The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	0	70036	4107441	tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	77634	136108	4107441	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	164893	225404	4107441	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169127_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174135_174315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	233336	286924	4107441	tRNA,transposase,protease	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236257_236431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	555309	614609	4107441	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_014905441.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852728.1|587291_588887_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|599914_600130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	620764	674505	4107441	transposase	Salmonella_phage(33.33%)	50	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|621783_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|637394_637808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|643077_643830_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_095597224.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_153302791.1|653529_653706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_029443830.1|660567_661959_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_015040527.1|668503_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	723392	755201	4107441	tRNA,integrase,transposase,protease	Pseudomonas_phage(33.33%)	22	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_029443720.1|723392_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853401.1|738155_739586_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1005153	1099190	4107441	transposase	Bacillus_virus(27.27%)	88	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|1017121_1018294_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052712_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|1055462_1056608_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|1059889_1060096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065731_1066472_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|1086088_1086307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087300_1088449_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091466_1092555_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|1098007_1098253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098239_1099190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1129576	1200546	4107441	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152261_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|1159635_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182391_1182730_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183437_1183704_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185410_1186361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186357_1187689_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|1188928_1190950_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190942_1191584_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191580_1191988_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191984_1192785_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192859_1193564_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193595_1194390_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1194386_1195337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195435_1196386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196484_1196919_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_095597225.1|1197001_1199338_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	1.1e-124
WP_010930525.1|1199529_1200546_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1300766	1357977	4107441	transposase	Klosneuvirus(16.67%)	52	NA	NA
WP_010931070.1|1300766_1301717_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305463_1306075_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306297_1307758_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307854_1309447_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|1309433_1309712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|1309770_1310058_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310059_1311400_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311495_1312185_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312197_1313628_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315352_1316174_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316184_1317756_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317784_1318762_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318788_1319592_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319588_1320383_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320390_1321626_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321618_1322053_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322802_1323753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324374_1326102_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326213_1327572_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1327692_1327878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1327864_1328815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328855_1329926_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329948_1330827_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1330998_1331970_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332132_1332975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333136_1333817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1333810_1334980_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1334976_1336008_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1336051_1337293_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337327_1338860_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338940_1339564_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339594_1340206_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340241_1340712_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341143_1342148_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342184_1343699_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343702_1344662_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344690_1345494_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345495_1347130_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347213_1348275_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348473_1348743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348746_1349271_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1349686_1350637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|1350633_1351704_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351776_1352415_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352709_1352937_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353059_1353773_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1354017_1354968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|1354954_1355119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|1355071_1355353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355467_1356916_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_153302788.1|1356899_1357040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1357026_1357977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1448210	1500363	4107441	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1448210_1449161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1449147_1449315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449327_1449681_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449693_1450056_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450097_1450523_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450725_1451982_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452180_1453161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453310_1454552_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454650_1455601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455609_1456305_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459126_1459726_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459736_1461902_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461925_1463710_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463709_1463799_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464493_1464766_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464765_1466832_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466828_1467779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467877_1468828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468943_1469276_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469272_1469959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469945_1470905_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470946_1473307_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473306_1473939_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1474001_1475381_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475427_1476783_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1477061_1477310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477497_1477815_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478087_1478603_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478696_1478858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478873_1479629_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479967_1480174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480181_1480841_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481135_1483340_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483450_1484674_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484796_1485771_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485838_1487032_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487046_1487847_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487843_1489700_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489696_1490302_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490320_1491706_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492431_1493658_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493746_1494529_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494627_1495578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495604_1496378_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496389_1497631_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499412_1500363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1547094	1613422	4107441	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1547094_1548045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548051_1549164_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549850_1551053_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551256_1553917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553929_1557334_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558001_1560227_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560273_1560600_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560650_1561259_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561357_1562308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562377_1563142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563138_1563738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1563841_1564687_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564752_1565379_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565375_1566326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1566312_1566501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1566424_1567546_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567526_1568528_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568633_1570145_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570141_1571446_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571557_1572118_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572385_1572940_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573395_1573611_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573865_1576463_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576459_1577647_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578304_1578919_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579007_1580135_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580146_1581052_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1581802_1581958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1581944_1582895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583076_1583829_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583897_1584557_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584553_1585282_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585294_1587574_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587598_1587802_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1587843_1588491_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1588611_1589529_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589525_1590239_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590476_1591247_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591251_1591851_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592095_1593586_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593644_1593929_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1593925_1594054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1594066_1594222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594494_1595421_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595557_1596298_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596464_1597841_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598022_1598928_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600579_1602382_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602499_1603150_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603248_1604199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604220_1605441_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605626_1607039_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607102_1608170_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1608166_1609657_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609666_1610611_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610770_1611469_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611546_1612452_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612471_1613422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1649371	