The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	0	71086	4127835	tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_095585336.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248465.1|65117_65435_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65538_66597_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66631_67903_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68532_69714_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|70135_71086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	78684	137158	4127835	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_076879548.1|78684_79635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79709_80654_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80650_82525_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83872_84577_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84573_85680_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85941_86535_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86531_87719_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87781_89041_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89064_90153_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90160_91261_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91264_91840_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91843_92896_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93026_94034_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94035_95322_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95338_95494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95518_96322_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96318_97185_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_080362530.1|97253_98390_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98389_99229_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100161_100764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100793_101447_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101579_102836_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|102838_103783_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103858_104134_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104141_104804_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104865_105867_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105881_106430_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106487_107384_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107380_108442_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108477_109428_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110327_111521_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111602_112232_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112293_112977_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112986_114669_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114956_115304_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115394_115712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115994_117011_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117086_117887_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117883_118759_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118769_120062_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120104_121145_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121250_122072_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122172_123123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123221_124127_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124123_124957_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125793_126804_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126800_127190_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128083_129337_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129427_131128_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131554_132202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132200_133640_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|133732_134035_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|134062_134941_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136207_137158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	165944	226455	4127835	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|170178_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|175186_175366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|182384_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	glyoxalase	NA	NA	NA	NA	NA
WP_050830732.1|190133_190553_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190581_191028_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194125_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_077108686.1|195456_196407_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|196452_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_010929674.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206686_207637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207793_208117_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|208221_209271_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|209267_210092_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210092_210389_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210414_210690_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210746_211391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211390_212077_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212206_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213108_213834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215326_216259_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216716_219512_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220105_223048_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223119_223839_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223877_224426_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	234386	289023	4127835	protease,tRNA,transposase	Bacillus_phage(25.0%)	50	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|237307_237481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268762_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|275150_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|279239_280190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|280176_280392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280467_280629_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280636_280777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281295_281745_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281754_282366_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|282524_283379_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283398_284781_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284845_285487_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285626_286085_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286109_286886_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286939_288076_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288072_289023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	357017	416486	4127835	tRNA,transposase	Streptococcus_phage(50.0%)	58	NA	NA
WP_005012067.1|357017_357968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|358079_358802_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|358900_359644_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|359874_361383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|361502_362234_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|362278_363739_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|363763_364243_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|364261_365272_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|365486_366227_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_024000637.1|366418_367408_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010930363.1|367404_368355_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929765.1|368453_369404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|370452_371091_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_076879616.1|371127_372522_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|372893_373682_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_003817729.1|373786_374494_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|374607_376062_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|376064_377603_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|377605_377914_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|378144_379188_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|379276_380161_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|380147_380711_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|380724_382677_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|382673_383810_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|383835_384891_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|384901_386395_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|386607_387183_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|387232_387979_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|387978_388881_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|389142_389931_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|390071_390563_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|390559_391303_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003815188.1|391299_391902_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
WP_100208326.1|391901_392378_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|392502_393441_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|393437_394010_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|394006_394957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|394943_395111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|395093_396011_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|396007_396256_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|396252_397458_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|397530_398526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|398548_399769_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|399765_400410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|402140_402950_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|403167_404208_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|404176_404320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|404306_405290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|405216_405918_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|405966_406737_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|406733_407975_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|408079_409786_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|409782_410679_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|410719_412309_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|412358_413351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|413419_414019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|414479_415457_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|415535_416486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	591471	652659	4127835	protease,transposase	uncultured_Mediterranean_phage(40.0%)	57	NA	NA
WP_005013747.1|591471_592422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592897_593788_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593784_594606_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|613547_614543_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_050869187.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|620916_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621668_621833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625095_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|638776_638941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640145_641579_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|642117_642786_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648341_649223_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	657977	705223	4127835	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(18.18%)	52	NA	NA
