The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	0	70036	4102255	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	77634	136108	4102255	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	164892	225403	4102255	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169126_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174134_174314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	233335	286923	4102255	protease,transposase,tRNA	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236256_236430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274099_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	390856	448365	4102255	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391793_391961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400017_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401026_401170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403583_404825_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411329_412307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417524_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	590419	651609	4102255	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591845_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612497_613493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619866_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624045_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637726_637891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637838_638639_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638700_639084_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639095_640529_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641067_641736_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643201_643624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643640_644741_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644837_646355_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647291_648173_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648254_649349_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	656927	703124	4102255	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|656927_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657999_658239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662102_663071_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666168_667119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669836_670592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678338_679289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679540_679753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679818_680430_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680909_681230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681222_681921_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681935_682157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682174_683125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683800_684250_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689420_690371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690388_691036_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691843_692044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692830_693253_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694015_694534_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694890_695181_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698255_698789_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698785_699175_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	709290	763220	4102255	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|720108_720327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|723542_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|736888_737032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762094_762283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	885809	953785	4102255	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010931070.1|902411_903362_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913921_915772_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916899_917052_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917160_917328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934548_934686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|939761_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	976963	1047230	4102255	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976963_977914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977994_978906_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978966_980112_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980131_981046_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981117_981867_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981866_982796_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983039_984866_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984948_985590_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985779_986814_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988650_989715_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990512_991421_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992908_994183_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994336_994717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994724_995597_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995902_996283_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996493_997219_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002081_1002654_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005221_1008401_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008397_1009780_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1010246_1010897_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011047_1013162_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014085_1014712_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014708_1016463_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019473_1021135_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021147_1022938_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023159_1024335_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1036190_1036898_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036935_1038069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1059448	1116830	4102255	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063939_1064842_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070163_1071099_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071148_1073029_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073095_1073440_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079801_1082549_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1110998_1111160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1112899_1113700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1152181	1217765	4102255	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152181_1153978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153977_1154946_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155015_1155861_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155928_1156483_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157578_1158211_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158375_1160658_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160812_1163509_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163634_1164123_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166533_1169404_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169449_1170664_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170893_1172321_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1172361_1173510_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173522_1174281_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174368_1175271_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175267_1176218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176347_1177331_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177385_1178108_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179586_1180942_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181022_1183398_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183562_1185638_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185699_1186500_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186601_1187564_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187551_1188307_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188414_1190052_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190119_1190857_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190959_1191535_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191707_1192244_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1192246_1192591_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192606_1193452_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193490_1194870_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194947_1195829_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195927_1196878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196874_1197285_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197392_1198247_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198239_1199202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199247_1200372_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1200483_1201356_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201480_1202260_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202413_1203835_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204269_1205967_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1205995_1206118_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1206193_1207135_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207461_1208208_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208215_1209142_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209263_1210181_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210220_1211174_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211198_1211777_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213450_1214059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214136_1214490_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214573_1215563_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215765_1216716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216814_1217765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1381379	1447879	4102255	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1381379_1382330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382395_1382575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1382691_1383414_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383433_1384579_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385486_1386437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1386624_1387827_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1387823_1388582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1388975_1389608_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1390563_1393164_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1393151_1396571_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1396578_1397484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1397622_1398201_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1398197_1399109_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1399122_1399803_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1400004_1402044_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1402062_1403049_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1403074_1403872_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1403868_1405062_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1405058_1406021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1406038_1407079_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1407066_1407675_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1409263_1410259_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1410278_1411457_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1411467_1412385_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1412440_1413391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1413489_1414260_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1414256_1414937_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1415003_1415792_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1416038_1417055_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1417360_1418515_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1423020_1423503_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1423520_1423811_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1423937_1424648_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1424831_1425239_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1425251_1425671_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1425718_1426423_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1426488_1427910_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1427948_1428713_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1428756_1429542_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1429541_1430231_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1430233_1431367_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1431384_1432407_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1432476_1434123_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1434156_1435689_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1435767_1437588_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1437708_1439328_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1439506_1440949_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1441165_1442182_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1442228_1443017_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1443039_1443309_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1443325_1444117_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1444128_1444470_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1444480_1444981_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1444973_1445984_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1445986_1446559_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1446928_1447879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1476050	