1704962	4107441	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1649371_1650322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650380_1651154_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651146_1652703_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652699_1653650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1653636_1653792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1654976_1655579_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655818_1656520_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656513_1657296_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657480_1658431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1658417_1658579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1658529_1659267_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659456_1660215_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660261_1661251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661428_1662397_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663936_1664905_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664913_1665855_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666328_1667339_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667329_1668844_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668840_1670187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670189_1671224_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671273_1672899_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673451_1674402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674506_1675454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675507_1677322_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677314_1677989_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678118_1681193_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681206_1681506_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681820_1682444_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682687_1683557_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683534_1684479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1684564_1685536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1685603_1686377_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686373_1687570_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687600_1688551_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688772_1689462_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689526_1690282_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690333_1691326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691335_1692289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692404_1693367_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694768_1695197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695193_1696144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696437_1697160_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697598_1698786_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698789_1699170_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700889_1701861_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701874_1702588_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702592_1703510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703616_1703913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704011_1704962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	1937726	2007378	4107441	tRNA,transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1937726_1940384_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940461_1941664_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941660_1942173_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1942295_1942634_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943009_1943960_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944058_1945009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1945172_1947068_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1947181_1947349_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947412_1947649_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948017_1949217_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950732_1951683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952134_1953136_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953308_1954166_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954162_1955425_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955525_1955900_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|1955948_1957160_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957244_1958015_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958128_1958893_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|1959008_1960145_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960141_1960948_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962692_1963664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963820_1964333_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964491_1965466_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966466_1967261_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967286_1968093_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|1968203_1968794_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968804_1969983_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970085_1970460_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970712_1972044_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972110_1975341_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976831_1977578_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977662_1978124_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978161_1979220_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979182_1981012_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981051_1981624_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|1983048_1983960_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|1984188_1985511_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985870_1986506_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986465_1987416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988286_1989159_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989236_1990376_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|1990725_1991991_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991996_1992524_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992528_1993347_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993346_1994069_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994090_1994405_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|1994401_1995571_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995601_1996477_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996473_1997793_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997865_1999062_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999072_2000560_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003154_2004054_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004191_2005157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005255_2006206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2006249_2006441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2006427_2007378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2018874	2068270	4107441	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018874_2019825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020962_2021259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021433_2022786_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022928_2023945_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025924_2026938_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2027024_2027930_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028086_2028431_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028588_2029047_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029060_2031277_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031273_2032335_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032363_2033338_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033289_2034108_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034120_2034729_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2034903_2035299_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035317_2036757_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036785_2037133_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037151_2038102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2038088_2038250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2038754_2039705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039788_2041606_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041679_2042327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042339_2043269_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043438_2043903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044150_2044831_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044879_2046571_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046586_2047138_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047134_2047506_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047618_2048455_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048465_2048990_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049087_2049267_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2049396_2050428_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050501_2050858_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050847_2051723_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051821_2052706_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052727_2054023_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054971_2055622_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055709_2057230_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057487_2059353_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060398_2061349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2062321_2062681_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062668_2064105_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064101_2064755_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2064751_2065951_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066048_2067323_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067319_2068270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2079474	2120165	4107441	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2079474_2080425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080523_2081474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081433_2081847_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082131_2082431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2082840_2085009_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|2085588_2085783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2085808_2087839_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087858_2088071_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088348_2088888_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2089001_2090309_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090373_2091531_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091714_2092614_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092632_2093937_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093902_2095009_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095096_2095333_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095471_2096542_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096545_2097901_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2097927_2099088_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099090_2099729_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2099730_2101035_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2101075_2102371_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102377_2102884_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102880_2104029_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104056_2104482_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104804_2107687_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107779_2108535_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109300_2110650_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110748_2111699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111797_2112748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112821_2113295_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113320_2114529_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114525_2115299_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115298_2115922_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116087_2116348_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116651_2117233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117299_2117554_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117540_2120165_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2147948	2213497	4107441	