WP_003814219.1|657977_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|680590_680803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|681959_682280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|682272_682971_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|682985_683207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|684850_685300_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|691438_692086_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692893_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|694757_695708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931435.1|696114_696633_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696642_696972_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696989_697280_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697305_699918_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699927_700287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700354_700888_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700884_701274_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701266_705223_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	711389	765319	4127835	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|711389_713120_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713172_713601_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713603_714284_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714283_714742_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714778_715753_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715769_717086_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717117_717615_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717701_718391_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718390_719440_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719436_720231_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720399_720750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720725_721283_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|722207_722426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|722412_723363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|725641_726730_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726732_728175_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728279_729425_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729456_730254_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730278_731838_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731834_734207_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734316_735420_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735419_736112_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736255_736957_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736941_737319_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738050_739001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157734657.1|738987_739131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|739160_740033_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740373_740592_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740631_742011_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742052_743450_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743489_745142_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745145_746030_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746029_746971_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747049_748669_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748835_749651_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749718_750288_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750288_751239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751893_752991_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753024_754290_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|754447_755398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755641_756232_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756247_758692_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758811_759783_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759914_760439_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760398_761349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761570_763766_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763838_764246_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|764193_764382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|764368_765319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	856197	917073	4127835	transposase	Vibrio_phage(25.0%)	52	NA	NA
WP_005012067.1|856197_857148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446246.1|857120_857720_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857721_858156_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858152_858587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858570_859374_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859390_860206_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|860202_861018_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861164_861866_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861893_863852_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863934_864885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302772.1|864871_865030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930032.1|865105_865774_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865897_867004_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|867016_870130_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|870126_871620_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|871634_872306_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|872349_872844_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872984_873632_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|873735_875784_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|875780_877793_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|877818_879153_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|879261_880254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|880320_882405_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|882429_883401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_015040266.1|883529_884531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813985.1|884564_885806_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|885886_886810_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886887_887712_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887908_888925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889121_890105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891703_893092_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893122_894112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894222_895455_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895736_896537_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896559_898791_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899578_900025_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900046_900793_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900936_901914_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902547_903159_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903152_904370_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904510_905461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905457_906177_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906297_908457_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908547_908817_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908905_909112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909110_909638_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909656_910436_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910603_911620_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911692_912184_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912194_913910_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915073_916024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|916122_917073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	937828	1072981	4127835	tRNA,transposase	uncultured_Caudovirales_phage(10.0%)	120	NA	NA
WP_005012067.1|937828_938779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|938831_939053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|939212_939425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|939544_940663_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|940759_940975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|941168_941420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|941532_942483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|942479_942863_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|942917_944735_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|944881_945709_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|945754_946735_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|946731_946944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|946940_948122_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|948285_949020_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|949021_951634_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|951769_953683_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|954298_954709_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|954806_955892_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|955990_956941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|956937_957912_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|958036_958948_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|959224_959617_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_124740670.1|959505_959760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|959746_960697_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|960726_960909_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|961681_962863_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|963078_963756_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_077274086.1|963752_964526_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930094.1|964603_965185_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|965555_968237_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|968236_969370_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|969362_970448_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|970534_971434_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|971430_972759_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|972773_973445_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_003821510.1|973617_975348_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|975349_975709_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|975900_976215_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|976257_977478_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|977474_978416_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|978412_979402_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|979436_980021_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|980119_981070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|981150_982062_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|982122_983268_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|983287_984202_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|984273_985023_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|985022_985952_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|986195_988022_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|988104_988746_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|988935_989970_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|991806_992871_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|993668_994577_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|996064_997339_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|997492_997873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|997880_998753_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|999058_999439_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|999649_1000375_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1000470_1001421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1001525_1002575_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1002712_1003729_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1005237_1005810_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1005869_1006601_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1006652_1007570_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1008377_1011557_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1011553_1012936_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1013005_1013257_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1013402_1014053