791_1510691_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510738_1511824_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511820_1513515_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1513548_1513707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1513693_1514644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	1796039	1844054	4105336	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1796039_1796990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1797088_1799689_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1799795_1800800_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1800908_1802249_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1802289_1803318_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1803513_1804059_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1804055_1804616_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1804714_1805665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1805702_1806290_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1806307_1806691_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1808050_1809343_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1809477_1810518_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1810615_1811632_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1811899_1812547_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1812672_1813431_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1813505_1814195_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1814212_1815097_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1815093_1815873_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1815899_1816577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816865_1817618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1817736_1819137_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1819160_1819559_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1819734_1819935_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1820073_1820802_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820935_1822351_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1822354_1823218_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1823230_1823980_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1824162_1826178_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1826159_1826708_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1826784_1827504_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1827602_1828553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1828651_1829602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1829750_1830089_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1830146_1830308_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1830339_1830540_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1830805_1833379_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1833449_1836023_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1838549_1839038_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1839129_1840281_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1840334_1841156_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1841194_1842424_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1842552_1842993_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1842937_1843117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1843103_1844054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	1905616	1964886	4105336	transposase,protease,tRNA	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1905616_1906567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1906691_1907501_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1907556_1907715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1907701_1908652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1909925_1911143_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1912199_1913102_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1913178_1914051_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1914181_1914550_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1914607_1915654_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1915849_1917106_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1917110_1918448_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1918597_1919554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1919656_1920589_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1920704_1921025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1921026_1921377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1921424_1922999_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1923051_1923996_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1924013_1924844_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1924836_1926471_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1926467_1927823_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1928729_1930307_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1930310_1931585_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1931682_1932057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1933772_1934906_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1934943_1935549_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1935545_1936364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1936435_1939060_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1939046_1939301_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1939367_1939949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1940252_1940513_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1940678_1941302_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1941301_1942075_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1942071_1943280_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1943305_1943779_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1943852_1944803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1944901_1945852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1945950_1947300_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1948065_1948821_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1948913_1951796_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1952118_1952544_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1952571_1953720_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1953716_1954223_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1954229_1955525_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1955565_1956870_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1956871_1957510_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1957512_1958673_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1958699_1960055_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1960058_1961129_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1961267_1961504_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1961591_1962698_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1962663_1963968_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1963986_1964886_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2030984	2149303	4105336	transposase,tRNA	uncultured_Caudovirales_phage(22.22%)	105	NA	NA
WP_010930730.1|2030984_2031935_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2032805_2033678_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2033755_2034895_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2035244_2036510_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2036515_2037043_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2037047_2037866_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2037865_2038588_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2038609_2038924_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2038920_2040090_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2040120_2040996_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2040992_2042312_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2042384_2043581_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2043591_2045079_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2047673_2048573_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2048710_2049676_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2049774_2050725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2050768_2050960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2050946_2051897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2051893_2052196_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2052355_2052760_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2052752_2053979_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2053975_2054422_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2054491_2055274_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2055315_2056821_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_047122807.1|2057106_2057901_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2059377_2060199_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2060217_2061072_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2061075_2062047_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248938.1|2062121_2062727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247855.1|2062731_2062908_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2063393_2064344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2065481_2065778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2065952_2067305_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2067447_2068464_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2070443_2071457_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2071543_2072449_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2072605_2072950_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2073107_2073566_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2073579_2075796_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2075792_2076854_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2076882_2077857_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2077808_2078627_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2078639_2079248_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2079422_2079818_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2079836_2081276_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2081304_2081652_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2081670_2082621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2082607_2082769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2083273_2084224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2084307_2086125_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2086198_2086846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2086858_2087788_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2087957_2088422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2088669_2089350_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2089398_2091090_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2091105_2091657_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2091653_2092025_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2092137_2092974_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2092984_2093509_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2093606_2093786_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2093915_2094947_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2095020_2095377_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2095366_2096242_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2096340_2097225_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2097246_2098542_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2099490_2100141_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2100228_2101749_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2102006_2103872_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2104917_2105868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2105966_2106917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2108432_2109632_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2110000_2110237_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2110300_2110468_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2110581_2112477_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2112640_2113591_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2113689_2114640_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810262.1|2115015_2115354_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_003810260.1|2115476_2115989_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930709.1|2115985_2117188_+	MFS transporter	NA	NA	NA	NA	NA