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2147948_2148899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2148885_2149044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2149099_2149909_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2150033_2150984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150980_2151874_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151998_2152193_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152192_2152534_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152543_2154406_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154535_2155048_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155050_2155374_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155375_2155786_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155823_2157035_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157052_2157565_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157780_2158272_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158524_2160561_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160638_2161841_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2161891_2162620_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|2164177_2165128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165698_2165911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165928_2166660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166694_2167336_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2167328_2168045_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170209_2170986_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2171007_2172165_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172161_2172593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2172589_2173393_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2173406_2173862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173874_2174846_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174911_2176135_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176362_2177313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177436_2179890_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180078_2181383_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181487_2182141_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182143_2183454_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2183632_2184211_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184322_2184523_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184868_2185435_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185518_2185722_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186028_2186349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186390_2186672_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186746_2188003_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188385_2188715_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190285_2191107_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191106_2192246_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192252_2193149_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2193145_2195071_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195430_2198043_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198095_2200396_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200392_2201601_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2201862_2202237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2202233_2203184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203282_2205277_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205336_2206302_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206291_2209153_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209155_2209662_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209766_2210975_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210976_2211915_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212076_2212550_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212546_2213497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2507138	2565382	4107441	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2507138_2508089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508568_2509225_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509239_2510907_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510909_2511539_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511750_2512845_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512989_2513802_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2513805_2515509_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2515559_2516690_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516876_2517953_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518034_2518685_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|2518699_2520133_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520386_2521205_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2521201_2521906_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522805_2523921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523954_2524329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524351_2525509_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525521_2525755_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526389_2529359_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529373_2529583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529734_2530364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|2530360_2532478_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|2532474_2533155_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533151_2533712_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533718_2534816_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|2534953_2535562_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535558_2536851_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536864_2537407_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537416_2538253_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538286_2539348_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539389_2540442_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540457_2540760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540901_2541852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996304.1|2541838_2541997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2542030_2543725_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543721_2544807_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544854_2545754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545764_2546409_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547430_2550673_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|2550683_2551781_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|2552043_2553027_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_076879624.1|2553125_2554076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554174_2555125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555134_2555824_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555883_2556321_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556366_2557260_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2557307_2558480_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2558476_2559631_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2559827_2560178_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2560167_2560602_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560618_2561569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561716_2562184_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2562164_2563322_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2563387_2564314_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2564431_2565382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2607662	2674162	4107441	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607662_2608613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608982_2609555_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609557_2610568_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610560_2611061_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611071_2611413_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2611424_2612216_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612232_2612502_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612524_2613313_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613359_2614376_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614592_2616035_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616213_2617833_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617953_2619774_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619852_2621385_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621418_2623065_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623134_2624157_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624174_2625308_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625310_2626000_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625999_2626785_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626828_2627593_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627631_2629053_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629118_2629823_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629870_2630290_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630302_2630710_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630893_2631604_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631730_2632021_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632038_2632521_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637026_2638181_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638486_2639503_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639749_2640538_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640604_2641285_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641281_2642052_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642150_2643101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643156_2644074_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644084_2645263_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645282_2646278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647866_2648475_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648462_2649503_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649520_2650483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650479_2651673_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651669_2652467_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652492_2653479_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653497_2655537_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655738_2656419_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656432_2657344_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657340_2657919_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658057_2658963_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658970_2662390_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662377_2664978_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665933_2666566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666959_2667718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667714_2668917_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669104_2670055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670962_2672108_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2672127_2672850_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672966_2673146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673211_2674162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2836727	2902313	4107441	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|2836727_2837678_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2837776_2838727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2838929_2839919_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2840002_2840356_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2840433_2841042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2842715_2843294_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2843318_2844272_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2844311_2845229_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2845350_2846277_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2846284_2847031_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2847357_2848299_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003811651.1|2848374_2848497_-	membrane protein	NA	NA	NA	NA	NA
WP_010930224.1|2848525_2850223_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2850657_2852079_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2852232_2853012_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930221.1|2853136_2854009_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2854120_2855245_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2855290_2856253_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2856245_2857100_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2857207_2857618_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2857614_2858565_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2858663_2859545_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2859622_2861002_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2861040_2861886_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|2861901_2862246_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2862248_2862785_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2862957_2863533_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2863635_2864373_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2864440_2866078_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2866185_2866941_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2866928_2867891_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2867992_2868793_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2868854_2870930_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2871094_2873470_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2873550_2874906_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876384_2877107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877161_2878145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878274_2879225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879221_2880124_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880211_2880970_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|2880982_2882131_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882171_2883599_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883828_2885043_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2885088_2887959_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890369_2890858_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890983_2893680_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893834_2896117_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2896283_2896916_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2897014_2897965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2898011_2898566_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898633_2899479_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899548_2900517_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2900516_2902313_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2919883	2977091	4107441	tRNA,transposase,holin	Catovirus(22.22%)	48	NA	NA
