assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	1	1160538-1161115	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|434aa|up_9|NZ_CP023142.1_1147990_1149292_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP023142.1_1149339_1151574_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_7|NZ_CP023142.1_1151669_1152461_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP023142.1_1152688_1154326_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP023142.1_1154412_1155711_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP023142.1_1155770_1156685_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP023142.1_1156681_1157830_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|NZ_CP023142.1_1157844_1158738_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP023142.1_1158751_1159354_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP023142.1_1159526_1160198_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP023142.1_1161753_1163232_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP023142.1_1163258_1164536_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP023142.1_1164854_1165640_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP023142.1_1165709_1167164_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP023142.1_1167257_1168595_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP023142.1_1168572_1169352_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP023142.1_1169348_1170209_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP023142.1_1170355_1170931_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP023142.1_1170947_1171208_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP023142.1_1171198_1172470_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	2	1190018-1190961	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,15,15	15	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|371aa|up_9|NZ_CP023142.1_1178041_1179154_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|up_8|NZ_CP023142.1_1179663_1179816_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_7|NZ_CP023142.1_1179892_1181005_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_6|NZ_CP023142.1_1181359_1184059_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_CP023142.1_1184156_1185719_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_CP023142.1_1185715_1186252_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_3|NZ_CP023142.1_1186266_1187322_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP023142.1_1187332_1188079_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP023142.1_1188060_1188711_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP023142.1_1189627_1189921_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP023142.1_1191042_1192080_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP023142.1_1192331_1193240_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP023142.1_1193241_1194669_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP023142.1_1194668_1195274_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP023142.1_1195323_1195647_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP023142.1_1195840_1196152_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP023142.1_1196170_1196881_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP023142.1_1196880_1197360_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP023142.1_1197356_1198406_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP023142.1_1198386_1199148_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	3	2367488-2367611	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA|30aa|down_7|NZ_CP023142.1_2376508_2376598_+	NA|79aa|up_9|NZ_CP023142.1_2356395_2356632_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP023142.1_2356942_2358355_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP023142.1_2358911_2359121_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP023142.1_2359576_2360203_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP023142.1_2360223_2362326_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_4|NZ_CP023142.1_2362329_2362977_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|262aa|up_3|NZ_CP023142.1_2363704_2364490_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP023142.1_2364493_2365306_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP023142.1_2365317_2366922_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP023142.1_2367047_2367353_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP023142.1_2367926_2369183_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP023142.1_2369223_2370597_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP023142.1_2370811_2371453_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP023142.1_2371492_2372641_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP023142.1_2372931_2374143_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP023142.1_2374255_2375188_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP023142.1_2375184_2376210_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP023142.1_2376508_2376598_+	NA	NA|390aa|down_8|NZ_CP023142.1_2376763_2377933_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP023142.1_2378078_2378660_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	4	3111509-3111600	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA|70aa|up_9|NZ_CP023142.1_3100760_3100970_-,NA	NA|70aa|up_9|NZ_CP023142.1_3100760_3100970_-	NA	