The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	0	71085	4104297	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|65116_65434_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	78683	137157	4104297	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|133731_134034_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	165942	226453	4104297	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|170176_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|175184_175364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|182382_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|196450_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|208219_209269_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|209265_210090_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220103_223046_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	234385	287972	4104297	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|237306_237480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|275149_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279585_279726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280703_281315_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|281473_282328_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282347_283730_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285888_287025_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287021_287972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	556357	615657	4104297	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|556357_557308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558631_559408_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559442_561215_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561216_562119_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562243_562603_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562634_563597_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563695_564646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564658_565594_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565653_566493_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566489_567659_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567655_568945_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568987_569362_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|569467_570205_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570212_570917_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571180_572701_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572756_573320_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573338_574370_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574366_575155_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575330_576320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578076_579027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580249_581152_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581153_582008_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582054_583164_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583174_583693_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583722_584355_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584426_585086_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|585082_586303_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586571_587444_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587599_588337_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852728.1|588339_589935_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590066_591056_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591052_591763_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591858_592875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593146_593773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593828_594956_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594961_600679_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|600962_601178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|601246_602191_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602379_603315_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603432_605004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605083_606292_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606789_607707_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610067_610289_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610619_611636_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611720_611972_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611975_612791_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612903_613782_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613893_615657_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	621812	675553	4104297	transposase	Salmonella_phage(33.33%)	50	NA	NA
WP_010930179.1|621812_622763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|622831_623830_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623834_624515_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624652_625045_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625152_626169_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626408_627194_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627288_628698_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628708_629509_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629529_630300_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630342_630810_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630806_631757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633705_634584_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635510_638489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|638442_638856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638842_639793_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639789_640878_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640913_641777_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642916_643306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643309_644092_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|644125_644878_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645186_646326_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646322_647114_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647110_647860_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647856_648729_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648728_649730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649726_650890_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650915_651599_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651552_652887_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652879_653974_+	CoA transferase	NA	NA	NA	NA	NA
WP_153302791.1|654577_654754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|654740_655691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657631_658891_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658887_660426_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660422_661619_-	MFS transporter	NA	NA	NA	NA	NA
WP_029443830.1|661615_663007_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663003_664020_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664088_665324_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665424_666219_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666588_666996_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667413_667686_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667855_668080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668267_669122_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669222_669525_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_015040527.1|669551_670187_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670203_670512_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670508_672224_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672226_672844_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672944_673529_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673553_674198_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674602_675553_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	724440	756249	4104297	protease,transposase,integrase,tRNA	Pseudomonas_phage(33.33%)	22	721739:721757	741627:741645
721739:721757	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_029443720.1|724440_725088_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725084_725867_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725939_727031_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727310_728438_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728779_729826_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729973_733093_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733094_736046_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736061_737273_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737269_737470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737456_738407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738423_738918_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738921_739179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853401.1|739203_740634_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|740715_741000_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741783_742734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741627:741645	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743152_745717_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745761_747615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747947_749519_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750960_751911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751996_752737_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752963_753911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755298_756249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1006201	1100238	4104297	transposase	Bacillus_virus(27.27%)	88	NA	NA
WP_005012067.1|1006201_1007152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007254_1007917_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008011_1008182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008534_1009536_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009538_1010735_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010755_1011559_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011639_1011936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011966_1012530_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012570_1013428_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013435_1014185_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014206_1015079_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015107_1015887_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015920_1016718_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|1018169_1019342_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|1019372_1019765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019758_1020619_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020622_1021585_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022361_1023051_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023911_1024862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025211_1026081_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026151_1026847_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026836_1027346_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027342_1028563_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028510_1029413_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|1030299_1031586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031624_1032998_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033036_1033738_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034036_1035026_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035126_1035588_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035603_1036152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036293_1037769_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037874_1038966_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038969_1039752_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039761_1040550_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041675_1042110_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