The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	0	70036	4103196	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	77634	136108	4103196	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	164894	225405	4103196	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169128_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174136_174316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	233337	286925	4103196	protease,transposase,tRNA	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236258_236432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	390858	448367	4103196	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391795_391963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400019_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401028_401172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403585_404827_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411331_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417526_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	591470	652662	4103196	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592896_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594805_595297_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595315_596389_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596435_597539_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597614_598235_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598255_598765_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598819_599071_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599134_600268_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600275_600662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600658_603178_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603606_603945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603941_604448_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604509_605310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605420_606362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606455_607991_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609670_611521_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611524_612358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612357_613299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|613550_614546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614663_616952_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617258_618167_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618221_619187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619261_620923_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|620919_621705_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621853_622804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623502_623886_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623943_624546_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624563_624965_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625098_625992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625988_626570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627364_628099_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628139_629189_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629336_629915_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630301_631279_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631372_635767_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635967_636816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636974_637787_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637842_638793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|638779_638944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|638891_639692_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639753_640137_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640148_641582_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641788_642118_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|642120_642789_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643052_643973_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644019_644232_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644254_644677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|644693_645794_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645890_647408_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647483_648323_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648344_649226_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649307_650402_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650695_651646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651720_652662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	657980	704177	4103196	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(17.39%)	53	NA	NA
WP_003814219.1|657980_659012_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659052_659292_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659361_660951_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660950_661499_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661579_662152_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662170_663082_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663155_664124_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664246_665320_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665324_667145_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667221_668172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995786.1|668158_668320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446132.1|668260_668596_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668729_669380_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669401_670820_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670889_671645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671613_672372_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672382_673264_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673280_673988_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673990_674749_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674958_676701_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676693_677218_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677257_678052_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678219_679293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679391_680342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|680593_680806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680871_681483_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|681962_682283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|682275_682974_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|682988_683210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683227_684178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|684853_685303_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|685289_686567_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686569_687988_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688016_689072_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689077_689320_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689442_690045_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690473_691424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|691441_692089_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|692098_692350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692412_692895_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692896_693097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693096_693492_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693488_693887_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693883_694306_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694313_694814_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695068_695587_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695596_695926_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695943_696234_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696259_698872_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698881_699241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699308_699842_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699838_700228_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700220_704177_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	710343	764273	4103196	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|710343_712074_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712126_712555_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712557_713238_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713237_713696_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713732_714707_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714723_716040_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716071_716569_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716655_717345_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717344_718394_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718390_719185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719353_719704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719679_720237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|721161_721380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|721366_722317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|724595_725684_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725686_727129_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727233_728379_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728410_729208_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729232_730792_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730788_733161_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733270_734374_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734373_735066_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735209_735911_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735895_736273_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737004_737955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|737941_738085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|738114_738987_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739327_739546_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739585_740965_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741006_742404_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742443_744096_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744099_744984_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744983_745925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746003_747623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747789_748605_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748672_749242_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749242_750193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750847_751945_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751978_753244_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753401_754352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754595_755186_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755201_757646_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757765_758737_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758868_759393_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759352_760303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760524_762720_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762792_763200_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|763147_763336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|763322_764273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	886861	1027429	4103196	transposase	Bacillus_phage(11.11%)	118	NA	NA