NA|1321aa|up_8|NZ_CP023142.1_3101024_3104987_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP023142.1_3105026_3105665_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP023142.1_3105952_3107044_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP023142.1_3107043_3107736_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP023142.1_3107747_3108134_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP023142.1_3108141_3108954_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP023142.1_3108950_3109541_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP023142.1_3109551_3110046_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|441aa|up_0|NZ_CP023142.1_3110066_3111389_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP023142.1_3112023_3112620_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP023142.1_3112640_3112868_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP023142.1_3112905_3114147_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP023142.1_3114439_3115696_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP023142.1_3115955_3116876_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP023142.1_3116875_3117181_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP023142.1_3117273_3117873_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP023142.1_3117869_3120416_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP023142.1_3120415_3121588_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP023142.1_3121717_3122410_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	5	3271809-3272016	5,3	CRISPRCasFinder,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGCCTGTACGGCAGTGAAC	28,29	0	0	NA	NA	I-F:I-F	3,2	3	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|431aa|up_9|NZ_CP023142.1_3256454_3257747_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP023142.1_3257837_3259181_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP023142.1_3259191_3259803_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP023142.1_3259961_3264068_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP023142.1_3264202_3264697_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP023142.1_3265242_3266208_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP023142.1_3266330_3268097_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP023142.1_3268097_3269819_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP023142.1_3269860_3270565_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP023142.1_3270849_3271068_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP023142.1_3272228_3274505_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP023142.1_3274535_3274856_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP023142.1_3275178_3275403_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP023142.1_3275474_3277421_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP023142.1_3277417_3278533_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP023142.1_3278683_3279640_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP023142.1_3279636_3281295_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP023142.1_3281720_3282416_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP023142.1_3282899_3283799_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP023142.1_3283942_3285595_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	6	3702514-3702626	4	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Orphan	TTTTCTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA|34aa|up_5|NZ_CP023142.1_3696934_3697036_-,NA|170aa|up_4|NZ_CP023142.1_3697132_3697642_-,NA|101aa|up_1|NZ_CP023142.1_3701049_3701352_-,NA|158aa|down_3|NZ_CP023142.1_3704777_3705251_+,NA|311aa|down_4|NZ_CP023142.1_3705247_3706180_+	NA|121aa|up_9|NZ_CP023142.1_3695670_3696033_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_8|NZ_CP023142.1_3696029_3696320_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_7|NZ_CP023142.1_3696312_3696483_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_6|NZ_CP023142.1_3696482_3696938_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_5|NZ_CP023142.1_3696934_3697036_-	NA	NA|170aa|up_4|NZ_CP023142.1_3697132_3697642_-	NA	NA|203aa|up_3|NZ_CP023142.1_3697877_3698486_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|501aa|up_2|NZ_CP023142.1_3699298_3700801_+	smart00974, T5orf172, This entry represents the putative helicase A859L	NA|101aa|up_1|NZ_CP023142.1_3701049_3701352_-	NA	NA|234aa|up_0|NZ_CP023142.1_3701348_3702050_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP023142.1_3703062_3703602_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP023142.1_3703671_3703902_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP023142.1_3704006_3704696_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|158aa|down_3|NZ_CP023142.1_3704777_3705251_+	NA	NA|311aa|down_4|NZ_CP023142.1_3705247_3706180_+	NA	NA|97aa|down_5|NZ_CP023142.1_3706578_3706869_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP023142.1_3706944_3707241_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_7|NZ_CP023142.1_3707246_3708032_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_8|NZ_CP023142.1_3708028_3708709_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_9|NZ_CP023142.1_3708705_3708888_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	7	4072432-4072573	6	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Unclear	GTTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCA	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|549aa|up_9|NZ_CP023142.1_4062743_4064390_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|up_8|NZ_CP023142.1_4064394_4064736_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|327aa|up_7|NZ_CP023142.1_4064750_4065731_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|284aa|up_6|NZ_CP023142.1_4066118_4066970_+	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|124aa|up_5|NZ_CP023142.1_4066962_4067334_+	