042106_1043117_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043160_1044087_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044373_1044742_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044958_1045909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045953_1048380_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048428_1049121_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049193_1050393_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050410_1051316_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051431_1052361_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052386_1053733_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053760_1054510_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054523_1055306_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055498_1056449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|1056510_1057656_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058132_1058969_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059038_1060004_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060000_1060951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|1060937_1061144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061336_1061879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062914_1063865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064106_1064475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064520_1065645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066779_1067520_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067623_1068244_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068347_1069298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069294_1071403_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071547_1072207_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072238_1072703_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072978_1073164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073215_1073968_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073974_1075237_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075278_1076517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077594_1078722_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078732_1079560_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079546_1080413_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081779_1082184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082275_1083226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083595_1084507_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084521_1085232_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085228_1086473_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086474_1086909_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086937_1087243_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|1087136_1087355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1087341_1088292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088348_1089497_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_095585350.1|1089577_1090528_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091059_1091857_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091904_1092558_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092514_1093603_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093767_1095993_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098270_1099167_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|1099055_1099301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099287_1100238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1130624	1201594	4104297	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130624_1131575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131631_1132744_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135127_1136078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136668_1137445_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137562_1137826_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137926_1138931_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139131_1140733_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140758_1141517_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141608_1142265_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142355_1143120_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143129_1143318_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143373_1144417_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144413_1144827_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144823_1145444_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145724_1146675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146842_1148234_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148306_1148885_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149001_1150399_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150514_1151720_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151819_1152338_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152432_1152678_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152905_1153220_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153309_1158499_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158495_1160664_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|1160683_1163035_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|1163039_1164359_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164377_1166051_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166055_1166724_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166880_1170702_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171032_1171983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172004_1173150_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173298_1174228_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174224_1175313_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175309_1176113_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176109_1176841_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176898_1178188_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178284_1178887_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183439_1183778_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184485_1184752_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186458_1187409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187405_1188737_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|1189976_1191998_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191990_1192632_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192628_1193036_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193032_1193833_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193907_1194612_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194643_1195438_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1195434_1196385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1196483_1197434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197532_1197967_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198049_1200386_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200577_1201594_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1301814	1359025	4104297	transposase	Klosneuvirus(16.67%)	52	NA	NA
WP_010931070.1|1301814_1302765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306511_1307123_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307345_1308806_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308902_1310495_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|1310481_1310760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|1310818_1311106_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311107_1312448_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312543_1313233_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313245_1314676_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316400_1317222_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317232_1318804_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318832_1319810_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319836_1320640_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320636_1321431_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321438_1322674_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322666_1323101_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323850_1324801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325422_1327150_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327261_1328620_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1328740_1328926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1328912_1329863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329903_1330974_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1330996_1331875_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332046_1333018_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333180_1334023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334184_1334865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1334858_1336028_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1336024_1337056_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337099_1338341_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338375_1339908_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339988_1340612_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340642_1341254_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341289_1341760_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342191_1343196_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343232_1344747_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344750_1345710_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345738_1346542_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346543_1348178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348261_1349323_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349521_1349791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349794_1350319_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1350734_1351685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|1351681_1352752_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352824_1353463_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353757_1353985_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354107_1354821_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355065_1356016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|1356002_1356167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|1356119_1356401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356515_1357964_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_153302788.1|1357947_1358088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1358074_1359025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1449258	1501411	4104297	