assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002285855.1_ASM228585v1	NZ_CP016303	Candidatus Hamiltonella defensa (Bemisia tabaci) strain MEAM1, complete genome	1	168642-168743	1	CRISPRCasFinder	no		cas3,DEDDh	Orphan	AATAAGCTAGTGGTTTAAAAATAGATTTCGG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|257aa|up_9|NZ_CP016303.1_156665_157436_-,NA	NA|257aa|up_9|NZ_CP016303.1_156665_157436_-	NA	NA|256aa|up_8|NZ_CP016303.1_157893_158661_+	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase	NA|325aa|up_7|NZ_CP016303.1_158664_159639_+	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|889aa|up_6|NZ_CP016303.1_159900_162567_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|396aa|up_5|NZ_CP016303.1_162947_164135_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|186aa|up_4|NZ_CP016303.1_164240_164798_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|244aa|up_3|NZ_CP016303.1_164850_165582_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|287aa|up_2|NZ_CP016303.1_165586_166447_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|242aa|up_1|NZ_CP016303.1_166488_167214_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|282aa|up_0|NZ_CP016303.1_167793_168639_-	PRK10763, PRK10763, phospholipase A; Provisional	NA|91aa|down_0|NZ_CP016303.1_169180_169453_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|186aa|down_1|NZ_CP016303.1_176462_177020_-	COG3108, COG3108, Uncharacterized protein conserved in bacteria [Function unknown]	NA|248aa|down_2|NZ_CP016303.1_177080_177824_-	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA|783aa|down_3|NZ_CP016303.1_177816_180165_-	PRK11642, PRK11642, ribonuclease R	NA|437aa|down_4|NZ_CP016303.1_180241_181552_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|208aa|down_5|NZ_CP016303.1_181803_182427_+	PRK10884, PRK10884, SH3 domain-containing protein; Provisional	NA|641aa|down_6|NZ_CP016303.1_182858_184781_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|397aa|down_7|NZ_CP016303.1_184856_186047_-	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|377aa|down_8|NZ_CP016303.1_186085_187216_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|763aa|down_9|NZ_CP016303.1_187251_189540_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha
GCF_002285855.1_ASM228585v1	NZ_CP016303	Candidatus Hamiltonella defensa (Bemisia tabaci) strain MEAM1, complete genome	2	526617-526826	1	CRT	no		cas3,DEDDh	Orphan	AGAACCCGAGGAAGAACC	18	2	2	526635-526652|526671-526688	NZ_CP016303.1_526611-526628|NZ_CP016303.1_526611-526628	NA	5	5	Orphan	cas3,DEDDh	NA|176aa|up_1|NZ_CP016303.1_525418_525946_+,NA|148aa|up_0|NZ_CP016303.1_525942_526386_+,NA|149aa|down_6|NZ_CP016303.1_537079_537526_+	NA|91aa|up_9|NZ_CP016303.1_517587_517860_+	cd00737, lyz_endolysin_autolysin, endolysin and autolysin	NA|160aa|up_8|NZ_CP016303.1_517945_518425_+	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein	NA|120aa|up_7|NZ_CP016303.1_518486_518846_+	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|413aa|up_6|NZ_CP016303.1_521190_522429_+	pfam04860, Phage_portal, Phage portal protein	NA|286aa|up_5|NZ_CP016303.1_522531_523389_+	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|429aa|up_4|NZ_CP016303.1_523401_524688_+	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|70aa|up_3|NZ_CP016303.1_524738_524948_+	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|128aa|up_2|NZ_CP016303.1_525048_525432_+	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|176aa|up_1|NZ_CP016303.1_525418_525946_+	NA	NA|148aa|up_0|NZ_CP016303.1_525942_526386_+	NA	NA|500aa|down_0|NZ_CP016303.1_526856_528356_+	COG4386, COG4386, Mu-like prophage tail sheath protein gpL [General function prediction only]	NA|119aa|down_1|NZ_CP016303.1_528355_528712_+	pfam10618, Tail_tube, Phage tail tube protein	NA|118aa|down_2|NZ_CP016303.1_528708_529062_+	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|623aa|down_3|NZ_CP016303.1_529116_530985_+	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|136aa|down_4|NZ_CP016303.1_533971_534379_+	pfam07409, GP46, Phage protein GP46	NA|208aa|down_5|NZ_CP016303.1_536282_536906_+	pfam07484, Collar, Phage Tail Collar Domain	NA|149aa|down_6|NZ_CP016303.1_537079_537526_+	NA	NA|51aa|down_7|NZ_CP016303.1_537506_537659_-	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|402aa|down_8|NZ_CP016303.1_537658_538864_-	PRK10458, PRK10458, DNA cytosine methylase; Provisional	NA|196aa|down_9|NZ_CP016303.1_539325_539913_+	PRK00150, def, peptide deformylase; Reviewed