WP_023994644.1|886861_887878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895512_897744_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903463_904414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904410_905130_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905250_907410_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907500_907770_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907858_908065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908063_908591_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908609_909389_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909556_910573_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910645_911137_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911147_912863_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914026_914977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|914973_916824_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|917951_918104_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|918212_918380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920084_921386_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923530_926419_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930384_931260_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931285_932341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|935600_935738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|935724_936675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938655_938871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939428_940379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940375_940759_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930067.1|940813_942631_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942777_943605_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943650_944631_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944627_944840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944836_946018_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946181_946916_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946917_949530_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949665_951579_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952194_952605_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952702_953788_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953886_954837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954833_955808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955932_956844_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_005012067.1|956942_957893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|958169_958562_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_124740670.1|958450_958705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|958691_959642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|959671_959854_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|960626_961808_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962023_962701_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_077274086.1|962697_963471_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930094.1|963548_964130_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|964500_967182_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|967181_968315_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|968307_969393_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|969479_970379_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970375_971704_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|971718_972390_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_003821510.1|972562_974293_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974294_974654_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|974845_975160_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975202_976423_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976419_977361_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977357_978347_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978381_978966_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979064_980015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980095_981007_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981067_982213_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982232_983147_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983218_983968_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|983967_984897_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985140_986967_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987049_987691_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|987880_988915_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|990751_991816_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|992613_993522_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995009_996284_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996437_996818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|996825_997698_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998003_998384_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|998594_999320_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999415_1000366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000470_1001520_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001657_1002674_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004182_1004755_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004814_1005546_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005597_1006515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007322_1010502_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_095586262.1|1010498_1011881_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011950_1012202_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1012347_1012998_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1013148_1015263_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015338_1016190_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016186_1016813_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016809_1018564_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018856_1021562_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021574_1023236_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023248_1025039_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025260_1026436_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_023997698.1|1026478_1027429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	1039036	1087974	4103196	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_023853531.1|1039036_1040170_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040262_1040415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040446_1040995_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041013_1041499_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041676_1042615_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042617_1042935_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042980_1043925_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045605_1046256_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046309_1046645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046641_1047502_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047518_1047800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047873_1048137_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048380_1049331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049629_1050367_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050802_1051126_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051160_1051721_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051841_1052717_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052729_1053677_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053778_1054072_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054098_1056156_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056170_1056671_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056744_1058451_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059314_1060367_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060419_1060809_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060817_1061450_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1061549_1062566_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063396_1064404_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064400_1066044_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1066040_1066943_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067068_1067542_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067531_1068554_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068550_1069978_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070915_1071932_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072264_1073200_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073249_1075130_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075196_1075541_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075685_1076822_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076818_1077892_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078049_1079486_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079576_1080218_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080553_1081570_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1081902_1084650_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1084716_1086138_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086401_1087118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087202_1087520_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087560_1087974_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 11
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	1097042	1159581	4103196	transposase,tRNA	Planktothrix_phage(18.18%)	49	NA	NA
WP_005013747.1|1097042_1097993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098360_1099137_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099181_1100039_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100060_1101077_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101211_1102252_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102446_1104528_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104763_1106257_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106487_1107282_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107502_1108861_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108857_1109700_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109718_1111605_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1111842_1112475_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112493_1113096_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1113099_1113261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1113247_1114198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1115000_1115801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1115844_1116831_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116970_1117984_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117980_1118931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119043_1119502_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119538_1120852_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120869_1121241_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121237_1122701_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_003812697.1|1122793_1123570_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_076879621.1|1123551_1126431_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1126613_1127564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127731_1128556_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128555_1129434_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130338_1131454_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930187.1|1131461_1132277_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930188.1|1132273_1134139_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134217_1134850_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134846_1135149_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135191_1136712_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136718_1137474_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137503_1138608_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138710_1140411_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140392_1141370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141379_1142660_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142652_1143348_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143381_1144209_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144490_1147721_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930195.1|1147989_1148166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930196.1|1148456_1152383_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154282_1156079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156078_1157047_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157116_1157962_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158029_1158584_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158630_1159581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	1382431	1448931	4103196	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1382431_1383382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383447_1383627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1383743_1384466_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384485_1385631_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386538_1387489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1387676_1388879_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1388875_1389634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1390027_1390660_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1391615_1394216_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1394203_1397623_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1397630_1398536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1398674_1399253_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1399249_1400161_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1400174_1400855_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1401056_1403096_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1403114_1404101_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1404126_1404924_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1404920_1406114_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1406110_1407073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1407090_1408131_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1408118_1408727_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1410315_1411311_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1411330_1412509_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1412519_1413437_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1413492_1414443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_095586263.1|1414541_1415312_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1415308_1415989_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1416055_1416844_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929632.1|1417090_1418107_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1418412_1419567_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1424072_1424555_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1424572_1424863_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1424989_1425700_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1425883_1426291_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1426303_1426723_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1426770_1427475_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1427540_1428962_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1429000_1429765_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1429808_1430594_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1430593_1431283_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1431285_1432419_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1432436_1433459_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1433528_1435175_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1435208_1436741_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1436819_1438640_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1438760_1440380_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1440558_1442001_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1442217_1443234_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1443280_1444069_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1444091_1444361_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1444377_1445169_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1445180_1445522_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1445532_1446033_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1446025_1447036_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1447038_1447611_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1447980_1448931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	