WP_003818515.1|2117265_2119923_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_003810254.1|2119938_2120598_+	lipoprotein	NA	NA	NA	NA	NA
WP_003818514.1|2120600_2121656_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_010930708.1|2121777_2123037_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003810249.1|2123033_2123429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930707.1|2123451_2124846_-	amidase family protein	NA	NA	NA	NA	NA
WP_010930706.1|2125027_2125975_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810239.1|2125971_2126244_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_047122782.1|2126308_2126752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248843.1|2133309_2133558_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_010930705.1|2133646_2134609_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|2135840_2137358_-	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010926318.1|2137583_2138495_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853556.1|2138639_2138870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2138856_2139807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248436.1|2139874_2140324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930703.1|2140709_2141480_-	anion permease	NA	NA	NA	NA	NA
WP_010930702.1|2141483_2142386_-	EamA family transporter	NA	NA	NA	NA	NA
WP_010930701.1|2142454_2142754_-	YciI family protein	NA	NA	NA	NA	NA
WP_003810207.1|2142889_2143180_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003810206.1|2143186_2143573_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_029443737.1|2143585_2144329_-	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_010930699.1|2144395_2146987_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_010930698.1|2147381_2147720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930697.1|2147722_2148271_+	OmpA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2148352_2149303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2301108	2362456	4105336	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2301108_2302059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2302175_2302895_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2303067_2304054_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2304054_2304537_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2304540_2305824_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2305820_2306759_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2306755_2308465_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2308474_2309722_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2311332_2312622_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2313759_2314533_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2315194_2315938_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2316012_2316753_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2316948_2317785_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2317835_2318606_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2318655_2319708_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2319704_2320331_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2320327_2321374_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2321540_2322557_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2322655_2323606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2326346_2327636_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2327754_2328225_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2328235_2329444_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2329590_2330055_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2330078_2331029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2332013_2332787_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2332783_2333782_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2333866_2334643_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2334798_2336466_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2336783_2337908_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2338034_2338658_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2338654_2340556_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2340604_2341399_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2341411_2342413_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2342409_2342916_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2342908_2343757_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2343854_2344397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2344440_2345391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2345546_2345873_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2345869_2346154_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2346150_2346630_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2346626_2348255_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2348251_2348596_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2348595_2351529_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2352687_2353638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2353736_2354033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2354139_2355057_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2355061_2355775_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2355788_2356760_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2358479_2358860_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2358863_2360051_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2360489_2361212_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2361505_2362456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2383247	2454401	4105336	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2383247_2384198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2384750_2386376_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2386425_2387460_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2387462_2388809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2388805_2390320_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2390310_2391321_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2391794_2392736_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2392744_2393713_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2395252_2396221_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2396398_2397388_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2397434_2398193_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2398382_2399120_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2399070_2399232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2399218_2400169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2400353_2401136_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2401129_2401831_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2402070_2402673_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2403857_2404013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2403999_2404950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2404946_2406503_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2406495_2407269_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2407327_2408278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2408359_2409535_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2409548_2411606_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2411602_2412628_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2412639_2413929_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2413951_2415049_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2415045_2415936_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2415932_2418017_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2418048_2419218_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2419259_2420000_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2419999_2420770_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2421625_2422411_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2422437_2424522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2424689_2426645_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2426968_2427469_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2427567_2429094_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2429231_2430119_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2430133_2431087_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2431138_2433229_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2433244_2433631_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2436324_2437128_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2438421_2439324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2439388_2440165_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_095593568.1|2440486_2441536_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2441659_2443330_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2443334_2444129_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2444227_2445178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2445197_2446103_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2446180_2446879_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2447038_2447983_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2447992_2449483_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2449479_2450547_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2450610_2452023_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2452208_2453429_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2453450_2454401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2538600	2589772	4105336	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2538600_2539551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2539649_2540420_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2540416_2541088_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2541084_2541726_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2541738_2542659_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2542819_2543980_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2544021_2544972_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2545570_2545795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2545959_2547654_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2547775_2548045_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2548160_2548559_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2548569_2549526_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2549662_2550208_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2550228_2552178_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2552565_2553342_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2553347_2553740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2554161_2555112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2555108_2556206_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2556237_2557188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2558969_2560211_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560222_2560996_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561022_2561973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562071_2562854_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562942_2564169_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564894_2566280_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566298_2566904_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566900_2568757_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568753_2569554_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569568_2570762_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570829_2571804_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571926_2573150_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573260_2575465_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575759_2576419_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576426_2576633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576971_2577727_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2577742_2577904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2577997_2578513_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578785_2579103_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2579290_2579539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579817_2581173_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2581219_2582599_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582661_2583294_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2583293_2585654_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585695_2586655_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586641_2587328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587324_2587657_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587772_2588723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588821_2589772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2688067	