1514640	4102255	protease,transposase	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1476050_1477385_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477437_1479774_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479899_1480463_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480471_1481563_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481634_1482090_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482090_1482885_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482881_1484063_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484049_1484655_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484651_1485425_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485436_1486264_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486425_1488789_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488856_1489576_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489699_1490125_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490159_1491110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491227_1492154_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492219_1493377_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493357_1493825_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493972_1494923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494939_1495374_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495363_1495714_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495910_1497065_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497061_1498234_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498281_1499175_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499220_1499658_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499717_1500407_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500416_1501367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501465_1502416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1502514_1503498_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1503760_1504858_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1504868_1508111_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509132_1509777_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509787_1510687_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510734_1511820_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511816_1513511_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1513544_1513703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1513689_1514640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1794986	1852265	4102255	transposase,tRNA	Klosneuvirus(13.33%)	51	NA	NA
WP_010930522.1|1794986_1795937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796035_1798636_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798742_1799747_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799855_1801196_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801236_1802265_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802460_1803006_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803002_1803563_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803661_1804612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804649_1805237_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805254_1805638_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806997_1808290_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808424_1809465_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809562_1810579_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810846_1811494_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811619_1812378_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1812452_1813142_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1813159_1814044_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814040_1814820_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814846_1815524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815812_1816565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816683_1818084_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818107_1818506_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818681_1818882_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819020_1819749_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819882_1821298_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821301_1822165_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822177_1822927_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823109_1825125_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1825106_1825655_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1825731_1826451_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1826549_1827500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827648_1827987_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828044_1828206_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828237_1828438_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828703_1831277_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1831347_1833921_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836447_1836936_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837027_1838179_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838232_1839054_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839092_1840322_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840450_1840891_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1840835_1841015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1841001_1841952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1841948_1842422_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1842583_1843522_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1843523_1844732_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1844836_1845343_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1845345_1848207_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1848196_1849162_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1849221_1851216_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1851314_1852265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1903514	1962784	4102255	protease,transposase,tRNA	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1903514_1904465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904589_1905399_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1905454_1905613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1905599_1906550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1907823_1909041_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1910097_1911000_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1911076_1911949_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1912079_1912448_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1912505_1913552_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1913747_1915004_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1915008_1916346_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1916495_1917452_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1917554_1918487_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1918602_1918923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1918924_1919275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1919322_1920897_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1920949_1921894_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1921911_1922742_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1922734_1924369_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1924365_1925721_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1926627_1928205_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1928208_1929483_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1929580_1929955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1931670_1932804_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1932841_1933447_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1933443_1934262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1934333_1936958_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1936944_1937199_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1937265_1937847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1938150_1938411_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1938576_1939200_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1939199_1939973_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1939969_1941178_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1941203_1941677_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1941750_1942701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1942799_1943750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1943848_1945198_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1945963_1946719_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1946811_1949694_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1950016_1950442_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1950469_1951618_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1951614_1952121_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1952127_1953423_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1953463_1954768_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1954769_1955408_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1955410_1956571_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1956597_1957953_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1957956_1959027_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1959165_1959402_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1959489_1960596_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1960561_1961866_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1961884_1962784_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	1973024	2030521	4102255	transposase	Staphylococcus_phage(16.67%)	58	NA	NA
WP_005013747.1|1973024_1973975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1973961_1974162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1974174_1975260_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1975275_1976037_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1976033_1976957_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1977055_1977580_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1977588_1978332_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1978427_1978667_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1978680_1978833_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1978918_1980409_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1980500_1981439_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1981435_1981612_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1981614_1982277_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1983898_1984042_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1984038_1985013_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1985049_1985193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1985179_1986130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1986126_1987401_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1987498_1988698_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1988694_1989348_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1989344_1990781_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1990768_1991128_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1992100_1993051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1994096_1995962_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1996219_1997740_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1997827_1998478_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1999426_2000722_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2000743_2001628_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2001726_2002602_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2002591_2002948_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2003021_2004053_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2004182_2004362_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2004459_2004984_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2004994_2005831_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2005943_2006315_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2006311_2006863_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2006878_2008570_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2008618_2009299_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2009546_2010011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2010180_2011110_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2011122_2011770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2011843_2013661_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_077093446.1|2013744_2014695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2015199_2015361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2015347_2016298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2016316_2016664_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2016692_2018132_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2018150_2018546_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2018720_2019329_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2019341_2020160_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2020111_2021086_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2021114_2022176_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2022172_2024389_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2024402_2024861_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2025018_2025363_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2025519_2026425_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2026511_2027525_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2029504_2030521_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2046071	2110440	4102255	