assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002271215.1_ASM227121v1	NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	1	285691-285833	1	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,DinG	Orphan	CGCTTACCGGGCCTACAAAACCCGAACGTAGGCCGGGTAAGGCG	44	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,DinG	NA,NA|84aa|down_7|NZ_CP018628.1_295117_295369_-	NA|70aa|up_9|NZ_CP018628.1_276106_276316_+	PRK10428, PRK10428, hypothetical protein; Provisional	NA|172aa|up_8|NZ_CP018628.1_276382_276898_-	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur	NA|163aa|up_7|NZ_CP018628.1_277013_277502_+	cd02224, cupin_SPO2919-like, Silicibacter pomeroyi SPO2919 and related proteins, uncharacterized sugar phosphate isomerase with a cupin domain	NA|437aa|up_6|NZ_CP018628.1_277672_278983_+	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein	NA|332aa|up_5|NZ_CP018628.1_279064_280060_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|81aa|up_4|NZ_CP018628.1_280198_280441_+	PRK09459, pspG, envelope stress response protein PspG	NA|328aa|up_3|NZ_CP018628.1_280621_281605_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|471aa|up_2|NZ_CP018628.1_281679_283092_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|360aa|up_1|NZ_CP018628.1_283245_284325_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|398aa|up_0|NZ_CP018628.1_284445_285639_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|238aa|down_0|NZ_CP018628.1_286003_286717_+	PRK11009, aphA, class B acid phosphatase	NA|118aa|down_1|NZ_CP018628.1_286834_287188_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|943aa|down_2|NZ_CP018628.1_287184_290013_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|176aa|down_3|NZ_CP018628.1_290259_290787_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|478aa|down_4|NZ_CP018628.1_290904_292338_-	cd01948, EAL, EAL domain	NA|254aa|down_5|NZ_CP018628.1_292482_293244_-	cd01948, EAL, EAL domain	NA|502aa|down_6|NZ_CP018628.1_293322_294828_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|84aa|down_7|NZ_CP018628.1_295117_295369_-	NA	NA|331aa|down_8|NZ_CP018628.1_295538_296531_+	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|699aa|down_9|NZ_CP018628.1_296869_298966_-	PRK06012, flhA, flagellar type III secretion system protein FlhA
GCF_002271215.1_ASM227121v1	NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	2	460286-460367	2	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,DinG	Orphan	GCGCTTATCCGGCCTACGAAGGC	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,DinG	NA,NA|186aa|down_5|NZ_CP018628.1_465959_466517_-,NA|120aa|down_6|NZ_CP018628.1_466737_467097_+	NA|229aa|up_9|NZ_CP018628.1_453100_453787_+	PRK12348, sgaE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|92aa|up_8|NZ_CP018628.1_453866_454142_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|132aa|up_7|NZ_CP018628.1_454485_454881_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|105aa|up_6|NZ_CP018628.1_454887_455202_+	PRK02801, PRK02801, primosomal replication protein N; Provisional	NA|76aa|up_5|NZ_CP018628.1_455206_455434_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|150aa|up_4|NZ_CP018628.1_455475_455925_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|312aa|up_3|NZ_CP018628.1_456078_457014_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|215aa|up_2|NZ_CP018628.1_457049_457694_-	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]	NA|220aa|up_1|NZ_CP018628.1_457888_458548_+	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional	NA|470aa|up_0|NZ_CP018628.1_458855_460265_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|221aa|down_0|NZ_CP018628.1_460420_461083_-	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE	NA|550aa|down_1|NZ_CP018628.1_461331_462981_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|down_2|NZ_CP018628.1_463076_464039_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|275aa|down_3|NZ_CP018628.1_464114_464939_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|283aa|down_4|NZ_CP018628.1_465020_465869_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|186aa|down_5|NZ_CP018628.1_465959_466517_-	NA	NA|120aa|down_6|NZ_CP018628.1_466737_467097_+	NA	NA|671aa|down_7|NZ_CP018628.1_467145_469158_+	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|195aa|down_8|NZ_CP018628.1_469160_469745_+	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|168aa|down_9|NZ_CP018628.1_469734_470238_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif
GCF_002271215.1_ASM227121v1	NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	3	1416086-1416359	1	PILER-CR	no		RT,cas3,DEDDh,csa3,WYL,DinG	Orphan	GGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	53	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,DEDDh,csa3,WYL,DinG	NA,NA	NA|380aa|up_9|NZ_CP018628.1_1408286_1409426_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|up_8|NZ_CP018628.1_1409440_1409554_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|94aa|up_7|NZ_CP018628.1_1409690_1409972_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|up_6|NZ_CP018628.1_1410121_1410526_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|231aa|up_5|NZ_CP018628.1_1410522_1411215_+	PRK10801, PRK10801, Tol-Pal system protein TolQ	NA|143aa|up_4|NZ_CP018628.1_1411218_1411647_+	PRK11024, PRK11024, colicin uptake protein TolR; Provisional	NA|423aa|up_3|NZ_CP018628.1_1411675_1412944_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|431aa|up_2|NZ_CP018628.1_1413078_1414371_+	PRK03629, tolB, Tol-Pal system protein TolB	NA|174aa|up_1|NZ_CP018628.1_1414406_1414928_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|265aa|up_0|NZ_CP018628.1_1414937_1415732_+	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional	NA|348aa|down_0|NZ_CP018628.1_1416577_1417621_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|240aa|down_1|NZ_CP018628.1_1417658_1418378_+	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional	NA|313aa|down_2|NZ_CP018628.1_1418374_1419313_-	PRK03557, PRK03557, CDF family zinc transporter ZitB	NA|123aa|down_3|NZ_CP018628.1_1419420_1419789_-	pfam13985, YbgS, YbgS-like protein	NA|351aa|down_4|NZ_CP018628.1_1420106_1421159_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|251aa|down_5|NZ_CP018628.1_1421221_1421974_-	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|347aa|down_6|NZ_CP018628.1_1422250_1423291_-	PRK11055, galM, galactose-1-epimerase; Provisional	NA|383aa|down_7|NZ_CP018628.1_1423284_1424433_-	PRK05101, PRK05101, galactokinase; Provisional	NA|349aa|down_8|NZ_CP018628.1_1424436_1425483_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|339aa|down_9|NZ_CP018628.1_1425492_1426509_-	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional
GCF_002271215.1_ASM227121v1	NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	4	2348529-2348606	3	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,DinG	Orphan	CGCCTTACCCGGCCTACGGGTTCTGT	26	1	2	2348555-2348580|2348555-2348580	NZ_CP018628.1_611252-611227|NZ_CP018628.1_611304-611279	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,DinG	NA|116aa|up_7|NZ_CP018628.1_2343511_2343859_-,NA|126aa|up_6|NZ_CP018628.1_2343855_2344233_-,NA	NA|354aa|up_9|NZ_CP018628.1_2340041_2341103_-	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|705aa|up_8|NZ_CP018628.1_2341335_2343450_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|116aa|up_7|NZ_CP018628.1_2343511_2343859_-	NA	NA|126aa|up_6|NZ_CP018628.1_2343855_2344233_-	NA	NA|223aa|up_5|NZ_CP018628.1_2344534_2345203_-	PRK11414, PRK11414, GntR family transcriptional regulator	NA|346aa|up_4|NZ_CP018628.1_2345460_2346498_-	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]	NA|192aa|up_3|NZ_CP018628.1_2346564_2347140_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|172aa|up_2|NZ_CP018628.1_2347287_2347803_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|150aa|up_1|NZ_CP018628.1_2347802_2348252_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|78aa|up_0|NZ_CP018628.1_2348255_2348489_-	