The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	0	59497	4126037	tRNA,transposase	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	70134	123122	4126037	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	165942	226453	4126037	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	234385	287973	4126037	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	391906	449415	4126037	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	590420	651611	4126037	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_095586258.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	656935	704175	4126037	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692906_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	710341	764270	4126037	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|753398_754349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754592_755183_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755198_757643_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757762_758734_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758865_759390_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759349_760300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760521_762717_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762789_763197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763319_764270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	886859	954843	4126037	transposase	Bacillus_phage(33.33%)	55	NA	NA
WP_023994644.1|886859_887876_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888072_889056_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890654_892043_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892073_893063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893173_894406_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894687_895488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895510_897742_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898529_898976_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898997_899744_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899887_900865_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901498_902110_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902103_903321_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010931070.1|903461_904412_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904408_905128_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905248_907408_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907498_907768_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907856_908063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908061_908589_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908607_909387_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909554_910571_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910643_911135_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911145_912861_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914024_914975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914971_916804_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917202_917862_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918389_919070_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919351_920068_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920082_921384_-	phospholipase	NA	NA	NA	NA	NA
WP_010930057.1|926648_928001_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928029_928551_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928547_930002_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930036_930285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930390_931266_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931291_932347_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932359_933151_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933183_934554_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|935730_936681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936733_936955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937114_937327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937446_938565_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938661_938877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939070_939322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939434_940385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940381_940765_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940819_942634_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942783_943611_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943656_944637_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944633_944846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944842_946024_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946187_946922_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946923_949536_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949671_951585_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952200_952611_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952708_953794_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_077093446.1|953892_954843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	998372	1070889	4126037	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998372_999323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999427_1000477_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000614_1001631_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003139_1003712_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003771_1004503_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004554_1005472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006279_1009459_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009455_1010838_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010907_1011159_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011304_1011919_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012105_1014166_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014295_1015147_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015143_1015770_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015766_1017521_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017813_1020519_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020531_1022193_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022205_1023996_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024217_1025393_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025435_1026386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026484_1027225_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027419_1029456_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029473_1030484_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030601_1031795_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031824_1032598_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032594_1033785_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033810_1034749_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034745_1037094_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037248_1037890_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039219_1039372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039403_1039952_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039970_1040456_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040633_1041572_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041574_1041892_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041937_1042882_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044562_1045213_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045266_1045602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045598_1046459_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046475_1046757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046830_1047094_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047337_1048288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048586_1049324_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049759_1050083_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050117_1050678_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050798_1051674_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051686_1052634_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052735_1053029_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053055_1055113_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055127_1055628_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055701_1057408_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058271_1059324_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059376_1059766_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059774_1060407_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930153.1|1060506_1061523_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062353_1063361_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063357_1065001_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064997_1065885_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066025_1066499_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066488_1067511_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067507_1068935_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069872_1070889_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	1074642	1136703	4126037	tRNA,transposase,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1074642_1075779_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075775_1076849_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077006_1078443_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078533_1079175_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1079510_1080527_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1080859_1083592_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083658_1085080_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085343_1086060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086144_1086462_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086502_1086916_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086917_1087277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087319_1088864_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088947_1089778_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089812_1090967_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091009_1091882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091998_1094287_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095493_1095958_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095984_1096935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157734659.1|1096952_1097090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097302_1098079_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098123_1098981_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099002_1100019_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100153_1101194_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101388_1103470_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103705_1105199_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105429_1106224_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106444_1107803_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107799_1108642_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108660_1110547_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110488_1110740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110784_1111417_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111435_1112038_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1112189_1113140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113720_1114428_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114786_1115773_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115912_1116926_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116922_1117873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1117971_1118922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119034_1119493_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119529_1120843_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120860_1121232_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1121228_1122692_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122832_1123561_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123542_1126392_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126604_1127555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127722_1128547_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128546_1129425_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130329_1131445_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131473_1132268_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132264_1134130_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134208_1134841_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134837_1135140_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135182_1136703_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	