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2046071_2047022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2047008_2047200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2047243_2048194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2048292_2049258_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2049395_2050295_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2052889_2054377_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2054387_2055584_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2055656_2056976_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2056972_2057848_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2057878_2059048_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2059044_2059359_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2059380_2060103_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2060102_2060921_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2060925_2061453_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2061458_2062724_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2063073_2064213_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2064290_2065163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2066033_2066984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2066943_2067579_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2067938_2069261_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2069489_2070401_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2071825_2072398_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2072437_2074267_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2074229_2075288_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2075325_2075787_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2075871_2076618_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2078108_2081339_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2081405_2082737_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2082989_2083364_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2083466_2084645_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2084655_2085246_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2085356_2086163_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2086188_2086983_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2087983_2088958_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2089116_2089629_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2089785_2090757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2092501_2093308_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2093304_2094441_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2094556_2095321_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2095434_2096205_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2096289_2097501_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2097549_2097924_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2098024_2099287_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2099283_2100141_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2100313_2101315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2101766_2102717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2104232_2105432_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2105800_2106037_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2106100_2106268_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2106381_2108277_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2108440_2109391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2109489_2110440_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2296908	2358256	4102255	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2296908_2297859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2297975_2298695_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2298867_2299854_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2299854_2300337_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2300340_2301624_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2301620_2302559_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2302555_2304265_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2304274_2305522_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2307132_2308422_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2309559_2310333_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2310994_2311738_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2311812_2312553_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2312748_2313585_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2313635_2314406_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2314455_2315508_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2315504_2316131_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2316127_2317174_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2317340_2318357_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2318455_2319406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2322146_2323436_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2323554_2324025_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2324035_2325244_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2325390_2325855_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2325878_2326829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2327813_2328587_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2328583_2329582_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2329666_2330443_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2330598_2332266_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2332583_2333708_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2333834_2334458_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2334454_2336356_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2336404_2337199_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2337211_2338213_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2338209_2338716_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2338708_2339557_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2339654_2340197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2340240_2341191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2341346_2341673_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2341669_2341954_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2341950_2342430_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2342426_2344055_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2344051_2344396_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2344395_2347329_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2348487_2349438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2349536_2349833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2349939_2350857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2350861_2351575_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2351588_2352560_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2354279_2354660_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2354663_2355851_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2356289_2357012_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2357305_2358256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2379047	2450201	4102255	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2379047_2379998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2380550_2382176_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2382225_2383260_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2383262_2384609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2384605_2386120_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2386110_2387121_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2387594_2388536_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2388544_2389513_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2391052_2392021_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2392198_2393188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2393234_2393993_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2394182_2394920_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2394870_2395032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|2395018_2395969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2396153_2396936_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2396929_2397631_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2397870_2398473_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2399657_2399813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2399799_2400750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2400746_2402303_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2402295_2403069_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2403127_2404078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2404159_2405335_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2405348_2407406_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2407402_2408428_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2408439_2409729_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2409751_2410849_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2410845_2411736_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2411732_2413817_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2413848_2415018_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2415059_2415800_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2415799_2416570_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2417425_2418211_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2418237_2420322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2420489_2422445_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2422768_2423269_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2423367_2424894_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2425031_2425919_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2425933_2426887_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2426938_2429029_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2429044_2429431_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2432124_2432928_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2434221_2435124_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2435188_2435965_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2436286_2437336_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2437459_2439130_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2439134_2439929_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2440027_2440978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2440997_2441903_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2441980_2442679_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2442838_2443783_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2443792_2445283_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2445279_2446347_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2446410_2447823_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2448008_2449229_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2449250_2450201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2534400	2585572	4102255	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2534400_2535351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2535449_2536220_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2536216_2536888_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2536884_2537526_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2537538_2538459_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2538619_2539780_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2539821_2540772_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2541370_2541595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2541759_2543454_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2543575_2543845_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2543960_2544359_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2544369_2545326_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2545462_2546008_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2546028_2547978_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2548365_2549142_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2549147_2549540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2549961_2550912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2550908_2552006_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2552037_2552988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2554769_2556011_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2556022_2556796_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2556822_2557773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2557871_2558654_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2558742_2559969_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2560694_2562080_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2562098_2562704_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2562700_2564557_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2564553_2565354_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2565368_2566562_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2566629_2567604_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2567726_2568950_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2569060_2571265_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2571559_2572219_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2572226_2572433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2572771_2573527_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2573542_2573704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2573797_2574313_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2574585_2574903_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2575090_2575339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2575617_2576973_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2577019_2578399_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2578461_2579094_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2579093_2581454_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2581495_2582455_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2582441_2583128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2583124_2583457_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2583572_2584523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2584621_2585572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2683867	2724537	4102255	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