_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1014203_1016318_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1016393_1017245_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1017241_1017868_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1017864_1019619_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1019911_1022617_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1022629_1024291_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1024303_1026094_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1026315_1027491_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1027533_1028484_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028582_1029323_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029517_1031554_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031571_1032582_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032699_1033893_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033922_1034696_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034692_1035883_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035908_1036847_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036843_1039192_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1039346_1040054_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1040091_1041225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1041317_1041470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041501_1042050_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1042068_1042554_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042731_1043670_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043672_1043990_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1044035_1044980_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1045000_1046476_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1046660_1047311_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1047364_1047700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047696_1048557_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048573_1048855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048928_1049192_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1049435_1050386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050684_1051422_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051857_1052181_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1052215_1052776_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052896_1053772_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053784_1054732_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054833_1055127_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1055153_1057211_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1057225_1057726_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057799_1059506_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1060369_1061422_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1061474_1061864_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061872_1062505_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930525.1|1062604_1063621_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1064451_1065459_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065455_1067099_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1067095_1067998_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1068123_1068597_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068586_1069609_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069605_1071033_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071964_1072981_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	1076734	1139844	4127835	tRNA,transposase,holin	Catovirus(20.0%)	55	NA	NA
WP_010930155.1|1076734_1077871_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077867_1078941_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079098_1080535_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080625_1081267_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1081602_1082619_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1082951_1085684_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1085750_1087172_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087435_1088152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088236_1088554_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088594_1089008_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089009_1089369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089411_1090956_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091039_1091870_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1091904_1093059_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093101_1093974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094090_1096379_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097585_1098050_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098076_1099027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157734659.1|1099044_1099182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099394_1100171_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100215_1101073_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101094_1102111_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102245_1103286_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103480_1105562_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105797_1107291_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107521_1108316_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108536_1109895_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109891_1110734_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110752_1112639_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1112876_1113509_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113527_1114130_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1114133_1114295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1114281_1115232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_095585337.1|1115330_1116281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1117083_1117884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1117927_1118914_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1119053_1120067_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_095585337.1|1120063_1121014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1121112_1122063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1122080_1122221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1122175_1122634_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1122670_1123984_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1124001_1124373_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1124369_1125833_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_003812697.1|1125925_1126702_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_076879621.1|1126683_1129563_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1129745_1130696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1130863_1131688_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1131687_1132566_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1133470_1134586_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930187.1|1134593_1135409_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930188.1|1135405_1137271_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1137349_1137982_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1137978_1138281_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1138323_1139844_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	1157414	1223005	4127835	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_095585338.1|1157414_1159211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1159210_1160179_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1160248_1161094_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1161161_1161716_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_005012067.1|1161762_1162713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_095585339.1|1162811_1163444_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1163615_1165898_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1166052_1168749_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1168874_1169363_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1171773_1174644_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1174689_1175904_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1176133_1177561_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1177601_1178750_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1178762_1179521_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1179608_1180511_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1180507_1181458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1181587_1182571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1182625_1183348_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1184826_1186182_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1186262_1188638_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1188802_1190878_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1190939_1191740_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1191841_1192804_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1192791_1193547_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1193654_1195292_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1195359_1196097_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1196199_1196775_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1196947_1197484_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1197486_1197831_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1197846_1198692_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1198730_1200110_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1200187_1201069_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1201167_1202118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1202216_1203167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1203163_1203574_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1203681_1204536_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1204528_1205491_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1205536_1206661_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1206772_1207645_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1207769_1208549_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1208702_1210124_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1210558_1212256_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1212284_1212407_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1212482_1213424_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1213750_1214497_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1214504_1215431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1215552_1216470_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1216509_1217463_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1217487_1218066_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1219739_1220348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1220425_1220779_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1220862_1221852_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1221848_1222037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995294.1|1222054_1223005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	1385570	1452070	4127835	