2728736	4105336	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2688067_2689018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689128_2689311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689410_2690007_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690190_2691282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691781_2692192_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2692250_2692592_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2692597_2695015_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695027_2696050_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696124_2696484_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696499_2696697_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697032_2697983_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2697969_2698131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2698177_2698627_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698623_2699574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2699560_2699701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2699684_2701133_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2701247_2701529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2701481_2701646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701632_2702583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702827_2703541_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703663_2703891_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704185_2704824_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2704896_2705967_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705963_2706914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707329_2707854_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707857_2708127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708325_2709387_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709470_2711105_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711106_2711910_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711938_2712898_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712901_2714416_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714452_2715457_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715888_2716359_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716394_2717006_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717036_2717660_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717740_2719273_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2719307_2720549_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720592_2721624_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721620_2722790_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722783_2723464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723625_2724468_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724630_2725602_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725773_2726652_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726674_2727745_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727785_2728736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2784201	2857071	4105336	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2784201_2784618_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784728_2785361_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785389_2785833_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785854_2786946_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787000_2787801_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787936_2788557_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788696_2789170_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790309_2791260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791256_2798918_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799158_2803205_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803517_2804099_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804095_2805394_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805473_2806502_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2806425_2806776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2806762_2807713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807709_2808660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808976_2809582_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809635_2810949_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811023_2811494_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811493_2812282_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812292_2813945_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814032_2814983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816144_2816651_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816647_2817412_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817427_2817712_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817776_2818766_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818937_2819867_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819838_2820525_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820558_2821104_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821148_2822414_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822410_2823313_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824494_2825439_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825533_2827051_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827092_2828721_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828828_2829710_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832822_2833197_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833221_2833560_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833603_2835238_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835276_2836623_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836730_2838152_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838221_2838806_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838908_2839859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839993_2841100_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841110_2842208_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842352_2843558_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843564_2844086_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844082_2844574_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844570_2844822_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844802_2845288_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845423_2848885_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2848881_2849787_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849796_2850228_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850474_2850978_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2850989_2852456_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852530_2853406_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853402_2854410_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854877_2855183_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855273_2855864_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856054_2857071_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2860214	2927024	4105336	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2860214_2861165_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861263_2862214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862210_2863005_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863036_2863741_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863815_2864616_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864612_2865020_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865016_2865658_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2865650_2867672_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868911_2870243_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870239_2871190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872896_2873163_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873870_2874209_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878761_2879364_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879460_2880750_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880807_2881539_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881535_2882339_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882335_2883424_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883420_2884350_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884498_2885644_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885665_2886616_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886633_2886792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886946_2890768_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890924_2891593_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891597_2893271_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893289_2894609_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2894613_2896965_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2896984_2899153_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899149_2904339_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904428_2904743_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904970_2905216_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905310_2905829_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905928_2907134_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907249_2908647_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908763_2909342_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909414_2910806_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910973_2911924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912204_2912825_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912821_2913235_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913231_2914275_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914330_2914519_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914528_2915293_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915383_2916040_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916131_2916890_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916915_2918517_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918717_2919722_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919822_2920086_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920203_2920980_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921570_2922521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924904_2926017_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926073_2927024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	2957410	3050398	4105336	transposase	Bacillus_virus(27.27%)	90	NA	NA