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1449258_1450209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1450195_1450363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1450375_1450729_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450741_1451104_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451145_1451571_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451773_1453030_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453228_1454209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454358_1455600_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455698_1456649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456657_1457353_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460174_1460774_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460784_1462950_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462973_1464758_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464757_1464847_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465541_1465814_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465813_1467880_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467876_1468827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468925_1469876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469991_1470324_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470320_1471007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470993_1471953_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1471994_1474355_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474354_1474987_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1475049_1476429_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476475_1477831_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1478109_1478358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478545_1478863_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479135_1479651_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479744_1479906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1479921_1480677_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481015_1481222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481229_1481889_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482183_1484388_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484498_1485722_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485844_1486819_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486886_1488080_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488094_1488895_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488891_1490748_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490744_1491350_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491368_1492754_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493479_1494706_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494794_1495577_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495675_1496626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496652_1497426_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497437_1498679_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500460_1501411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1547093	1613422	4104297	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1547093_1548044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548050_1549163_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549849_1551052_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551255_1553916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553928_1557333_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558000_1560226_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560272_1560599_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560649_1561258_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561356_1562307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562376_1563141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563137_1563737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1563840_1564686_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564751_1565378_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565374_1566325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1566311_1566500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1566423_1567545_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567525_1568527_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568632_1570144_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570140_1571445_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571556_1572117_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572384_1572939_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573394_1573610_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573864_1576462_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576458_1577646_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578304_1578919_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579007_1580135_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580146_1581052_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1581802_1581958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1581944_1582895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583076_1583829_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583897_1584557_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584553_1585282_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585294_1587574_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587598_1587802_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1587843_1588491_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1588611_1589529_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589525_1590239_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590476_1591247_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591251_1591851_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592095_1593586_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593644_1593929_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1593925_1594054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1594066_1594222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594494_1595421_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595557_1596298_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596464_1597841_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598022_1598928_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600579_1602382_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602499_1603150_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603248_1604199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604220_1605441_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605626_1607039_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607102_1608170_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1608166_1609657_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609666_1610611_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610770_1611469_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611546_1612452_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612471_1613422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1649371	1704962	4104297	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1649371_1650322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650380_1651154_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651146_1652703_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652699_1653650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1653636_1653792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1654976_1655579_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655818_1656520_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656513_1657296_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657480_1658431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1658417_1658579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1658529_1659267_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659456_1660215_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660261_1661251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661428_1662397_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663936_1664905_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664913_1665855_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666328_1667339_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667329_1668844_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668840_1670187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670189_1671224_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671273_1672899_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673451_1674402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674506_1675454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675507_1677322_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677314_1677989_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678118_1681193_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681206_1681506_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681820_1682444_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682687_1683557_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683534_1684479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1684564_1685536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1685603_1686377_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686373_1687570_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687600_1688551_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688772_1689462_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689526_1690282_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690333_1691326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691335_1692289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692404_1693367_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694768_1695197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695193_1696144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696437_1697160_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697598_1698786_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698789_1699170_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700889_1701861_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701874_1702588_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702592_1703510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703616_1703913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704011_1704962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	1937726	2007378	4104297	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1937726_1940384_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940461_1941664_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941660_1942173_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1942295_1942634_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943009_1943960_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944058_1945009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1945172_1947068_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1947181_1947349_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947412_1947649_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948017_1949217_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950732_1951683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952134_1953136_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953308_1954166_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954162_1955425_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955525_1955900_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|1955948_1957160_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957244_1958015_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958128_1958893_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|1959008_1960145_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960141_1960948_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962692_1963664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963820_1964333_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964491_1965466_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966466_1967261_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967286_1968093_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|1968203_1968794_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968804_1969983_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970085_1970460_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970712_1972044_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972110_1975341_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976831_1977578_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977662_1978124_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978161_1979220_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979182_1981012_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981051_1981624_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|1983048_1983960_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|1984188_1985511_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985870_1986506_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986465_1987416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988286_1989159_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989236_1990376_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|1990725_1991991_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991996_1992524_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992528_1993347_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993346_1994069_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994090_1994405_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|1994401_1995571_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995601_1996477_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996473_1997793_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997865_1999062_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999072_2000560_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003154_2004054_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004191_2005157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005255_2006206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2006249_2006441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2006427_2007378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2018874	