1794989	1843004	4103196	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1794989_1795940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796038_1798639_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798745_1799750_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799858_1801199_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801239_1802268_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802463_1803009_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803005_1803566_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803664_1804615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804652_1805240_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805257_1805641_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1807000_1808293_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808427_1809468_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809565_1810582_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810849_1811497_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811622_1812381_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1812455_1813145_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1813162_1814047_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814043_1814823_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814849_1815527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815815_1816568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816686_1818087_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818110_1818509_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818684_1818885_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819023_1819752_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819885_1821301_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821304_1822168_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822180_1822930_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823112_1825128_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1825109_1825658_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1825734_1826454_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1826552_1827503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1827601_1828552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828700_1829039_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1829096_1829258_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829289_1829490_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829755_1832329_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1832399_1834973_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837499_1837988_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1838079_1839231_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839284_1840106_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1840144_1841374_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841502_1841943_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1841887_1842067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1842053_1843004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	1904566	1963836	4103196	protease,transposase,tRNA	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1904566_1905517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905641_1906451_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1906506_1906665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1906651_1907602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1908875_1910093_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1911149_1912052_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1912128_1913001_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1913131_1913500_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1913557_1914604_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1914799_1916056_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1916060_1917398_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1917547_1918504_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1918606_1919539_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1919654_1919975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1919976_1920327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1920374_1921949_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1922001_1922946_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1922963_1923794_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1923786_1925421_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1925417_1926773_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1927679_1929257_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1929260_1930535_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1930632_1931007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1932722_1933856_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1933893_1934499_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1934495_1935314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1935385_1938010_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1937996_1938251_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1938317_1938899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939202_1939463_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1939628_1940252_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1940251_1941025_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941021_1942230_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1942255_1942729_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1942802_1943753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1943851_1944802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1944900_1946250_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1947015_1947771_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1947863_1950746_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1951068_1951494_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1951521_1952670_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1952666_1953173_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1953179_1954475_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1954515_1955820_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1955821_1956460_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1956462_1957623_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1957649_1959005_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1959008_1960079_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1960217_1960454_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1960541_1961648_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1961613_1962918_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1962936_1963836_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	1974076	2031573	4103196	transposase	Staphylococcus_phage(16.67%)	58	NA	NA
WP_005013747.1|1974076_1975027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1975125_1976076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1976062_1976263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1976275_1977361_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1977376_1978138_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1978134_1979058_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1979156_1979681_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1979689_1980433_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1980528_1980768_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1980781_1980934_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1981019_1982510_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1982601_1983540_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1983536_1983713_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1983715_1984378_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1985999_1986143_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1986139_1987114_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1987150_1987294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1987280_1988231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1988227_1989502_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1989599_1990799_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1990795_1991449_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1991445_1992882_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1992869_1993229_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930768.1|1995148_1997014_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997271_1998792_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998879_1999530_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000478_2001774_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001795_2002680_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002778_2003654_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003643_2004000_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2004073_2005105_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005234_2005414_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005511_2006036_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006046_2006883_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006995_2007367_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007363_2007915_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007930_2009622_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009670_2010351_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010598_2011063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011232_2012162_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012174_2012822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012895_2014713_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014796_2015747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2016251_2016413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2016399_2017350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2017368_2017716_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2017744_2019184_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2019202_2019598_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2019772_2020381_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2020393_2021212_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2021163_2022138_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2022166_2023228_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2023224_2025441_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2025454_2025913_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2026070_2026415_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2026571_2027477_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2027563_2028577_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930525.1|2030556_2031573_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2047123	2111492	4103196	