WP_010930190.1|2919883_2921404_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921446_2921749_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921745_2922378_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922456_2924322_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|2924318_2925134_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|2925141_2926257_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927161_2928040_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2928039_2928864_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2929031_2929982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|2930164_2933044_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|2933025_2933802_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933894_2935358_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935354_2935726_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935743_2937057_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937093_2937552_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2937664_2938615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938611_2939625_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939764_2940751_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|2940794_2941595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2942397_2943348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|2943446_2944397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995509.1|2944383_2944545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|2944548_2945151_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945169_2945802_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|2946039_2947926_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2947944_2948787_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2948783_2950142_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2950362_2951157_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2951387_2952881_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2953116_2955198_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2955392_2956433_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2956567_2957584_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2957605_2958463_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2958507_2959284_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2959651_2960602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960628_2961093_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962299_2964588_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964704_2965577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965619_2966774_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966808_2967639_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967722_2969267_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969309_2969669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969670_2970084_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970124_2970442_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970526_2971243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971506_2972928_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972994_2975742_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2976074_2977091_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	2983075	3118217	4107441	tRNA,transposase	uncultured_Mediterranean_phage(13.64%)	115	NA	NA
WP_015041211.1|2983075_2984503_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|2985440_2986457_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|2986789_2987725_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|2987774_2989655_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|2989721_2990066_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|2990210_2991347_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|2991343_2992417_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|2992574_2994011_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|2994101_2994743_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|2995078_2996095_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996194_2996827_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996835_2997225_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997277_2998330_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999193_3000900_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000973_3001474_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001488_3003546_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003572_3003866_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003967_3004915_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004927_3005803_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005923_3006484_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006518_3006842_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007277_3008015_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008313_3009264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3009507_3009771_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3009844_3010126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3010142_3011003_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3010999_3011335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3011388_3012039_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3013719_3014664_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3014709_3015027_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3015029_3015968_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3016145_3016631_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3016649_3017198_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3017229_3017382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|3017474_3018608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443834.1|3018645_3019353_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3019507_3021856_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3021852_3022791_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3022816_3024007_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3024003_3024777_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3024806_3026000_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3026117_3027128_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3027145_3029182_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3029376_3030117_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3030215_3031166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031208_3032384_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032605_3034396_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_095597226.1|3034408_3036070_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036082_3038788_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039080_3040835_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040831_3041458_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041454_3042306_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042381_3044496_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_023853098.1|3044646_3045297_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045442_3045694_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045763_3047146_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047142_3050322_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930119.1|3052099_3052831_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052890_3053463_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054971_3055988_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056125_3057175_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057279_3058230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3058328_3059279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3059374_3060100_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3060310_3060691_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3060996_3061869_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3061876_3062257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3062410_3063685_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3065172_3066081_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3066878_3067943_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3069779_3070814_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3071003_3071645_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3071727_3073554_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3073797_3074727_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3074726_3075476_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3075547_3076462_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3076481_3077627_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3077687_3078599_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3078679_3079630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3079728_3080313_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3080347_3081337_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3081333_3082275_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3082271_3083492_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3083534_3083849_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3084040_3084400_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_003821510.1|3084401_3086132_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3086304_3086976_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3086990_3088319_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3088315_3089215_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3089301_3090387_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3090379_3091513_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3091512_3094194_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3094564_3095146_+	OmpA family protein	NA	NA	NA	NA	NA
WP_077274086.1|3095223_3095997_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930092.1|3095993_3096671_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3096886_3098068_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3098840_3099023_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3099052_3100003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740670.1|3099989_3100244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566317.1|3100132_3100525_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3100801_3101713_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3101837_3102812_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3102808_3103759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3103857_3104943_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3105040_3105451_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3106066_3107980_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3108115_3110728_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3110729_3111464_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3111627_3112809_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3112805_3113018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3113014_3113995_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3114040_3114868_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930067.1|3115014_3116832_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3116886_3117270_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3117266_3118217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	3235242	3304245	4107441	