2068270	4104297	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018874_2019825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020962_2021259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021433_2022786_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022928_2023945_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025924_2026938_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2027024_2027930_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028086_2028431_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028588_2029047_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029060_2031277_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031273_2032335_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032363_2033338_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033289_2034108_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034120_2034729_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2034903_2035299_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035317_2036757_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036785_2037133_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037151_2038102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2038088_2038250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2038754_2039705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039788_2041606_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041679_2042327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042339_2043269_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043438_2043903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044150_2044831_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044879_2046571_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046586_2047138_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047134_2047506_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047618_2048455_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048465_2048990_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049087_2049267_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2049396_2050428_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050501_2050858_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050847_2051723_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051821_2052706_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052727_2054023_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054971_2055622_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055709_2057230_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057487_2059353_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060398_2061349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2062321_2062681_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062668_2064105_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064101_2064755_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2064751_2065951_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066048_2067323_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067319_2068270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2079474	2120165	4104297	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2079474_2080425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080523_2081474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081433_2081847_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082131_2082431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2082840_2085009_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|2085588_2085783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2085808_2087839_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087858_2088071_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088348_2088888_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2089001_2090309_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090373_2091531_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091714_2092614_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092632_2093937_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093902_2095009_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095096_2095333_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095471_2096542_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096545_2097901_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2097927_2099088_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099090_2099729_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2099730_2101035_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2101075_2102371_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102377_2102884_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102880_2104029_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104056_2104482_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104804_2107687_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107779_2108535_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109300_2110650_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110748_2111699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111797_2112748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112821_2113295_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113320_2114529_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114525_2115299_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115298_2115922_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116087_2116348_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116651_2117233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117299_2117554_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117540_2120165_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2147948	2213497	4104297	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2147948_2148899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2148885_2149044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2149099_2149909_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2150033_2150984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150980_2151874_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151998_2152193_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152192_2152534_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152543_2154406_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154535_2155048_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155050_2155374_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155375_2155786_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155823_2157035_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157052_2157565_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157780_2158272_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158524_2160561_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160638_2161841_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2161891_2162620_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_010929591.1|2164177_2165128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165698_2165911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165928_2166660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166694_2167336_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2167328_2168045_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170209_2170986_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2171007_2172165_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172161_2172593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2172589_2173393_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2173406_2173862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173874_2174846_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174911_2176135_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176362_2177313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177436_2179890_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180078_2181383_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181487_2182141_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182143_2183454_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2183632_2184211_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184322_2184523_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184868_2185435_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185518_2185722_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186028_2186349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186390_2186672_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186746_2188003_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188385_2188715_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190285_2191107_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191106_2192246_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192252_2193149_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2193145_2195071_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195430_2198043_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198095_2200396_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200392_2201601_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2201862_2202237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202233_2203184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203282_2205277_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205336_2206302_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206291_2209153_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209155_2209662_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209766_2210975_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210976_2211915_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212076_2212550_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212546_2213497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2506095	2564339	4104297	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2506095_2507046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507525_2508182_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508196_2509864_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509866_2510496_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510707_2511802_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511946_2512759_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512762_2514466_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2514516_2515647_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515833_2516910_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516991_2517642_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|2517656_2519090_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519343_2520162_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520158_2520863_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521762_2522878_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522911_2523286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523308_2524466_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524478_2524712_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525346_2528316_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528330_2528540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528691_2529321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|2529317_2531435_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|2531431_2532112_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532108_2532669_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532675_2533773_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|2533910_2534519_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534515_2535808_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535821_2536364_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536373_2537210_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537243_2538305_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538346_2539399_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539414_2539717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539858_2540809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996304.1|2540795_2540954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2540987_2542682_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542678_2543764_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543811_2544711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544721_2545366_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546387_2549630_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|2549640_2550738_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|2551000_2551984_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_076879624.1|2552082_2553033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553131_2554082_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554091_2554781_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554840_2555278_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555323_2556217_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556264_2557437_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557433_2558588_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2558784_2559135_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559124_2559559_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559575_2560526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560673_2561141_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561121_2562279_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562344_2563271_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563388_2564339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2606619	