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2047123_2048074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2048060_2048252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2048295_2049246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049344_2050310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050447_2051347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053941_2055429_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055439_2056636_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056708_2058028_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058024_2058900_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2058930_2060100_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060096_2060411_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060432_2061155_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061154_2061973_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061977_2062505_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2062510_2063776_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064125_2065265_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065342_2066215_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067085_2068036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067995_2068631_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068990_2070313_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2070541_2071453_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2072877_2073450_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073489_2075319_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075281_2076340_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076377_2076839_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076923_2077670_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079160_2082391_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082457_2083789_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084041_2084416_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084518_2085697_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085707_2086298_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086408_2087215_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2087240_2088035_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089035_2090010_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090168_2090681_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090837_2091809_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093553_2094360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2094356_2095493_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2095608_2096373_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096486_2097257_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2097341_2098553_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098601_2098976_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2099076_2100339_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100335_2101193_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101365_2102367_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102818_2103769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105284_2106484_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106852_2107089_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107152_2107320_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2107433_2109329_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2109492_2110443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110541_2111492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2297960	2359308	4103196	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297960_2298911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299027_2299747_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299919_2300906_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300906_2301389_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301392_2302676_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302672_2303611_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303607_2305317_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305326_2306574_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308184_2309474_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310611_2311385_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312046_2312790_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312864_2313605_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313800_2314637_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314687_2315458_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315507_2316560_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316556_2317183_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2317179_2318226_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318392_2319409_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319507_2320458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323198_2324488_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2324606_2325077_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325087_2326296_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326442_2326907_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326930_2327881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328865_2329639_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329635_2330634_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330718_2331495_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2331650_2333318_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2333635_2334760_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334886_2335510_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335506_2337408_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337456_2338251_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338263_2339265_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339261_2339768_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2339760_2340609_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340706_2341249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341292_2342243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342398_2342725_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2342721_2343006_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2343002_2343482_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343478_2345107_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345103_2345448_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345447_2348381_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349539_2350490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350588_2350885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350991_2351909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351913_2352627_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352640_2353612_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355331_2355712_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355715_2356903_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357341_2358064_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358357_2359308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2380099	2451200	4103196	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2380099_2381050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381602_2383228_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383277_2384312_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384314_2385661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2385657_2387172_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387162_2388173_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388646_2389588_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389596_2390565_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392104_2393073_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393250_2394240_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394286_2395045_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395234_2395972_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2395922_2396084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2396070_2397021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397205_2397988_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397981_2398683_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398922_2399525_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2400709_2400865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2400851_2401802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401798_2403355_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403347_2404121_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404179_2405130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405211_2406387_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_023999553.1|2406400_2408278_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408401_2409427_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409438_2410728_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2410750_2411848_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2411844_2412735_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2412731_2414816_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2414847_2416017_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416058_2416799_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2416798_2417569_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2418424_2419210_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419236_2421321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421488_2423444_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2423767_2424268_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424366_2425893_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426030_2426918_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426932_2427886_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2427937_2430028_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430043_2430430_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433123_2433927_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435220_2436123_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436187_2436964_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437285_2438335_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438458_2440129_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440133_2440928_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441026_2441977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2441996_2442902_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2442979_2443678_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2443837_2444782_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2444791_2446282_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446278_2447346_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447409_2448822_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449007_2450228_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450249_2451200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2535399	2586571	4103196	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2535399_2536350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536448_2537219_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537215_2537887_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2537883_2538525_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538537_2539458_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539618_2540779_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2540820_2541771_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2542369_2542594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2542758_2544453_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544574_2544844_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2544959_2545358_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545368_2546325_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546461_2547007_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547027_2548977_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549364_2550141_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550146_2550539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2550960_2551911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551907_2553005_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553036_2553987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2555768_2557010_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557021_2557795_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557821_2558772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558870_2559653_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559741_2560968_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561693_2563079_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563097_2563703_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563699_2565556_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565552_2566353_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566367_2567561_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567628_2568603_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568725_2569949_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570059_2572264_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572558_2573218_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573225_2573432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573770_2574526_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2574541_2574703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2574796_2575312_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575584_2575902_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2576089_2576338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576616_2577972_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2578018_2579398_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579460_2580093_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2580092_2582453_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582494_2583454_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583440_2584127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584123_2584456_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2584571_2585522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2585620_2586571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2684866	2725535	4103196	