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|251aa|up_4|NZ_CP023142.1_4067330_4068083_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|91aa|up_3|NZ_CP023142.1_4068085_4068358_+	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|261aa|up_2|NZ_CP023142.1_4068359_4069142_+	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|up_1|NZ_CP023142.1_4069131_4070271_+	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|698aa|up_0|NZ_CP023142.1_4070254_4072348_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|405aa|down_0|NZ_CP023142.1_4072675_4073889_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|166aa|down_1|NZ_CP023142.1_4074047_4074545_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|down_2|NZ_CP023142.1_4074721_4075471_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_3|NZ_CP023142.1_4075771_4076512_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_4|NZ_CP023142.1_4076482_4077250_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_5|NZ_CP023142.1_4077455_4078034_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_6|NZ_CP023142.1_4078273_4080718_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_7|NZ_CP023142.1_4080760_4081234_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_8|NZ_CP023142.1_4081387_4082158_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|163aa|down_9|NZ_CP023142.1_4082429_4082918_-	TIGR03765, conserved_hypothetical_protein, integrating conjugative element protein, PFL_4695 family
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	8	4437652-4437816	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Orphan	CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCAAACCTGCACGTTAG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA|121aa|up_7|NZ_CP023142.1_4429814_4430177_+,NA	NA|275aa|up_9|NZ_CP023142.1_4428335_4429160_+	COG5532, COG5532, Uncharacterized conserved protein [Function unknown]	NA|179aa|up_8|NZ_CP023142.1_4429287_4429824_+	COG1896, COG1896, Predicted hydrolases of HD superfamily [General function prediction only]	NA|121aa|up_7|NZ_CP023142.1_4429814_4430177_+	NA	NA|207aa|up_6|NZ_CP023142.1_4430176_4430797_+	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|532aa|up_5|NZ_CP023142.1_4431531_4433127_+	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain	NA|413aa|up_4|NZ_CP023142.1_4433279_4434518_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|226aa|up_3|NZ_CP023142.1_4434903_4435581_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|up_2|NZ_CP023142.1_4435595_4436042_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|up_1|NZ_CP023142.1_4436010_4436424_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|up_0|NZ_CP023142.1_4436526_4437558_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_0|NZ_CP023142.1_4438296_4438533_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|263aa|down_1|NZ_CP023142.1_4438673_4439462_+	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional	NA|226aa|down_2|NZ_CP023142.1_4439499_4440177_-	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional	NA|242aa|down_3|NZ_CP023142.1_4440134_4440860_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|257aa|down_4|NZ_CP023142.1_4441478_4442249_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|158aa|down_5|NZ_CP023142.1_4442239_4442713_+	PRK09917, PRK09917, threonine/serine exporter	NA|180aa|down_6|NZ_CP023142.1_4442819_4443359_+	PRK02854, PRK02854, primosomal protein DnaT	NA|246aa|down_7|NZ_CP023142.1_4443361_4444099_+	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|165aa|down_8|NZ_CP023142.1_4444147_4444642_+	PRK11667, PRK11667, hypothetical protein; Provisional	NA|764aa|down_9|NZ_CP023142.1_4444895_4447187_+	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
GCF_002278115.2_ASM227811v2	NZ_CP023142	Escherichia coli strain CFSAN061770 chromosome, complete genome	9	4609639-4609776	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	Orphan	GAACTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA|77aa|down_6|NZ_CP023142.1_4616803_4617034_-,NA|118aa|down_7|NZ_CP023142.1_4617020_4617374_-,NA|325aa|down_8|NZ_CP023142.1_4617389_4618364_-	NA|340aa|up_9|NZ_CP023142.1_4597803_4598823_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP023142.1_4598826_4599390_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP023142.1_4599606_4600638_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP023142.1_4600661_4601426_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP023142.1_4601487_4602807_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP023142.1_4602873_4603872_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP023142.1_4603949_4605452_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP023142.1_4605612_4606695_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP023142.1_4606694_4607795_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP023142.1_4608061_4609573_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP023142.1_4609828_4610272_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP023142.1_4610271_4613127_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP023142.1_4613182_4614379_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP023142.1_4614571_4615075_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP023142.1_4615120_4615537_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP023142.1_4615698_4616703_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|77aa|down_6|NZ_CP023142.1_4616803_4617034_-	NA	NA|118aa|down_7|NZ_CP023142.1_4617020_4617374_-	NA	NA|325aa|down_8|NZ_CP023142.1_4617389_4618364_-	NA	NA|151aa|down_9|NZ_CP023142.1_4618485_4618938_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