2673119	4104297	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606619_2607570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607939_2608512_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608514_2609525_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609517_2610018_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610028_2610370_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2610381_2611173_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611189_2611459_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611481_2612270_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612316_2613333_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613549_2614992_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615170_2616790_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616910_2618731_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618809_2620342_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620375_2622022_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622091_2623114_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_077085736.1|2623131_2624265_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624267_2624957_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624956_2625742_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625785_2626550_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626588_2628010_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628075_2628780_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628827_2629247_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629259_2629667_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629850_2630561_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630687_2630978_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630995_2631478_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635983_2637138_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637443_2638460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638706_2639495_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639561_2640242_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640238_2641009_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641107_2642058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642113_2643031_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643041_2644220_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644239_2645235_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646823_2647432_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647419_2648460_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648477_2649440_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649436_2650630_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650626_2651424_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651449_2652436_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652454_2654494_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654695_2655376_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655389_2656301_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656297_2656876_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657014_2657920_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657927_2661347_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661334_2663935_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664890_2665523_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665916_2666675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666671_2667874_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668061_2669012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669919_2671065_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2671084_2671807_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671923_2672103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672168_2673119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2835684	2901268	4104297	transposase,tRNA	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|2835684_2836635_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2836733_2837684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2837886_2838876_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2838959_2839313_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839390_2839999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2841672_2842251_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842275_2843229_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843268_2844186_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844307_2845234_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845241_2845988_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846314_2847256_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003811651.1|2847331_2847454_-	membrane protein	NA	NA	NA	NA	NA
WP_010930224.1|2847482_2849180_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2849614_2851036_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851189_2851969_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930221.1|2852093_2852966_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853077_2854202_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2854247_2855210_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2855202_2856057_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856164_2856575_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2856571_2857522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857620_2858502_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858579_2859959_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2859997_2860843_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|2860858_2861203_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861205_2861742_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861914_2862490_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862592_2863330_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863397_2865035_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865142_2865898_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865885_2866848_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2866949_2867750_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867811_2869887_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870051_2872427_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872507_2873863_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875341_2876064_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876118_2877102_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877231_2878182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878178_2879081_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879168_2879927_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|2879939_2881088_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881128_2882556_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882785_2884000_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884045_2886916_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889326_2889815_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889940_2892637_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892791_2895074_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895238_2895871_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895969_2896920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896966_2897521_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897588_2898434_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898503_2899472_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899471_2901268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2918838	2978732	4104297	transposase,tRNA,holin	Catovirus(22.22%)	50	NA	NA
WP_010930190.1|2918838_2920359_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920401_2920704_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920700_2921333_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921411_2923277_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|2923273_2924089_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|2924096_2925212_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926116_2926995_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926994_2927819_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927986_2928937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|2929119_2931999_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|2931980_2932757_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932849_2934313_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934309_2934681_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934698_2936012_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936048_2936507_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936619_2937570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937566_2938580_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938719_2939706_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|2939749_2940550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2941352_2942303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995509.1|2942289_2942451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|2942454_2943057_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943075_2943708_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|2943945_2945832_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945850_2946693_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946689_2948048_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948268_2949063_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949293_2950787_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951022_2953104_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953298_2954339_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954473_2955490_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955511_2956369_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956413_2957190_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2957557_2958508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958534_2958999_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960205_2962494_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962610_2963483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963525_2964680_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964714_2965545_-	transglycosylase	NA	NA	NA	NA	NA