WP_010929591.1|2683867_2684818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684928_2685111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685210_2685807_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685990_2687082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687581_2687992_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2688050_2688392_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2688397_2690815_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690827_2691850_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691924_2692284_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692299_2692497_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692832_2693783_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2693978_2694428_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694424_2695375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2695361_2695508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2695485_2696934_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2697048_2697330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2697282_2697447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697433_2698384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698628_2699342_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699464_2699692_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699986_2700625_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2700697_2701768_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701764_2702715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703130_2703655_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703658_2703928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704126_2705188_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705271_2706906_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706907_2707711_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707739_2708699_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708702_2710217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710253_2711258_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711689_2712160_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712195_2712807_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712837_2713461_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713541_2715074_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2715108_2716350_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716393_2717425_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717421_2718591_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2718584_2719265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2719426_2720269_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720431_2721403_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721574_2722453_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722475_2723546_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723586_2724537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2780002	2852872	4102255	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2780002_2780419_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780529_2781162_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781190_2781634_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781655_2782747_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2782801_2783602_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783737_2784358_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2784497_2784971_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786110_2787061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787057_2794719_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794959_2799006_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799318_2799900_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799896_2801195_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801274_2802303_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2802226_2802577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2802563_2803514_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803510_2804461_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804777_2805383_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2805436_2806750_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806824_2807295_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807294_2808083_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808093_2809746_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809833_2810784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811945_2812452_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812448_2813213_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2813228_2813513_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813577_2814567_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814738_2815668_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815639_2816326_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2816359_2816905_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816949_2818215_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818211_2819114_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2820295_2821240_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2821334_2822852_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822893_2824522_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824629_2825511_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828623_2828998_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829022_2829361_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2829404_2831039_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831077_2832424_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2832531_2833953_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834022_2834607_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834709_2835660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835794_2836901_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836911_2838009_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838153_2839359_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839365_2839887_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2839883_2840375_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840371_2840623_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840603_2841089_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841224_2844686_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2844682_2845588_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845597_2846029_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846275_2846779_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2846790_2848257_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848331_2849207_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849203_2850211_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850678_2850984_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851074_2851665_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851855_2852872_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2856015	2922825	4102255	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2856015_2856966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857064_2858015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858011_2858806_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858837_2859542_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859616_2860417_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860413_2860821_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860817_2861459_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2861451_2863473_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864712_2866044_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866040_2866991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868697_2868964_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869671_2870010_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874562_2875165_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875261_2876551_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876608_2877340_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877336_2878140_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878136_2879225_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879221_2880151_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880299_2881445_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881466_2882417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882747_2886569_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886725_2887394_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887398_2889072_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889090_2890410_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2890414_2892766_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2892785_2894954_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2894950_2900140_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900229_2900544_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900771_2901017_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901111_2901630_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901729_2902935_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903050_2904448_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904564_2905143_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905215_2906607_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906774_2907725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2908005_2908626_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908622_2909036_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909032_2910076_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910131_2910320_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910329_2911094_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911184_2911841_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911932_2912691_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912716_2914318_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914518_2915523_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915623_2915887_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2916004_2916781_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917371_2918322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920705_2921818_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921874_2922825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	2953211	2992400	4102255	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2953211_2954162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2954148_2954394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2954282_2955179_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957456_2959682_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959846_2960935_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960891_2961545_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961592_2962390_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962921_2963872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963952_2965101_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965157_2966108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2966094_2966313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2966206_2966512_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966540_2966975_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966976_2968221_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968217_2968928_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968942_2969854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970216_2970621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970617_2971076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971082_2971991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971987_2972854_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972840_2973668_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973678_2974806_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975883_2977122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977163_2978426_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978432_2979185_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979236_2979422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979697_2980162_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980193_2980853_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980997_2983106_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983102_2984053_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984156_2984777_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984880_2985621_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986755_2987880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987925_2988294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988535_2989486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990521_2991064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2991256_2991463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991449_2992400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	3375855	3496100	4102255	transposase,tRNA	Acinetobacter_phage(20.0%)	103	NA	NA