WP_005012067.1|2957410_2958361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2958347_2958593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958481_2959378_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961655_2963881_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964045_2965134_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965090_2965744_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965791_2966589_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967120_2968071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968151_2969300_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969356_2970307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2970293_2970512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2970405_2970711_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970739_2971174_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971175_2972420_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972416_2973127_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973141_2974053_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974415_2974820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974816_2975275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975281_2976190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976186_2977053_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977039_2977867_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977877_2979005_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980082_2981321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981362_2982625_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982631_2983384_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983435_2983621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983896_2984361_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984392_2985052_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985196_2987305_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987301_2988252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988355_2988976_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989079_2989820_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990954_2992079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992124_2992493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992734_2993685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994720_2995263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2995455_2995662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995648_2996599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996595_2997561_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997630_2998467_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|2998943_3000089_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000150_3001101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001293_3002076_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3002089_3002839_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3002866_3004213_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004238_3005168_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005283_3006189_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3006206_3007406_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3007478_3008171_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3008219_3010646_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3010690_3011641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|3011658_3011805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|3011857_3012226_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3012512_3013439_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3013482_3014493_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3014489_3014924_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3016049_3016838_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3016847_3017630_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3017633_3018725_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3018830_3020306_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3020447_3020996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3021011_3021473_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3021573_3022563_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3022861_3023563_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3023601_3024975_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3025013_3026300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3027186_3028089_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3028036_3029257_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3029253_3029763_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3029752_3030448_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3030518_3031388_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3031737_3032688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3033548_3034238_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3035014_3035977_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3035980_3036841_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3036834_3037227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486092.1|3037257_3038430_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_014486094.1|3039881_3040679_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3040712_3041492_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|3041520_3042393_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|3042414_3043164_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3043171_3044029_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3044069_3044633_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3044663_3044960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3045040_3045844_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|3045864_3047061_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|3047063_3048065_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3048417_3048588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3048682_3049345_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3049447_3050398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	3185519	3247752	4105336	transposase,protease	Xanthomonas_phage(33.33%)	53	NA	NA
WP_005012067.1|3185519_3186470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3186478_3187027_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
WP_003814557.1|3187023_3187632_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3187814_3188285_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3188291_3189551_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3189603_3190416_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3190530_3191085_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_023998380.1|3191094_3192084_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3192263_3192983_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3192999_3195735_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3195914_3196901_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_003814566.1|3196942_3197437_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3197548_3198472_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3198700_3199885_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3200073_3201300_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3201304_3202126_-	cell division protein FtsQ	NA	NA	NA	NA	NA
WP_003814571.1|3202138_3203089_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3203085_3204492_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3204488_3205562_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3205558_3206752_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3206748_3208281_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3208277_3209447_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3209436_3212274_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_076879606.1|3212270_3213971_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3213997_3214276_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3214275_3215370_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_003814584.1|3215378_3215870_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3216609_3218418_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3218457_3219537_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3219533_3220727_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3220876_3221155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814593.1|3221483_3221876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3228600_3229077_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3229229_3230342_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3230409_3230970_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3230993_3231326_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3231309_3232998_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3233117_3233906_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3234613_3235564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995100.1|3235523_3235700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|3236008_3236320_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236319_3236850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154299518.1|3236858_3237026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3237012_3237963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238252_3238717_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238731_3240237_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3240490_3242098_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242153_3243059_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243499_3244450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3244531_3245113_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3245537_3245843_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3245856_3247191_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3247212_3247752_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 26
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	3266175	3313767	4105336	transposase,holin,tRNA	Tupanvirus(16.67%)	41	NA	NA
WP_010931277.1|3266175_3266511_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3266510_3267353_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3267451_3268402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3268466_3269438_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3269501_3270521_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3270522_3271896_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3272173_3272854_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3272866_3274993_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3274989_3276084_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3276098_3277358_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3277377_3279102_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3279340_3280093_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023994812.1|3280101_3280245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3280231_3281182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3281494_3282973_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3282979_3284089_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3284100_3284781_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3284802_3285558_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3285693_3286578_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3286665_3287247_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931295.1|3287339_3287462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566249.1|3287507_3287807_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_076879609.1|3287958_3288384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003808356.1|3290590_3291094_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3291109_3292060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_085964339.1|3292046_3292244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814148.1|3292587_3293361_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3293493_3294504_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3294655_3296311_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3296365_3296707_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3296720_3298160_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3298292_3299108_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996332.1|3299126_3299315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3299301_3300252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3301639_3302587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3302813_3303554_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3303639_3304590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3306031_3307603_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3307935_3309789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3309833_3312398_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3312816_3313767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	3379997	3433738	4105336	