WP_023853525.1|2965628_2967173_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967215_2967575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967576_2967990_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968030_2968348_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968432_2969149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969412_2970834_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970900_2973648_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2973980_2974997_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975332_2975974_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976064_2977501_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977658_2978732_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 24
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	2983618	3118777	4104297	transposase,tRNA	uncultured_Caudovirales_phage(10.0%)	119	NA	NA
WP_010931363.1|2983618_2984635_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985572_2987000_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986996_2988019_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988008_2988482_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_023995116.1|2988607_2989510_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989506_2991150_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991146_2992154_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|2992984_2994001_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994100_2994733_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994741_2995131_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995183_2996236_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997099_2998806_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998879_2999380_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999394_3001452_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001478_3001772_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001873_3002821_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002833_3003709_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003829_3004390_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004424_3004748_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005183_3005921_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010929591.1|3006219_3007170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007413_3007677_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007750_3008032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008048_3008909_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008905_3009241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009294_3009945_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011625_3012570_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012615_3012933_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012935_3013874_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014051_3014537_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014555_3015104_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015135_3015288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|3015380_3016514_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443834.1|3016551_3017259_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017413_3019762_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019758_3020697_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020722_3021913_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021909_3022683_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022712_3023906_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024023_3025034_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025051_3027088_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027282_3028023_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3028121_3029072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029114_3030290_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030511_3032302_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032314_3033976_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033988_3036694_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036986_3038741_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038737_3039364_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039360_3040212_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040287_3042402_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_023853098.1|3042552_3043203_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043348_3043600_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043669_3045052_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045048_3048228_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049035_3049953_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050004_3050736_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050795_3051368_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052876_3053893_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054030_3055080_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055184_3056135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056230_3056956_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057166_3057547_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057852_3058725_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058732_3059113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059266_3060541_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062028_3062937_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063734_3064799_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3066635_3067670_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067859_3068501_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068583_3070410_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070653_3071583_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071582_3072332_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072403_3073318_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073337_3074483_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074543_3075455_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075535_3076486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076584_3077169_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077203_3078193_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078189_3079131_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079127_3080348_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080390_3080705_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080896_3081256_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_003821510.1|3081257_3082988_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083160_3083832_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083846_3085175_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085171_3086071_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086157_3087243_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3087235_3088369_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3088368_3091050_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091420_3092002_+	OmpA family protein	NA	NA	NA	NA	NA
WP_077274086.1|3092079_3092853_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930092.1|3092849_3093527_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093742_3094924_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095696_3095879_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095908_3096859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740670.1|3096845_3097100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566317.1|3096988_3097381_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097657_3098569_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098693_3099668_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099664_3100615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100713_3101799_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101896_3102307_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102922_3104836_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104971_3107584_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107585_3108320_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108483_3109665_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109661_3109874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109870_3110851_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110896_3111724_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930067.1|3111870_3113688_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113742_3114126_+	ferredoxin	NA	NA	NA	NA	NA
WP_010930066.1|3114122_3115073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115185_3115437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115630_3115846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115942_3117061_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117180_3117393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117552_3117774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117826_3118777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	3232098	3301101	4104297	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3232098_3233049_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233045_3234065_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234074_3236783_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236930_3237587_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_154219863.1|3237546_3237699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3237685_3238636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|3238741_3239677_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239876_3241571_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241605_3242532_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242600_3243698_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243716_3244580_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244591_3245374_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245370_3246489_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246485_3248018_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248058_3249066_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249210_3249933_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249948_3250971_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251287_3252022_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252106_3253852_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253848_3254601_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254645_3255602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255690_3256257_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256264_3257125_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|3257154_3257898_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|3257914_3258598_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259435_3260350_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260414_3261323_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261413_3262838_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262839_3264162_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264158_3266297_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266374_3271495_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271595_3271904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271973_3272531_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272546_3274028_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274082_3275936_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276198_3277536_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277570_3279568_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279585_3281634_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281764_3282631_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282899_3283865_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283979_3285128_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285552_3285864_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285897_3286158_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286307_3287441_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287511_3288648_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288813_3289608_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289670_3290114_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290229_3291180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|3291166_3291355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|3291302_3291710_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291782_3293978_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294199_3295150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295109_3295634_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295765_3296737_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296856_3299301_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299316_3299907_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300150_3301101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	3316547	3416660	4104297	protease,tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