1154273	1219862	4126037	tRNA,transposase	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1154273_1156070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156069_1157038_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157107_1157953_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158020_1158575_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158621_1159572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159670_1160303_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160472_1162755_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162909_1165606_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165731_1166220_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168630_1171501_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171546_1172761_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172990_1174418_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174515_1175607_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175619_1176378_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176465_1177368_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177364_1178315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178444_1179428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179482_1180205_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181683_1183039_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183119_1185495_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185659_1187735_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187796_1188591_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188698_1189661_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189648_1190404_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190511_1192149_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192216_1192954_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193056_1193632_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193804_1194341_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194373_1194688_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194703_1195549_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195587_1196967_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197044_1197926_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1198024_1198975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1199073_1200024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1200020_1200431_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1200538_1201393_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1201385_1202348_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1202393_1203518_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1203623_1204502_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1204626_1205406_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1205559_1206981_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1207415_1209113_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1209339_1210281_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1210607_1211354_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1211361_1212288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1212409_1213327_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1213366_1214320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1214344_1214923_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1216596_1217205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1217282_1217636_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1217719_1218709_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023853639.1|1218911_1219862_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	1318998	1387485	4126037	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1318998_1319949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320717_1321356_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322245_1322692_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322773_1323475_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323475_1324243_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324239_1325478_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325477_1326404_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326506_1327622_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327637_1328588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328941_1329523_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329519_1330353_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330563_1331877_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332053_1332935_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332954_1333806_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333858_1334947_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335057_1336185_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336419_1337031_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337129_1338080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338301_1338679_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338826_1339324_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339320_1339848_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339981_1340797_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340809_1341991_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342038_1342932_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343058_1343529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343654_1344482_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344510_1345287_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345283_1345559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345573_1346038_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346049_1346751_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346860_1347361_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347443_1348622_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350249_1350585_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350772_1352221_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352278_1352623_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352729_1353269_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353361_1354312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1354410_1354818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355050_1355482_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355663_1356068_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357304_1357628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357630_1358518_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358550_1358976_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359047_1359401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359640_1360147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360185_1361517_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361576_1362392_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362388_1363243_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366305_1368849_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370215_1371970_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371966_1374087_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374091_1376287_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376283_1379625_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382427_1383378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383443_1383623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383739_1384495_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384481_1385627_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386534_1387485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	1477098	1515688	4126037	transposase,protease	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1477098_1478433_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478485_1480822_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480947_1481511_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481519_1482611_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482682_1483138_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483138_1483933_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483929_1485111_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485097_1485703_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485699_1486473_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486484_1487312_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487473_1489837_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489904_1490624_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490747_1491173_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491207_1492158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492275_1493202_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493267_1494425_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494405_1494873_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495020_1495971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495987_1496422_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496411_1496762_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496958_1498113_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498109_1499282_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499329_1500223_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500268_1500706_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500765_1501455_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501464_1502415_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1502513_1503476_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1503702_1504857_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1504867_1508110_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509131_1509776_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509786_1510686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510733_1511819_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511815_1513510_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1513688_1514639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1514737_1515688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	1887585	1952787	4126037	tRNA,transposase	Tupanvirus(25.0%)	55	NA	NA
WP_010930630.1|1887585_1889046_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1889065_1889710_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1889746_1890712_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1890810_1891761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1891821_1892856_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1892955_1894221_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1894614_1895631_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|1895974_1896475_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|1896516_1896831_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|1896840_1897782_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|1897778_1898303_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|1898305_1899574_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|1899602_1900586_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|1900582_1901392_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|1901388_1902192_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|1902206_1902974_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|1903061_1903700_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|1903704_1904658_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|1904769_1905894_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|1907531_1908359_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|1908355_1909159_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|1909155_1910247_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|1910653_1911682_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|1911840_1912545_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|1912553_1914674_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930645.1|1914674_1915631_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|1915699_1916092_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|1916095_1916572_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|1916585_1916921_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|1916927_1917377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820151.1|1917584_1917884_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|1917936_1919049_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|1919053_1919692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|1919672_1920932_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|1920935_1923041_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|1923046_1925032_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|1925240_1925477_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|1925821_1926307_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|1926674_1927625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1927723_1928674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930653.1|1928720_1929929_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930654.1|1930020_1931970_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930655.1|1931966_1932743_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	1.3e-13
WP_010930656.1|1932739_1933510_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.2	3.3e-09
WP_019247494.1|1933664_1934144_-	cytochrome c	NA	NA	NA	NA	NA
WP_029443796.1|1935953_1936442_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930658.1|1936551_1937703_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010929891.1|1938003_1938756_+	maleate isomerase	NA	NA	NA	NA	NA
WP_010929892.1|1939622_1940654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929893.1|1940669_1941287_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010930525.1|1941478_1942495_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_061363663.1|1944567_1945974_+	ferric reductase	NA	NA	NA	NA	NA
WP_010930660.1|1945984_1948093_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930661.1|1948847_1949813_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853569.1|1951518_1952787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2040677	2110329	4126037	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2040677_2043335_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2043412_2044615_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2044611_2045124_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2045246_2045684_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2045960_2046911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2047074_2048970_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2049083_2049251_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2049314_2049551_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2049919_2051071_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2052634_2053585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2053683_2054634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2055085_2056087_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2056259_2057117_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2057113_2058376_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2058476_2058851_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2058923_2060111_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2060195_2060966_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2061079_2061844_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2061794_2063096_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2063092_2063899_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2065643_2066615_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2066771_2067284_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2067442_2068417_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2069417_2070212_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2070237_2071044_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2071154_2071745_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2071755_2072934_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2073036_2073411_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2073663_2074995_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2075061_2078292_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2079782_2080529_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2080613_2081075_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2081112_2082171_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2082133_2083963_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2084002_2084575_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2085999_2086821_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2087139_2088462_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2088821_2089457_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2089416_2090367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2091237_2092110_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2092187_2093327_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2093685_2094942_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2094947_2095475_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2095479_2096298_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2096297_2097020_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2097041_2097356_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2097373_2098522_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2098552_2099428_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2099424_2100744_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2100816_2102013_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2102023_2103511_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2106105_2107005_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2107142_2108108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2108206_2109157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2109378_2110329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2121825	2170172	4126037	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2121825_2122776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2123913_2124210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2124384_2125737_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2125879_2126896_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2128875_2129889_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2129975_2130881_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2131037_2131382_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2131539_2131998_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2132011_2134228_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2134224_2135286_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2135314_2136289_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2136240_2137059_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2137071_2137680_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2137854_2138250_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2138268_2139708_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2139736_2140084_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2140102_2141053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2141705_2142656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2142739_2144557_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2144630_2145278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2145290_2146220_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2146389_2146854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2147101_2147782_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2147830_2149522_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2149537_2150089_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2150085_2150457_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2150569_2151406_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2151416_2151941_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2152038_2152218_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2152347_2153322_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2153452_2153809_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2153798_2154674_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2154772_2155657_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2155678_2156974_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2157922_2158573_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2158660_2160181_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2160438_2162304_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|2162300_2163251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2163268_2163409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2164223_2164583_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2164570_2166007_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2166003_2166657_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2166653_2167847_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2167950_2169225_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2169221_2170172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2181376	2249752	4126037	tRNA,transposase,protease	Klosneuvirus(22.22%)	59	NA	NA
WP_010931070.1|2181376_2182327_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2182425_2183376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2183335_2183749_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2184033_2184333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2184742_2187025_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2187490_2187685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2187710_2189741_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2189760_2189973_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2190250_2190790_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2190903_2192199_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2192275_2193433_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2193616_2194516_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2194534_2195839_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2195804_2196911_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2196998_2197235_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2197373_2198444_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2198447_2199803_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2199829_2200987_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2200992_2201631_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2201632_2202928_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2202977_2204264_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2204279_2204786_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2204782_2205931_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2205958_2206384_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2206706_2209589_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2209681_2210437_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2211202_2212552_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930048.1|2212650_2213601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2213674_2214148_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2214173_2215382_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2215378_2216152_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2216151_2216775_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2216940_2217201_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2217504_2218086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2218152_2218407_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2218393_2221018_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2221089_2221908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2221904_2222510_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2222547_2223681_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2225396_2225771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2225868_2227143_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2227146_2228724_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2229630_2230986_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2230982_2232617_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2232609_2233440_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2233457_2234402_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2234454_2236029_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2236076_2236436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2236428_2236749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2236864_2237797_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2237899_2238856_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2239005_2240343_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2240347_2241604_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2241799_2242846_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2242903_2243272_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2243402_2244275_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2244351_2245254_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2246310_2247528_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2248801_2249752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2303086	2366052	4126037	tRNA,transposase	Synechococcus_phage(12.5%)	55	NA	NA
WP_010930179.1|2303086_2304037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2304135_2306130_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2306189_2307155_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2307144_2310006_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2310008_2310515_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2310619_2311828_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2311829_2312768_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2312929_2313403_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2313399_2314350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2314460_2314901_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2315029_2316259_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2316297_2317119_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2317172_2318324_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2318415_2318904_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2321454_2324004_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2324074_2326648_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2326913_2327114_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2327145_2327307_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2327364_2327703_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2327851_2328802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2329576_2330245_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2330226_2332182_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2332424_2333174_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2333186_2334050_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2334053_2335469_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2335602_2336331_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2336469_2336670_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2336845_2337244_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2337267_2338668_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2338786_2339539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2339827_2340505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2340531_2341311_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2341307_2342192_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2342209_2342989_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2342973_2343732_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2343869_2344505_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2344772_2345789_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2345886_2346927_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2347061_2348354_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2349713_2350097_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2350114_2350702_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2350739_2351690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2352674_2353448_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2353444_2354443_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2354527_2355304_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2355459_2357064_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2357444_2358569_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2358695_2359319_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2359315_2361217_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2361265_2362060_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2362072_2363074_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2363070_2363520_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2363569_2364418_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2364515_2365058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2365101_2366052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2373348	2428939	4126037	transposase	uncultured_Caudovirales_phage(25.0%)	47	NA	NA
WP_010929588.1|2373348_2374299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2374397_2374694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2374800_2375718_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2375722_2376436_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2376449_2377421_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2379170_2379521_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2379524_2380712_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2381150_2381873_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2382166_2383117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2383113_2383542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2384943_2385906_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2386021_2386975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2386984_2387977_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2388028_2388784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2388848_2389538_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2389759_2390710_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2390740_2391937_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2391927_2392707_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2392819_2393746_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2393831_2394776_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2394753_2395623_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2395866_2396490_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247905.1|2396804_2397104_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2397117_2400192_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2400321_2400996_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2400988_2402803_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2402856_2403804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2403908_2404859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2405411_2407037_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2407086_2408121_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2408123_2409470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2409466_2410981_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2410971_2411982_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2412455_2413397_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2413405_2414374_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2415913_2416882_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2417059_2418049_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2418095_2418854_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2419043_2419781_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2419879_2420830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2421014_2421797_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2421790_2422492_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2422731_2423334_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2424660_2425611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2425607_2427164_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2427156_2427930_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2427988_2428939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2464888	2531216	4126037	transposase	Ectocarpus_siliculosus_virus(11.11%)	54	NA	NA
WP_005012067.1|2464888_2465839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2465858_2466764_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2466841_2467540_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2467699_2468644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2468653_2470141_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2470140_2471208_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2471271_2472684_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2472869_2474090_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2474111_2475062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811159.1|2475160_2475811_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2475928_2477731_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2479382_2480288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2480469_2481846_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2482012_2482753_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2482889_2483816_+	YicC family protein	NA	NA	NA	NA	NA
WP_010926696.1|2484381_2484666_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2484724_2486215_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2486459_2487059_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2487063_2487834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2488071_2488785_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2488781_2489699_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2489834_2490467_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2490508_2490712_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2490736_2493016_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2493028_2493757_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2493753_2494413_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2494481_2495234_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2495415_2496366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2497258_2498164_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994740.1|2498181_2499303_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2499391_2500006_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2500663_2501851_-	cupin	NA	NA	NA	NA	NA
WP_033446228.1|2501847_2504445_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2504699_2504915_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2505370_2505925_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2506192_2506753_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2506864_2508169_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2508165_2509677_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2509782_2510784_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2510773_2511886_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2511984_2512935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2512931_2513558_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2513617_2514469_+	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_033446226.1|2514635_2515172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2515168_2515933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2516002_2516953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2517051_2517660_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2517710_2518037_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2518083_2520309_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2520976_2524381_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2524393_2527054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2527257_2528460_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2529146_2530259_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2530265_2531216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2559261	2621562	4126037	tRNA,transposase	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2559261_2560212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2560310_2561081_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2561077_2561749_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2561745_2562387_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2562399_2563320_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2563480_2564641_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2564682_2565633_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2566231_2566456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2566620_2568315_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2568436_2568706_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2568821_2569220_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2569230_2570187_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2570323_2570869_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2570889_2572839_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2573226_2574003_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2574008_2574401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2574822_2575773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2575769_2576867_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2576898_2577849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2579630_2580872_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2580883_2581657_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2581683_2582634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2582732_2583515_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2583603_2584830_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2585555_2586941_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2586959_2587565_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2587561_2589418_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2589414_2590215_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2590229_2591423_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2591490_2592465_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2592587_2593811_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2593921_2596126_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2596420_2597080_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2597087_2597294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2597632_2598388_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2598658_2599174_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2599446_2599764_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2599951_2600188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2600478_2601834_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2601880_2603221_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2603322_2603955_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2603954_2606324_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2606356_2607316_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2607302_2607989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2607985_2608318_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2608433_2609384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2609380_2611447_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2611446_2611719_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2612413_2612503_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2612502_2614287_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2614310_2616476_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2616486_2617086_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2619907_2620603_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2620611_2621562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2707679	2748348	4126037	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005012067.1|2707679_2708630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2708740_2708923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2709022_2709619_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2709802_2710894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2711393_2711804_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2711862_2712192_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2712209_2714627_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2714639_2715662_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2715736_2716096_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2716111_2716309_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2716644_2717595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2717789_2718239_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2718235_2719186_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2719296_2720745_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2720859_2721105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2721244_2722195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2722439_2723153_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2723275_2723503_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2723797_2724436_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2724544_2725579_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2725575_2726526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2726941_2727466_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2727469_2727739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2727937_2728999_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2729082_2730717_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2730718_2731522_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2731550_2732510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2732513_2734028_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2734064_2735069_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2735500_2735971_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2736006_2736618_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2736648_2737272_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2737352_2738885_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2738919_2740137_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2740204_2741236_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2741232_2742402_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2742395_2743076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2743237_2744080_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2744242_2745214_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2745385_2746264_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2746286_2747357_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2747397_2748348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2803813	2876683	4126037	