WP_023995489.1|3375855_3376806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3377210_3377855_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3377879_3378464_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3378564_3379182_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3379184_3380900_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3380896_3381205_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3381221_3381857_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3381883_3382186_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3382286_3383141_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3383328_3383553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3383722_3383995_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3384412_3384820_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3385189_3385984_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3386084_3387320_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3387388_3388405_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3388401_3389793_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3389789_3390986_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3390982_3392521_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3392517_3393777_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3395717_3396668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3396654_3396831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3397434_3398529_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3398521_3399856_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3399809_3400493_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3400518_3401682_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3401678_3402680_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3402679_3403552_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3403548_3404298_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3404294_3405086_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3405082_3406222_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3406530_3407283_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3407316_3408099_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3408102_3408492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3409631_3410495_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3410530_3411619_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3411615_3412566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3412552_3412966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3412919_3415898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3416824_3417703_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_157737574.1|3418606_3418783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929956.1|3418769_3419720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3420700_3421651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421647_3422115_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422157_3422928_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3422948_3423749_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423759_3425169_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425263_3426049_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426288_3427305_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427412_3427805_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427942_3428623_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3428627_3429626_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429694_3430645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3432149_3432851_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3432850_3434275_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3435344_3436685_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3436800_3438564_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438675_3439554_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439666_3440482_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440485_3440737_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440821_3441838_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3442168_3442390_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444750_3445668_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3446165_3447374_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3447453_3449025_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3449142_3450078_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3450266_3451211_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3451279_3451495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3451778_3457496_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457501_3458629_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458684_3459311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3459582_3460599_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460694_3461405_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461401_3462391_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3462522_3464118_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464120_3464858_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3465013_3465886_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3466154_3467375_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467371_3468031_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3468102_3468735_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468764_3469283_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469293_3470403_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470449_3471304_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471305_3472208_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473430_3474381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3476137_3477127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3477302_3478091_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3478087_3479119_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3479137_3479701_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479756_3481277_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481540_3482245_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3482252_3482990_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3483095_3483470_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483512_3484802_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484798_3485968_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485964_3486804_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486863_3487799_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487811_3488762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488860_3489823_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489854_3490214_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490338_3491241_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491242_3493015_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3493049_3493826_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3495149_3496100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	3511038	3569111	4102255	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3511038_3511989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3512117_3513251_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3513294_3514200_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3514202_3515903_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515899_3516820_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516827_3517805_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517863_3518898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3520872_3521109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3521235_3522099_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3522187_3523009_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3523088_3523826_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3523822_3524815_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524928_3525591_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525635_3526784_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929956.1|3529107_3530058_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3530398_3531349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3531447_3532398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532694_3533192_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3533234_3535010_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3535056_3535884_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535890_3536625_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537794_3538589_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538878_3539469_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539502_3540831_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540905_3542051_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3542162_3543161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3543123_3543558_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3545074_3545959_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545955_3547161_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3547157_3548018_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3548130_3549921_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3549961_3550627_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550627_3550936_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3551101_3552388_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3553821_3554772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556723_3557938_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3558043_3559033_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3559029_3559638_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559650_3560280_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3560276_3560897_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560928_3561720_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3562562_3563027_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3563045_3563972_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3564025_3565312_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3566242_3567115_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3567111_3568062_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3568160_3569111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP016964	Bordetella pertussis strain D717, complete genome	4102255	4001323	4066235	4102255	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4001323_4001809_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4001897_4002035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4002027_4003008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4003274_4004084_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4004123_4004804_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4004797_4005256_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4005267_4005630_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4005712_4006396_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4006451_4006760_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4006778_4007093_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4007089_4009564_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4009571_4010963_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4010959_4011145_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4011123_4011825_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4011821_4012643_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4012623_4013748_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4013740_4014760_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4014965_4016000_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4016100_4016892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4016974_4017349_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4017326_4018736_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4018728_4020111_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4020445_4022050_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4022085_4023099_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4023109_4024036_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4024426_4025377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025546_4026773_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026972_4027839_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027831_4028794_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028894_4029845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029943_4030894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030992_4031943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031939_4033433_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033429_4036537_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036533_4039602_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039598_4040849_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4041029_4041791_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4041823_4042474_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4042476_4043316_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043556_4044300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044382_4044730_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044827_4045670_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045714_4046602_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046628_4046817_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046914_4048372_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048358_4049885_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049903_4050371_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050370_4051393_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051513_4052254_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052308_4053409_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053410_4054601_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054720_4055737_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056055_4056727_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056723_4057632_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057843_4058491_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4062342_4063419_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063429_4064239_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064328_4065102_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4065121_4065298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4065284_4066235_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