WP_005012067.1|3316547_3317498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318229_3318607_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318591_3319293_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319436_3320129_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320128_3321232_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321341_3323714_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323710_3325270_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325294_3326092_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326123_3327269_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327373_3328816_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|3328818_3329907_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332185_3333136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|3333122_3333341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3334265_3334823_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334798_3335149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335317_3336112_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336108_3337158_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337157_3337847_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337933_3338431_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338462_3339779_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339795_3340770_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340806_3341265_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341264_3341945_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341947_3342376_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342428_3344159_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344224_3344797_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344777_3345464_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345819_3346491_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010926433.1|3347040_3347322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|3347318_3347852_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347833_3348385_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348363_3348606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348610_3349423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349422_3349686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349726_3349924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349904_3350321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350325_3354282_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354274_3354664_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354660_3355194_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355261_3355621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355630_3358243_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358268_3358559_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358576_3358906_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358915_3359434_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359688_3360189_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360196_3360619_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360615_3361014_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361010_3361406_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3361405_3361606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361607_3362090_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362152_3362404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|3362413_3363061_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|3363078_3364029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364457_3365060_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365182_3365425_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365430_3366486_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366514_3367933_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367935_3369213_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|3369199_3369649_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|3370324_3371275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3371292_3371514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3371528_3372227_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|3372219_3372540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3373019_3373631_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|3373696_3373909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374160_3375111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375209_3376283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376450_3377245_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377284_3377809_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377801_3379544_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379753_3380512_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380514_3381222_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381238_3382120_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382130_3382889_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382857_3383613_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383682_3385101_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385122_3385773_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385906_3386242_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_023995786.1|3386182_3386344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|3386330_3387281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387357_3389178_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389182_3390256_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390378_3391347_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391420_3392332_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392350_3392923_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393003_3393552_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393551_3395141_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395210_3395450_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|3395490_3396522_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396581_3397763_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397859_3398312_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398321_3399662_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399978_3401016_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401397_3401757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401840_3402782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402856_3403807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404100_3405195_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3405276_3406158_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406179_3407019_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407094_3408612_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408708_3409809_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409825_3410248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814195.1|3410270_3410483_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410529_3411450_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814191.1|3411713_3412382_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412384_3412714_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3412920_3414354_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3414365_3414749_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414810_3415611_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_154219861.1|3415558_3415723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3415709_3416660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016961	Bordetella pertussis strain C934, complete genome	4104297	4003365	4068277	4104297	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4003365_4003851_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003939_4004077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004069_4005050_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005316_4006126_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006165_4006846_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006839_4007298_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007309_4007672_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007754_4008438_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008493_4008802_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008820_4009135_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009131_4011606_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011613_4013005_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4013001_4013187_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013165_4013867_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013863_4014685_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014665_4015790_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015782_4016802_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4017007_4018042_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018142_4018934_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4019016_4019391_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019368_4020778_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020770_4022153_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022487_4024092_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4024127_4025141_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025151_4026078_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026468_4027419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027588_4028815_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029014_4029881_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029873_4030836_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030936_4031887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031985_4032936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033034_4033985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033981_4035475_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035471_4038579_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038575_4041644_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041640_4042891_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043071_4043833_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043865_4044516_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044518_4045358_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045598_4046342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046424_4046772_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046869_4047712_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047756_4048644_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048670_4048859_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048956_4050414_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050400_4051927_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051945_4052413_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052412_4053435_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053555_4054296_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054350_4055451_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055452_4056643_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056762_4057779_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058097_4058769_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058765_4059674_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059885_4060533_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064384_4065461_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065471_4066281_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066370_4067144_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4067163_4067340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4067326_4068277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