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3235242_3236193_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236189_3237209_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237218_3239927_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240074_3240731_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_154219863.1|3240690_3240843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3240829_3241780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|3241885_3242821_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3243020_3244715_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3244749_3245676_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3245744_3246842_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3246860_3247724_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3247735_3248518_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3248514_3249633_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3249629_3251162_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3251202_3252210_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3252354_3253077_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3253092_3254115_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3254431_3255166_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3255250_3256996_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3256992_3257745_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3257789_3258746_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3258834_3259401_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3259408_3260269_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|3260298_3261042_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|3261058_3261742_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3262579_3263494_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3263558_3264467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3264557_3265982_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3265983_3267306_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3267302_3269441_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3269518_3274639_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3274739_3275048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3275117_3275675_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3275690_3277172_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3277226_3279080_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3279342_3280680_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3280714_3282712_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3282729_3284778_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3284908_3285775_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3286043_3287009_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3287123_3288272_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3288696_3289008_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3289041_3289302_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3289451_3290585_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3290655_3291792_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3291957_3292752_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3292814_3293258_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3293373_3294324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|3294310_3294499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|3294446_3294854_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3294926_3297122_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3297343_3298294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3298253_3298778_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3298909_3299881_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3300000_3302445_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3302460_3303051_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3303294_3304245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	3319691	3419804	4107441	terminase,tail,tRNA,transposase,protease	uncultured_Caudovirales_phage(13.79%)	110	NA	NA
WP_005012067.1|3319691_3320642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3321373_3321751_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321735_3322437_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3322580_3323273_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3323272_3324376_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3324485_3326858_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326854_3328414_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3328438_3329236_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3329267_3330413_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3330517_3331960_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|3331962_3333051_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3335329_3336280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|3336266_3336485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3337409_3337967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3337942_3338293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3338461_3339256_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3339252_3340302_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3340301_3340991_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3341077_3341575_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3341606_3342923_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3342939_3343914_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3343950_3344409_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3344408_3345089_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3345091_3345520_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3345572_3347303_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3347368_3347941_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3347921_3348608_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3348963_3349635_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010926433.1|3350184_3350466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|3350462_3350996_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3350977_3351529_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3351507_3351750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3351754_3352567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3352566_3352830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3352870_3353068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3353048_3353465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3353469_3357426_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3357418_3357808_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357804_3358338_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3358405_3358765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358774_3361387_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3361412_3361703_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361720_3362050_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3362059_3362578_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362832_3363333_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3363340_3363763_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363759_3364158_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3364154_3364550_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3364549_3364750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364751_3365234_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3365296_3365548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|3365557_3366205_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|3366222_3367173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3367601_3368204_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3368326_3368569_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3368574_3369630_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369658_3371077_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3371079_3372357_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|3372343_3372793_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|3373468_3374419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3374436_3374658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3374672_3375371_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|3375363_3375684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3376163_3376775_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|3376840_3377053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3377304_3378255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3378353_3379427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3379594_3380389_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3380428_3380953_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380945_3382688_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382897_3383656_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383658_3384366_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3384382_3385264_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3385274_3386033_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3386001_3386757_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386826_3388245_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3388266_3388917_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3389050_3389386_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3389474_3390425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390501_3392322_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392326_3393400_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393522_3394491_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394564_3395476_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395494_3396067_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396147_3396696_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396695_3398285_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398354_3398594_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|3398634_3399666_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399725_3400907_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3401003_3401456_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401465_3402806_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3403122_3404160_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404541_3404901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404984_3405926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3406000_3406951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407244_3408339_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3408420_3409302_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409323_3410163_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410238_3411756_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411852_3412953_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412969_3413392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814195.1|3413414_3413627_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413673_3414594_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814191.1|3414857_3415526_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415528_3415858_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3416064_3417498_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3417509_3417893_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417954_3418755_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_154219861.1|3418702_3418867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3418853_3419804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016959	Bordetella pertussis strain D422, complete genome	4107441	4006509	4071421	4107441	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006509_4006995_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007083_4007221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007213_4008194_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008460_4009270_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009309_4009990_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009983_4010442_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010453_4010816_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010898_4011582_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011637_4011946_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011964_4012279_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012275_4014750_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014757_4016149_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016145_4016331_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016309_4017011_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017007_4017829_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017809_4018934_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018926_4019946_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4020151_4021186_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021286_4022078_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022160_4022535_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022512_4023922_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023914_4025297_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025631_4027236_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4027271_4028285_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028295_4029222_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029612_4030563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030732_4031959_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032158_4033025_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033017_4033980_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034080_4035031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035129_4036080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036178_4037129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037125_4038619_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038615_4041723_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041719_4044788_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044784_4046035_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046215_4046977_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047009_4047660_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047662_4048502_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048742_4049486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049568_4049916_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050013_4050856_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050900_4051788_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051814_4052003_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052100_4053558_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053544_4055071_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055089_4055557_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055556_4056579_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056699_4057440_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057494_4058595_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058596_4059787_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059906_4060923_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061241_4061913_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061909_4062818_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063029_4063677_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067528_4068605_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068615_4069425_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069514_4070288_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4070307_4070484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070470_4071421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