GCF_002285855.1_ASM228585v1	NZ_CP016303	Candidatus Hamiltonella defensa (Bemisia tabaci) strain MEAM1, complete genome	3	1065517-1065625	2	CRISPRCasFinder	no	cas3,DEDDh	cas3,DEDDh	Unclear	GACACCAAGGCTACAGAAACCGCCAGTGCCACCAAGAACA	40	1	2	1065557-1065585|1065557-1065585	NZ_CP016303.1_388724-388752|NZ_CP016303.1_394412-394440	NA	1	1	Unclear	cas3,DEDDh	NA,NA	cas3|451aa|up_9|NZ_CP016303.1_1054047_1055400_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|237aa|up_8|NZ_CP016303.1_1055702_1056413_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|334aa|up_7|NZ_CP016303.1_1056635_1057637_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|355aa|up_6|NZ_CP016303.1_1057713_1058778_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|313aa|up_5|NZ_CP016303.1_1059041_1059980_+	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|106aa|up_4|NZ_CP016303.1_1060083_1060401_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|73aa|up_3|NZ_CP016303.1_1062800_1063019_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|145aa|up_2|NZ_CP016303.1_1063330_1063765_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|100aa|up_1|NZ_CP016303.1_1063906_1064206_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|133aa|up_0|NZ_CP016303.1_1064167_1064566_-	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA|150aa|down_0|NZ_CP016303.1_1067307_1067757_-	PRK15118, PRK15118, universal stress protein UspA	NA|272aa|down_1|NZ_CP016303.1_1067840_1068656_-	PRK00865, PRK00865, glutamate racemase; Provisional	DEDDh|186aa|down_2|NZ_CP016303.1_1068997_1069555_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|354aa|down_3|NZ_CP016303.1_1069664_1070726_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|289aa|down_4|NZ_CP016303.1_1070741_1071608_+	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|1111aa|down_5|NZ_CP016303.1_1071898_1075231_+	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional	NA|326aa|down_6|NZ_CP016303.1_1075288_1076266_-	PRK09350, PRK09350, elongation factor P--(R)-beta-lysine ligase	NA|334aa|down_7|NZ_CP016303.1_1076454_1077456_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|240aa|down_8|NZ_CP016303.1_1077476_1078196_+	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|276aa|down_9|NZ_CP016303.1_1078182_1079010_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed
GCF_002285855.1_ASM228585v1	NZ_CP016303	Candidatus Hamiltonella defensa (Bemisia tabaci) strain MEAM1, complete genome	4	1656197-1656294	3	CRISPRCasFinder	no	DEDDh	cas3,DEDDh	Unclear	GGCCACTTTACCCCCTTTTATTGGGTTTG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|451aa|up_9|NZ_CP016303.1_1644956_1646309_-,NA|319aa|up_7|NZ_CP016303.1_1648080_1649037_-,NA|108aa|down_6|NZ_CP016303.1_1664870_1665194_-	NA|451aa|up_9|NZ_CP016303.1_1644956_1646309_-	NA	NA|578aa|up_8|NZ_CP016303.1_1646260_1647994_-	pfam06511, IpaD, Invasion plasmid antigen IpaD	NA|319aa|up_7|NZ_CP016303.1_1648080_1649037_-	NA	NA|537aa|up_6|NZ_CP016303.1_1649403_1651014_-	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB	NA|173aa|up_5|NZ_CP016303.1_1651015_1651534_-	PRK15331, PRK15331, type III secretion system translocator chaperone SicA	NA|350aa|up_4|NZ_CP016303.1_1651638_1652688_-	PRK08156, PRK08156, EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA|255aa|up_3|NZ_CP016303.1_1652862_1653627_-	PRK15332, PRK15332, SpaR/YscT/HrcT type III secretion system export apparatus protein	NA|87aa|up_2|NZ_CP016303.1_1653629_1653890_-	PRK15333, PRK15333, EscS/YscS/HrcS family type III secretion system export apparatus protein	NA|222aa|up_1|NZ_CP016303.1_1653906_1654572_-	PRK12796, spaP, EscR/YscR/HrcR family type III secretion system export apparatus protein	NA|343aa|up_0|NZ_CP016303.1_1654583_1655612_-	PRK08158, PRK08158, YscQ/HrcQ family type III secretion apparatus protein	NA|152aa|down_0|NZ_CP016303.1_1656750_1657206_-	pfam02090, SPAM, Salmonella surface presentation of antigen gene type M protein	NA|432aa|down_1|NZ_CP016303.1_1657189_1658485_-	PRK08149, PRK08149, FliI/YscN family ATPase	NA|142aa|down_2|NZ_CP016303.1_1658484_1658910_-	cd17035, T3SC_IB_Spa15-like, Class IB type III secretion system chaperone protein, similar to Shigella flexneri Spa15	NA|685aa|down_3|NZ_CP016303.1_1658932_1660987_-	PRK15337, PRK15337, EscV/YscV/HrcV family type III secretion system export apparatus protein	NA|403aa|down_4|NZ_CP016303.1_1661004_1662213_-	PRK15338, PRK15338, YopN/LcrE/InvE/MxiC type III secretion system gatekeeper	NA|257aa|down_5|NZ_CP016303.1_1663889_1664660_-	PRK15340, PRK15340, AraC family transcriptional regulator InvF	NA|108aa|down_6|NZ_CP016303.1_1664870_1665194_-	NA	NA|279aa|down_7|NZ_CP016303.1_1665747_1666584_+	PRK12370, PRK12370, HilA/EilA family virulence transcriptional regulator	DEDDh|222aa|down_8|NZ_CP016303.1_1666791_1667457_+	PRK05168, PRK05168, ribonuclease T; Provisional	NA|118aa|down_9|NZ_CP016303.1_1667462_1667816_-	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin