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1385570_1386521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1386586_1386766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1386882_1387605_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1387624_1388770_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010929588.1|1389677_1390628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1390815_1392018_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1392014_1392773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1393166_1393799_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1394754_1397355_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1397342_1400762_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1400769_1401675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1401813_1402392_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1402388_1403300_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1403313_1403994_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1404195_1406235_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1406253_1407240_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1407265_1408063_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1408059_1409253_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1409249_1410212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1410229_1411270_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1411257_1411866_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1413454_1414450_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1414469_1415648_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1415658_1416576_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1416631_1417582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1417680_1418451_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1418447_1419128_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1419194_1419983_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929632.1|1420229_1421246_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1421551_1422706_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1427211_1427694_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1427711_1428002_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1428128_1428839_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1429022_1429430_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1429442_1429862_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1429909_1430614_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1430679_1432101_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1432139_1432904_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1432947_1433733_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1433732_1434422_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1434424_1435558_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1435575_1436598_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1436667_1438314_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1438347_1439880_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1439958_1441779_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1441899_1443519_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1443697_1445140_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010931363.1|1445356_1446373_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1446419_1447208_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1447230_1447500_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1447516_1448308_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1448319_1448661_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1448671_1449172_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1449164_1450175_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1450177_1450750_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1451119_1452070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2249814	2315363	4127835	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2249814_2250765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2250751_2250910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2250965_2251775_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2251899_2252850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2252846_2253740_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2253864_2254059_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2254058_2254400_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2254409_2256272_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2256401_2256914_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2256916_2257240_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2257241_2257652_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2257689_2258901_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2258918_2259431_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2259646_2260138_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2260390_2262427_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2262504_2263707_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2263757_2264486_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_010929591.1|2266043_2266994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2267564_2267777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2267794_2268526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2268560_2269202_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2269194_2269911_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2272075_2272852_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2272873_2274031_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2274027_2274459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2274455_2275259_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2275272_2275728_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2275740_2276712_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2276777_2278001_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2278228_2279179_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2279302_2281756_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2281944_2283249_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2283353_2284007_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2284009_2285320_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2285498_2286077_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2286188_2286389_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2286734_2287301_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2287384_2287588_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2287894_2288215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2288256_2288538_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2288612_2289869_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2290251_2290581_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2292151_2292973_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2292972_2294112_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2294118_2295015_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2295011_2296937_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2297296_2299909_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2299961_2302262_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2302258_2303467_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2303728_2304103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931359.1|2304099_2305050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2305148_2307143_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2307202_2308168_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2308157_2311019_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2311021_2311528_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2311632_2312841_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2312842_2313781_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2313942_2314416_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2314412_2315363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2328864	2376361	4127835	tRNA,transposase	uncultured_Mediterranean_phage(14.29%)	45	NA	NA
WP_005012067.1|2328864_2329815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274081.1|2329913_2330633_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_029443816.1|2330709_2331258_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2331239_2333255_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2333437_2334187_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2334199_2335063_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2335066_2336482_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2336615_2337344_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2337482_2337683_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2337858_2338257_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2338280_2339681_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2339799_2340552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2340840_2341518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2341544_2342324_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2342320_2343205_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_077274094.1|2343222_2343912_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_010930526.1|2343986_2344745_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2344870_2345518_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2345785_2346802_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2346899_2347940_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2348074_2349367_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2350726_2351110_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2351127_2351715_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010929591.1|2351752_2352703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2353687_2354461_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2354457_2355456_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2355540_2356317_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2356472_2358140_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2358457_2359582_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2359708_2360332_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2360328_2362230_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2362278_2363073_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2363085_2364087_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2364083_2364590_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2364582_2365431_-	hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|2365492_2366443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|2366577_2367120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2367163_2368114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2368269_2368596_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2368592_2368877_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2368873_2369353_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2369349_2370978_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2370974_2371319_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2371318_2374252_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2375410_2376361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2403882	2475036	4127835	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2403882_2404833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2405385_2407011_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2407060_2408095_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2408097_2409444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2409440_2410955_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2410945_2411956_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2412429_2413371_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2413379_2414348_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2415887_2416856_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2417033_2418023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2418069_2418828_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2419017_2419755_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_023996205.1|2419705_2419867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2419853_2420804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2420988_2421771_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2421764_2422466_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2422705_2423308_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_153302778.1|2424492_2424648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2424634_2425585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2425581_2427138_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2427130_2427904_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2427962_2428913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2428994_2430170_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2430183_2432241_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2432237_2433263_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2433274_2434564_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2434586_2435684_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2435680_2436571_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2436567_2438652_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2438683_2439853_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2439894_2440635_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2440634_2441405_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2442260_2443046_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2443072_2445157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2445324_2447280_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2447603_2448104_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2448202_2449729_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2449866_2450754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2450768_2451722_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2451773_2453864_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2453879_2454266_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2456959_2457763_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2459056_2459959_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2460023_2460800_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2461121_2462171_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2462294_2463965_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2463969_2464764_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2464862_2465813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2465832_2466738_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2466815_2467514_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2467673_2468618_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2468627_2470118_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2470114_2471182_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2471245_2472658_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2472843_2474064_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2474085_2475036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2531283	2584696	4127835	tRNA,transposase	Planktothrix_phage(15.38%)	57	NA	NA
WP_005012067.1|2531283_2532234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302776.1|2532220_2532394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809561.1|2532332_2532734_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248504.1|2532806_2533385_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930416.1|2533502_2533991_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_010930415.1|2534004_2534937_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
WP_019247927.1|2534974_2535862_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
WP_003819848.1|2536019_2537714_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
WP_003819847.1|2537730_2538987_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003819845.1|2539124_2539670_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930411.1|2539701_2541261_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
WP_010930410.1|2541389_2542142_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
WP_010930409.1|2542163_2542856_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930408.1|2542878_2543670_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003809536.1|2543696_2544602_-	arginase	NA	NA	NA	NA	NA
WP_003819839.1|2544794_2545631_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809532.1|2545722_2546745_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
WP_010930407.1|2546881_2547934_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
WP_010930406.1|2547938_2549129_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_003809525.1|2549131_2549611_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
WP_010930405.1|2549796_2550276_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930404.1|2550283_2550520_-	membrane protein	NA	NA	NA	NA	NA
WP_003809516.1|2550539_2550941_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_047122780.1|2550943_2551195_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_003809513.1|2551249_2552131_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
WP_003819827.1|2552355_2552802_+	GFA family protein	NA	NA	NA	NA	NA
WP_003809510.1|2552886_2553951_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_019247931.1|2554087_2554669_-	molybdenum cofactor biosysynthesis protein	NA	NA	NA	NA	NA
WP_010930401.1|2554903_2556034_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930400.1|2556211_2557438_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
WP_003809503.1|2557496_2558012_+	transporter	NA	NA	NA	NA	NA
WP_010930399.1|2558034_2558361_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_010930398.1|2558394_2559585_+	NAD-dependent formate dehydrogenase	NA	NA	NA	NA	NA
WP_003819820.1|2559658_2560063_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2560279_2561230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2561328_2562099_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2562095_2562767_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2562763_2563405_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2563417_2564338_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2564498_2565659_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2565700_2566651_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2567249_2567474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2567638_2569333_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2569454_2569724_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2569839_2570238_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2570248_2571205_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2571341_2571887_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2571907_2573857_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2574244_2575021_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2575026_2575419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2575840_2576791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2576889_2577840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2577836_2578934_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2578965_2579916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2581692_2582934_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2582945_2583719_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2583745_2584696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2710790	2751459	4127835	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2710790_2711741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2711851_2712034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2712133_2712730_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2712913_2714005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2714504_2714915_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2714973_2715315_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2715320_2717738_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2717750_2718773_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2718847_2719207_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2719222_2719420_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005012808.1|2719755_2720706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2720692_2720854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2720900_2721350_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2721346_2722297_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2722283_2722424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2722407_2723856_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2723970_2724252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2724204_2724369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2724355_2725306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2725550_2726264_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2726386_2726614_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2726908_2727547_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2727619_2728690_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2728686_2729637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2730052_2730577_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2730580_2730850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2731048_2732110_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2732193_2733828_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2733829_2734633_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2734661_2735621_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2735624_2737139_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2737175_2738180_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2738611_2739082_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2739117_2739729_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2739759_2740383_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2740463_2741996_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2742030_2743272_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2743315_2744347_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2744343_2745513_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2745506_2746187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2746348_2747191_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2747353_2748325_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2748496_2749375_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2749397_2750468_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2750508_2751459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2805875	2871860	4127835	tRNA,transposase	Moraxella_phage(20.0%)	51	NA	NA
WP_003810909.1|2805875_2806292_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2806402_2807035_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2807063_2807507_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2807528_2808620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2808674_2809475_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2809610_2810231_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2810370_2810844_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2811983_2812934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2812930_2820592_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2820832_2824879_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2825191_2825773_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2825769_2827068_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2827147_2828176_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2828099_2828450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2828436_2829387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2829383_2830334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2830650_2831256_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2831309_2832623_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2832697_2833168_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2833167_2833956_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2833966_2835619_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2835706_2836657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2837818_2838325_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_095585342.1|2838321_2839086_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2839101_2839386_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2839450_2840440_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2840611_2841541_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2841512_2842199_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2842232_2842778_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2842822_2844088_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2844084_2844987_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2846168_2847113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2847207_2848725_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2848766_2850395_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_050817344.1|2850502_2851384_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2854496_2854871_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2854895_2855234_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2855277_2856912_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2856950_2858297_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2858404_2859826_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2859895_2860480_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2860582_2861533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2861667_2862774_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2862784_2863882_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2864026_2865232_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2865238_2865760_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2865756_2866248_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2866244_2866496_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2866476_2866962_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_095585343.1|2867097_2870547_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2870909_2871860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2878765	2945231	4127835	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_010930153.1|2878765_2879782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2879973_2882310_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2882392_2882827_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2882925_2883876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2883872_2884667_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2884698_2885403_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2885477_2886278_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2886274_2886682_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2886678_2887320_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2887312_2889334_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2890573_2891905_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2891901_2892852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2894558_2894825_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2895532_2895871_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_077069211.1|2897199_2900184_-	autotransporter BapC	NA	NA	NA	NA	NA
WP_010931107.1|2900422_2901025_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2901121_2902411_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2902468_2903200_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2903196_2904000_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2903996_2905085_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2905081_2906011_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2906159_2907305_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2907326_2908277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2908294_2908453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2908607_2912429_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2912585_2913254_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2913258_2914932_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2914950_2916270_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2916274_2918626_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2918645_2920814_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2920810_2926000_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2926089_2926404_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2926631_2926877_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2926971_2927490_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2927589_2928795_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2928910_2930308_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2930424_2931003_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2931075_2932467_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2932634_2933585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2933865_2934486_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2934482_2934896_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2934892_2935936_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2935991_2936180_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2936189_2936954_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2937044_2937701_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2937792_2938551_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2938576_2940178_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2940378_2941383_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2941483_2941747_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2941864_2942641_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2943231_2944182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2944280_2945231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	2980120	3074157	4127835	transposase	Bacillus_virus(27.27%)	91	NA	NA
WP_005012067.1|2980120_2981071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2981057_2981303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2981191_2982088_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2984365_2986591_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2986755_2987844_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2987800_2988454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2988501_2989299_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2989830_2990781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2990861_2992010_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2992066_2993017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2993003_2993222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2993115_2993421_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2993449_2993884_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2993885_2995130_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2995126_2995837_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2995851_2996763_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2997125_2997530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2997526_2997985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2997991_2998900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2998896_2999763_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2999749_3000577_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3000587_3001715_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3002792_3004031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3004072_3005335_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3005341_3006094_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3006145_3006331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3006606_3007071_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3007102_3007762_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3007906_3010015_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|3010011_3010962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3011065_3011686_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3011789_3012530_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3013664_3014789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3014834_3015203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3015444_3016395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3017430_3017973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|3018165_3018372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3018358_3019309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3019305_3020271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3020340_3021177_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|3021653_3022799_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3022860_3023811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3024003_3024786_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3024799_3025549_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3025576_3026923_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3026948_3027878_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3027993_3028899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3028997_3029948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931163.1|3029965_3031165_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3031237_3031930_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3031978_3034405_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3034449_3035400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698394.1|3035417_3035564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809026.1|3035616_3035985_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3036271_3037198_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3037241_3038252_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3038248_3038683_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3039808_3040597_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3040606_3041389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3041392_3042484_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3042589_3044065_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3044206_3044755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3044770_3045232_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3045332_3046322_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3046620_3047322_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3047360_3048734_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3048772_3050059_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3050945_3051848_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3051795_3053016_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3053012_3053522_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3053511_3054207_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3054277_3055147_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3055496_3056447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3057307_3057997_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3058773_3059736_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3059739_3060600_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3060593_3060986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486092.1|3061016_3062189_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_014486094.1|3063640_3064438_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3064471_3065251_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|3065279_3066152_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|3066173_3066923_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3066930_3067788_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3067828_3068392_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3068422_3068719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3068799_3069603_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|3069623_3070820_-	CoA transferase	NA	NA	NA	NA	NA
WP_095585345.1|3070822_3071824_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3072176_3072347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3072441_3073104_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3073206_3074157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	3398284	3452025	4127835	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_010929956.1|3398284_3399235_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3399639_3400284_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3400308_3400893_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3400993_3401611_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3401613_3403329_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3403325_3403634_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3403650_3404286_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3404312_3404615_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3404715_3405570_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3405757_3405982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3406151_3406424_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3406841_3407249_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3407618_3408413_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3408513_3409749_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3409817_3410834_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3410830_3412222_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3412218_3413415_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3413411_3414950_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3414946_3416206_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3418146_3419097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3419083_3419260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3419863_3420958_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3420950_3422285_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3422238_3422922_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3422947_3424111_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3424107_3425109_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3425108_3425981_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3425977_3426727_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3426723_3427515_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3427511_3428651_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3428959_3429712_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3429745_3430528_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3430531_3430921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3432060_3432924_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3432959_3434048_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3434044_3434995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3434981_3435395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3435348_3438327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3439253_3440132_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3442080_3443031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3443027_3443495_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3443537_3444308_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3444328_3445129_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3445139_3446549_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3446643_3447429_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3447668_3448685_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3448792_3449185_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3449322_3450003_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3450007_3451006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3451074_3452025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	3458179	3517479	4127835	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3458179_3459943_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3460054_3460933_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3461045_3461861_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3461864_3462116_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3462200_3463217_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3463547_3463769_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3466129_3467047_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3467544_3468753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3468832_3470404_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3470521_3471457_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3471645_3472590_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3472658_3472874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3473157_3478875_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3478880_3480008_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3480063_3480690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3480961_3481978_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3482073_3482784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3482780_3483770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3483901_3485497_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3485499_3486237_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3486392_3487265_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3487533_3488754_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3488750_3489410_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3489481_3490114_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3490143_3490662_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3490672_3491782_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3491828_3492683_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3492684_3493587_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3494809_3495760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3497516_3498506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3498681_3499470_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3499466_3500498_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3500516_3501080_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3501135_3502656_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3502919_3503624_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3503631_3504369_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3504474_3504849_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3504891_3506181_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3506177_3507347_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3507343_3508183_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3508242_3509178_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3509190_3510141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3510239_3511202_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3511233_3511593_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3511717_3512620_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3512621_3514394_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3514428_3515205_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3516528_3517479_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	3532417	3592588	4127835	tRNA,transposase	Planktothrix_phage(12.5%)	49	NA	NA
WP_005012808.1|3532417_3533368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3533466_3534417_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3534545_3535679_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3535722_3536628_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3536630_3538331_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3538327_3539248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3539255_3540233_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3540291_3541326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3543300_3543537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3543663_3544527_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3544615_3545437_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3545516_3546254_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3546250_3547243_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3547356_3548019_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3548063_3549212_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3551535_3552486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3552826_3553777_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3553875_3554826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3554924_3555875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3556171_3556669_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3556711_3558487_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3558533_3559361_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3559367_3560102_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3561271_3562066_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3562355_3562946_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3562979_3564308_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3564382_3565528_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3565639_3566638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3566600_3567035_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3568551_3569436_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3569432_3570638_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3570634_3571495_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3571607_3573398_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3573438_3574104_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3574104_3574413_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3574578_3575865_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3577298_3578249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3580200_3581415_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3581520_3582510_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3582506_3583115_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3583127_3583757_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3583753_3584374_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3584405_3585197_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3586039_3586504_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3586522_3587449_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3587502_3588789_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3589719_3590592_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3590588_3591539_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3591637_3592588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016956	Bordetella pertussis strain E945, complete genome	4127835	4009624	4057523	4127835	transposase	Planktothrix_phage(25.0%)	54	NA	NA
WP_077074151.1|4009624_4010575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815773.1|4011122_4012019_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	4.4e-21
WP_010931637.1|4012015_4012801_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_003815777.1|4012813_4013320_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_003815778.1|4013395_4014211_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_003815780.1|4014244_4014868_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931639.1|4015782_4016598_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815785.1|4016597_4016849_+	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927222.1|4016848_4018117_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010931640.1|4018113_4018785_+	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931641.1|4018835_4020140_+	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_010931642.1|4020136_4021234_+	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_003815795.1|4021235_4021823_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_010931644.1|4021854_4022532_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_010927224.1|4022595_4023336_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_003815802.1|4023332_4024142_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_010931645.1|4024138_4024543_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA	NA
WP_003815805.1|4024539_4024887_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA	NA
WP_003815807.1|4024901_4025270_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
WP_003815808.1|4025285_4025513_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA	NA
WP_010931646.1|4025585_4026029_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003815810.1|4026025_4026826_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	32.0	4.0e-26
WP_039249574.1|4026903_4027389_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4027477_4027615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4027607_4028588_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4028854_4029664_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4029703_4030384_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4030377_4030836_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4030847_4031210_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4031292_4031976_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4032031_4032340_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4032358_4032673_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4032669_4035144_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4035151_4036543_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4036539_4036725_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4036703_4037405_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4037401_4038223_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4038203_4039328_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4039320_4040340_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4040545_4041580_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4041680_4042472_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4042554_4042929_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4042906_4044316_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4044308_4045691_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4046025_4047630_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4047665_4048679_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4048689_4049616_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4050006_4050957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4051126_4052353_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4052552_4053419_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4053411_4054374_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4054474_4055425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|4055523_4056474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4056572_4057523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