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2684866_2685817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685927_2686110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686209_2686806_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2686989_2688081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688580_2688991_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2689049_2689391_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2689396_2691814_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691826_2692849_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692923_2693283_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693298_2693496_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005012808.1|2693831_2694782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2694768_2694930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2694976_2695426_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695422_2696373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2696359_2696506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2696483_2697932_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2698046_2698328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2698280_2698445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698431_2699382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699626_2700340_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700462_2700690_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2700984_2701623_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2701695_2702766_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702762_2703713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704128_2704653_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704656_2704926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705124_2706186_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706269_2707904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707905_2708709_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708737_2709697_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709700_2711215_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711251_2712256_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712687_2713158_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713193_2713805_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713835_2714459_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714539_2716072_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2716106_2717348_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717391_2718423_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718419_2719589_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719582_2720263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720424_2721267_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721429_2722401_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722572_2723451_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723473_2724544_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724584_2725535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2781000	2853870	4103196	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2781000_2781417_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781527_2782160_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782188_2782632_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782653_2783745_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783799_2784600_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784735_2785356_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785495_2785969_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787108_2788059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788055_2795717_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2795957_2800004_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800316_2800898_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800894_2802193_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802272_2803301_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2803224_2803575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2803561_2804512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804508_2805459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805775_2806381_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806434_2807748_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807822_2808293_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808292_2809081_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809091_2810744_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810831_2811782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812943_2813450_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813446_2814211_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814226_2814511_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814575_2815565_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815736_2816666_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816637_2817324_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817357_2817903_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2817947_2819213_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819209_2820112_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821293_2822238_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822332_2823850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823891_2825520_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825627_2826509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829621_2829996_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830020_2830359_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830402_2832037_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832075_2833422_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833529_2834951_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835020_2835605_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835707_2836658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836792_2837899_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837909_2839007_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839151_2840357_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840363_2840885_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2840881_2841373_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841369_2841621_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841601_2842087_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842222_2845684_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2845680_2846586_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846595_2847027_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847273_2847777_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2847788_2849255_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849329_2850205_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850201_2851209_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851676_2851982_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852072_2852663_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852853_2853870_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2857013	2922774	4103196	protease,transposase	uncultured_Mediterranean_phage(28.57%)	48	NA	NA
WP_010931070.1|2857013_2857964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2857960_2858755_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858786_2859491_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859565_2860366_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860362_2860770_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860766_2861408_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2861400_2863422_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864661_2865993_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2865989_2866940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868646_2868913_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869620_2869959_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874511_2875114_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875210_2876500_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876557_2877289_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877285_2878089_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878085_2879174_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879170_2880100_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880248_2881394_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881415_2882366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882696_2886518_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886674_2887343_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887347_2889021_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889039_2890359_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2890363_2892715_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2892734_2894903_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2894899_2900089_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900178_2900493_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900720_2900966_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901060_2901579_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901678_2902884_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2902999_2904397_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904513_2905092_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905164_2906556_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906723_2907674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2907954_2908575_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908571_2908985_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2908981_2910025_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910080_2910269_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910278_2911043_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911133_2911790_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911881_2912640_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912665_2914267_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914467_2915472_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915572_2915836_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2915953_2916730_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917320_2918271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920654_2921767_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921823_2922774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	2953160	2992349	4103196	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2953160_2954111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2954097_2954343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2954231_2955128_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957405_2959631_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959795_2960884_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960840_2961494_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961541_2962339_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962870_2963821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963901_2965050_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965106_2966057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2966043_2966262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2966155_2966461_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966489_2966924_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966925_2968170_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968166_2968877_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968891_2969803_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970165_2970570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970566_2971025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971031_2971940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971936_2972803_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972789_2973617_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973627_2974755_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975832_2977071_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977112_2978375_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978381_2979134_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979185_2979371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979646_2980111_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980142_2980802_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980946_2983055_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983051_2984002_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984105_2984726_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984829_2985570_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986704_2987829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987874_2988243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988484_2989435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990470_2991013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2991205_2991412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991398_2992349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	3376795	3430536	4103196	