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2803813_2804230_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2804340_2804973_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2805001_2805445_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2805466_2806558_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2806612_2807413_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2807548_2808169_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2808308_2808782_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2809921_2810872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2810868_2818530_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2818770_2822817_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2823129_2823711_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2823707_2825006_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2825085_2826114_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2826374_2827325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2827321_2828272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2828588_2829194_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2829247_2830561_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2830635_2831106_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2831105_2831894_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2831904_2833557_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2833644_2834595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2835756_2836263_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2836259_2837024_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2837039_2837324_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2837388_2838378_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2838549_2839479_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2839450_2840137_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2840170_2840716_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2840760_2842026_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2842022_2842925_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2844106_2845051_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2845145_2846663_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2846704_2848333_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2848440_2849322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2852434_2852809_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2852833_2853172_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2853215_2854850_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2854888_2856235_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2856342_2857764_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2857833_2858418_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2858520_2859471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2859605_2860712_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2860722_2861820_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2861964_2863170_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2863176_2863698_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2863694_2864177_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2864182_2864434_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2864414_2864900_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2865035_2868497_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2868514_2869399_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2869408_2869840_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2870086_2870590_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2870667_2872068_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2872142_2873018_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2873014_2874022_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2874489_2874795_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2874885_2875476_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929632.1|2875666_2876683_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2879826	2945587	4126037	transposase,protease	uncultured_Mediterranean_phage(28.57%)	48	NA	NA
WP_005013747.1|2879826_2880777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2880773_2881568_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2881599_2882304_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2882378_2883179_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2883175_2883583_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2883579_2884221_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2884213_2886214_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2887474_2888806_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2888802_2889753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2891459_2891726_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2892433_2892772_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2897324_2897927_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2898023_2899313_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2899370_2900102_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2900098_2900902_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2900898_2901987_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2901983_2902913_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2903061_2904207_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2904228_2905179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2905509_2909331_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2909487_2910156_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2910160_2911834_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2911852_2913172_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2913176_2915492_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2915547_2917716_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2917712_2922893_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2922991_2923306_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2923533_2923779_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2923873_2924392_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2924491_2925697_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2925812_2927210_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2927326_2927905_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2927977_2929369_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2929536_2930487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2930767_2931388_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2931384_2931798_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2931794_2932838_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2932893_2933082_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2933091_2933856_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2933946_2934603_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2934694_2935453_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2935478_2937080_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2937280_2938285_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2938385_2938649_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2938766_2939543_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2940133_2941084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2943467_2944580_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2944636_2945587_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	2975973	3019664	4126037	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2975973_2976924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2977044_2977941_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2980218_2982444_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2982608_2983697_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2983653_2984307_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2984354_2985152_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2985683_2986634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2986714_2987863_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2987919_2988870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2988968_2989274_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2989302_2989737_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2989738_2990983_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2990979_2991690_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2991704_2992616_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2992978_2993383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2993379_2993838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2993844_2994753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2994749_2995616_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2995602_2996430_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2996440_2997568_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2998645_2999884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2999925_3001188_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3001194_3001947_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3001998_3002184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3002459_3002924_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3002955_3003615_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3003759_3005868_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3005864_3006815_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3006918_3007539_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3007642_3008383_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3009517_3010642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3010687_3011056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3011297_3012248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3013283_3013826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095586259.1|3014211_3015162_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3015158_3016067_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3016193_3017030_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3017542_3018652_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3018713_3019664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	3400687	3454428	4126037	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3400687_3401638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3402042_3402687_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3402711_3403296_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3403396_3404014_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3404016_3405732_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3405728_3406037_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3406053_3406671_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3406715_3407018_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3407118_3407973_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3408160_3408385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3408554_3408827_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3409244_3409652_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3410021_3410816_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3410916_3412152_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3412220_3413237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3413248_3414625_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3414621_3415818_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3415814_3417353_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3417349_3418609_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3420549_3421500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3422266_3423361_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3423353_3424688_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3424641_3425325_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3425350_3426514_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3426510_3427512_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3427511_3428384_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3428380_3429130_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3429126_3429918_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3429914_3431054_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3431329_3432115_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3432148_3432931_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3432934_3433324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3434463_3435327_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3435362_3436451_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3436447_3437398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3437751_3440730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3441656_3442535_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3444483_3445434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3445430_3445898_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3445940_3446711_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3446731_3447532_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3447542_3448952_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3449046_3449832_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3450071_3451088_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3451195_3451588_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3451725_3452406_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3452410_3453382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3453477_3454428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	