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3379997_3380948_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381352_3381997_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382021_3382606_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382706_3383324_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383326_3385042_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385038_3385347_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3385363_3385999_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386025_3386328_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386428_3387283_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387470_3387695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387864_3388137_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388554_3388962_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389331_3390126_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390226_3391462_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391530_3392547_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3392543_3393935_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393931_3395128_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395124_3396663_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396659_3397919_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399859_3400810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3400796_3400973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3401576_3402671_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402663_3403998_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403951_3404635_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404660_3405824_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3405820_3406822_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406821_3407694_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407690_3408440_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408436_3409228_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409224_3410364_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3410672_3411425_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411458_3412241_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412244_3412634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413773_3414637_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414672_3415761_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415757_3416708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3416694_3417108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3417061_3420040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420966_3421845_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423793_3424744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424740_3425208_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425250_3426021_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426041_3426842_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426852_3428262_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428356_3429142_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429381_3430398_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430505_3430898_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431035_3431716_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3431720_3432719_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432787_3433738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	3439893	3499193	4105336	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439893_3441657_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441768_3442647_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442759_3443575_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443578_3443830_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443914_3444931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445261_3445483_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447843_3448761_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449258_3450467_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450546_3452118_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452235_3453171_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453359_3454304_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3454372_3454588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3454871_3460589_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460594_3461722_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461777_3462404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3462675_3463692_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463787_3464498_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464494_3465484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3465615_3467211_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467213_3467951_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468106_3468979_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469247_3470468_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470464_3471124_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471195_3471828_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471857_3472376_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472386_3473496_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473542_3474397_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474398_3475301_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476523_3477474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479230_3480220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480395_3481184_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481180_3482212_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482230_3482794_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482849_3484370_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484633_3485338_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485345_3486083_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486188_3486563_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486605_3487895_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487891_3489061_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489057_3489897_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489956_3490892_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490904_3491855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491953_3492916_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492947_3493307_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493431_3494334_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494335_3496108_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496142_3496919_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498242_3499193_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	3514131	3572204	4105336	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514131_3515082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515210_3516344_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516387_3517293_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517295_3518996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518992_3519913_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519920_3520898_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520956_3521991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523965_3524202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524328_3525192_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525280_3526102_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526181_3526919_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526915_3527908_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528021_3528684_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528728_3529877_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532200_3533151_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533491_3534442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534540_3535491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535787_3536285_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536327_3538103_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3538149_3538977_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538983_3539718_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540887_3541682_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541971_3542562_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542595_3543924_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543998_3545144_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545255_3546254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546216_3546651_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548167_3549052_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549048_3550254_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550250_3551111_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551223_3553014_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553054_3553720_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553720_3554029_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554194_3555481_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556914_3557865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559816_3561031_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561136_3562126_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562122_3562731_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562743_3563373_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563369_3563990_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564021_3564813_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3565655_3566120_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566138_3567065_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567118_3568405_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569335_3570208_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570204_3571155_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571253_3572204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP016966	Bordetella pertussis strain E541, complete genome	4105336	4003355	4068267	4105336	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4003355_4003841_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003929_4004067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004059_4005040_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005306_4006116_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006155_4006836_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006829_4007288_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007299_4007662_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007744_4008428_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008483_4008792_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008810_4009125_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009121_4011596_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011603_4012995_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012991_4013177_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013155_4013857_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013853_4014675_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014655_4015780_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015772_4016792_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4016997_4018032_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018132_4018924_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4019006_4019381_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019358_4020768_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020760_4022143_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022477_4024082_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4024117_4025131_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025141_4026068_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486111.1|4026458_4027409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027578_4028805_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029004_4029871_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029863_4030826_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030926_4031877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031975_4032926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033024_4033975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033971_4035465_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035461_4038569_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038565_4041634_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041630_4042881_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043061_4043823_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043855_4044506_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044508_4045348_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045588_4046332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046414_4046762_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046859_4047702_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047746_4048634_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048660_4048849_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048946_4050404_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050390_4051917_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051935_4052403_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052402_4053425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053545_4054286_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054340_4055441_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055442_4056633_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056752_4057769_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058087_4058759_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058755_4059664_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059875_4060523_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064374_4065451_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065461_4066271_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066360_4067134_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4067153_4067330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4067316_4068267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