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3376795_3377746_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378150_3378795_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378819_3379404_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379504_3380122_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380124_3381840_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381836_3382145_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3382161_3382797_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382823_3383126_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383226_3384081_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384268_3384493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384662_3384935_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385352_3385760_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386129_3386924_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387024_3388260_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388328_3389345_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3389341_3390733_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390729_3391926_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391922_3393461_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393457_3394717_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396657_3397608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3397594_3397771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3398374_3399469_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399461_3400796_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400749_3401433_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401458_3402622_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3402618_3403620_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403619_3404492_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404488_3405238_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405234_3406026_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406022_3407162_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3407470_3408223_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408256_3409039_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409042_3409432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3410571_3411435_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3411470_3412559_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412555_3413506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3413492_3413906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3413859_3416838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417764_3418643_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420591_3421542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421538_3422006_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422048_3422819_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3422839_3423640_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423650_3425060_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425154_3425940_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426179_3427196_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427303_3427696_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427833_3428514_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3428518_3429517_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429585_3430536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	3436691	3495991	4103196	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3436691_3438455_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438566_3439445_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439557_3440373_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440376_3440628_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440712_3441729_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3442059_3442281_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444641_3445559_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3446056_3447265_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3447344_3448916_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3449033_3449969_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3450157_3451102_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3451170_3451386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3451669_3457387_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457392_3458520_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458575_3459202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3459473_3460490_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460585_3461296_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461292_3462282_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3462413_3464009_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464011_3464749_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3464904_3465777_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3466045_3467266_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467262_3467922_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3467993_3468626_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468655_3469174_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469184_3470294_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470340_3471195_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471196_3472099_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473321_3474272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3476028_3477018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3477193_3477982_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_057056656.1|3477978_3479010_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	5.6e-73
WP_003815390.1|3479028_3479592_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479647_3481168_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481431_3482136_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3482143_3482881_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3482986_3483361_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483403_3484693_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484689_3485859_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485855_3486695_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486754_3487690_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487702_3488653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488751_3489714_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489745_3490105_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490229_3491132_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491133_3492906_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3492940_3493717_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3495040_3495991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	3510929	3570051	4103196	transposase,tRNA	Planktothrix_phage(12.5%)	48	NA	NA
WP_005012808.1|3510929_3511880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3512008_3513142_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3513185_3514091_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3514093_3515794_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515790_3516711_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516718_3517696_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517754_3518789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3520763_3521000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3521126_3521990_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3522078_3522900_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3522979_3523717_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3523713_3524706_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524819_3525482_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525526_3526675_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3528998_3529949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530322_3531273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_095586265.1|3531347_3532289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532387_3533338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533634_3534132_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534174_3535950_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3535996_3536824_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536830_3537565_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538734_3539529_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539818_3540409_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540442_3541771_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541845_3542991_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543102_3544101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544063_3544498_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546014_3546899_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546895_3548101_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548097_3548958_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549070_3550861_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3550901_3551567_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3551567_3551876_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552041_3553328_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554761_3555712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557663_3558878_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3558983_3559973_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3559969_3560578_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560590_3561220_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561216_3561837_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561868_3562660_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3563502_3563967_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3563985_3564912_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3564965_3566252_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567182_3568055_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568051_3569002_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569100_3570051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP016963	Bordetella pertussis strain D799, complete genome	4103196	4002264	4067176	4103196	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4002264_4002750_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002838_4002976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4002968_4003949_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004215_4005025_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005064_4005745_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005738_4006197_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006208_4006571_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006653_4007337_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007392_4007701_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007719_4008034_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008030_4010505_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010512_4011904_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011900_4012086_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012064_4012766_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012762_4013584_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013564_4014689_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014681_4015701_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4015906_4016941_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017041_4017833_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4017915_4018290_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018267_4019677_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019669_4021052_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021386_4022991_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4023026_4024040_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024050_4024977_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025367_4026318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026487_4027714_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027913_4028780_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028772_4029735_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029835_4030786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030884_4031835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031933_4032884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032880_4034374_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034370_4037478_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037474_4040543_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040539_4041790_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4041970_4042732_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042764_4043415_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043417_4044257_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044497_4045241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045323_4045671_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045768_4046611_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046655_4047543_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047569_4047758_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047855_4049313_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049299_4050826_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050844_4051312_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051311_4052334_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052454_4053195_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053249_4054350_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054351_4055542_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055661_4056678_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056996_4057668_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057664_4058573_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058784_4059432_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063283_4064360_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064370_4065180_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065269_4066043_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4066062_4066239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4066225_4067176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