3460582	3519882	4126037	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3460582_3462346_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3462457_3463336_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3463448_3464264_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3464267_3464519_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3464603_3465620_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3465950_3466172_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3468532_3469450_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3469947_3471156_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3471235_3472807_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3472924_3473860_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3474048_3474993_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3475560_3481278_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3481283_3482411_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3482466_3483093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3483364_3484381_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3484476_3485187_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3485183_3486173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3486268_3487900_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3487902_3488640_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3488795_3489668_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3490017_3491157_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3491153_3491813_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3491884_3492517_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3492546_3493065_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3493075_3494185_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3494231_3495086_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3495087_3495990_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3497212_3498163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3499919_3500909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3501084_3501873_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3501869_3502901_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3502919_3503483_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3503538_3505059_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3505322_3506027_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3506034_3506763_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3506877_3507252_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3507294_3508584_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3508580_3509750_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3509746_3510586_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3510645_3511581_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3511593_3512544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3512642_3513605_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3513636_3513996_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3514120_3515023_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3515024_3516797_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3516831_3517608_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3518931_3519882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	3534820	3592893	4126037	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3534820_3535771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3535899_3537033_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3537076_3537982_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3537984_3539685_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3539681_3540602_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3540609_3541587_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3541645_3542680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3544654_3544891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3545017_3545881_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3545969_3546791_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3546870_3547608_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3547604_3548597_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3548749_3549373_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3549417_3550566_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3552889_3553840_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3554180_3555131_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3555229_3556180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3556476_3556974_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3557016_3558792_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3558799_3559666_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3559672_3560407_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3561576_3562371_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3562660_3563251_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3563284_3564613_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3564687_3565833_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3565944_3566943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3566905_3567340_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3568856_3569741_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3569737_3570943_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3570939_3571800_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3571912_3573703_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3573743_3574388_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3574409_3574718_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3574883_3576170_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3577603_3578554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3580505_3581720_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3581825_3582815_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3582811_3583420_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3583432_3584062_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3584058_3584679_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3584710_3585502_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3586353_3586809_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3586827_3587754_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3587807_3589094_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3590024_3590897_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3590893_3591844_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3591942_3592893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP016957	Bordetella pertussis strain B226 chromosome, complete genome	4126037	4025105	4090017	4126037	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4025105_4025591_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4025679_4025817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4025809_4026790_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4027056_4027866_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4027905_4028586_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4028579_4029038_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4029049_4029412_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4029494_4030178_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4030233_4030542_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4030560_4030875_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4030871_4033346_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4033353_4034745_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4034741_4034927_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4034905_4035607_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4035603_4036425_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4036405_4037530_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4037522_4038542_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4038747_4039638_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4039882_4040674_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4040756_4041131_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4041108_4042518_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4042510_4043893_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4044227_4045832_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4045909_4046881_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4046891_4047818_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_077069022.1|4048208_4049159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4049328_4050555_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4050754_4051621_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4051613_4052576_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4052676_4053627_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|4053725_4054676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4054774_4055725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4055721_4057215_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4057211_4060319_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4060315_4063384_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4063380_4064631_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4064811_4065564_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4065605_4066250_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4066258_4067239_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4067338_4068082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4068164_4068512_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4068609_4069452_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4069496_4070384_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4070410_4070599_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4070696_4072154_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4072140_4073667_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4073685_4074153_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4074152_4075175_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4075295_4076036_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4076090_4077191_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4077192_4078383_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4078502_4079519_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4079837_4080509_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4080505_4081414_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4081625_4082273_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4086133_4087201_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4087211_4088021_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4088110_4088884_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4089066_4090017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