pfam10735, DUF2526, Protein of unknown function (DUF2526)	NA|537aa|down_0|NZ_CP018628.1_2348682_2350293_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|449aa|down_1|NZ_CP018628.1_2350575_2351922_+	PRK10811, rne, ribonuclease E; Reviewed	NA|994aa|down_2|NZ_CP018628.1_2351926_2354908_+	COG4457, SrfB, Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]	NA|725aa|down_3|NZ_CP018628.1_2354904_2357079_+	COG4458, SrfC, Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]	NA|58aa|down_4|NZ_CP018628.1_2357818_2357992_-	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|109aa|down_5|NZ_CP018628.1_2358242_2358569_+	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]	NA|118aa|down_6|NZ_CP018628.1_2358597_2358951_+	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]	NA|61aa|down_7|NZ_CP018628.1_2358955_2359138_+	pfam08956, DUF1869, Domain of unknown function (DUF1869)	NA|223aa|down_8|NZ_CP018628.1_2359620_2360289_+	PRK09951, PRK09951, hypothetical protein; Provisional	NA|106aa|down_9|NZ_CP018628.1_2360289_2360607_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit
GCF_002271215.1_ASM227121v1	NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	5	2557833-2558017	4	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,DinG	Orphan	TCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGCTGGCGGCT	45	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,DinG	NA|120aa|up_6|NZ_CP018628.1_2550384_2550744_-,NA	NA|160aa|up_9|NZ_CP018628.1_2548054_2548534_-	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit	NA|438aa|up_8|NZ_CP018628.1_2548533_2549847_-	cd08879, RHO_alpha_C_AntDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases	NA|179aa|up_7|NZ_CP018628.1_2549843_2550380_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|120aa|up_6|NZ_CP018628.1_2550384_2550744_-	NA	NA|376aa|up_5|NZ_CP018628.1_2550767_2551895_-	cd01159, NcnH, Naphthocyclinone hydroxylase	NA|375aa|up_4|NZ_CP018628.1_2551993_2553118_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|158aa|up_3|NZ_CP018628.1_2553451_2553925_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|463aa|up_2|NZ_CP018628.1_2554294_2555683_+	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease	NA|327aa|up_1|NZ_CP018628.1_2555714_2556695_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|337aa|up_0|NZ_CP018628.1_2556774_2557785_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|396aa|down_0|NZ_CP018628.1_2558081_2559269_-	PRK10213, nepI, purine ribonucleoside efflux pump NepI	NA|319aa|down_1|NZ_CP018628.1_2559385_2560342_+	pfam12852, Cupin_6, Cupin	NA|461aa|down_2|NZ_CP018628.1_2560352_2561735_-	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|560aa|down_3|NZ_CP018628.1_2562109_2563789_+	PRK13271, treA, alpha,alpha-trehalase TreA	NA|701aa|down_4|NZ_CP018628.1_2563932_2566035_-	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|85aa|down_5|NZ_CP018628.1_2566147_2566402_-	PRK10457, PRK10457, hypothetical protein; Provisional	NA|244aa|down_6|NZ_CP018628.1_2566610_2567342_+	COG5581, COG5581, c-di-GMP-binding protein [Signal transduction mechanisms]	NA|204aa|down_7|NZ_CP018628.1_2567379_2567991_-	PRK15470, emtA, membrane-bound lytic murein transglycosylase EmtA	NA|305aa|down_8|NZ_CP018628.1_2568091_2569006_+	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional	NA|578aa|down_9|NZ_CP018628.1_2569103_2570837_+	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
GCF_002271215.1_ASM227121v1	NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	6	3144481-3144617	5	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,DinG	Orphan	CGTTTTGCTTTTACCTTGTGCGGTTGGATGCTCTCACCCCGGC	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,DinG	NA,NA	NA|423aa|up_9|NZ_CP018628.1_3132328_3133597_-	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|302aa|up_8|NZ_CP018628.1_3133667_3134573_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|220aa|up_7|NZ_CP018628.1_3134727_3135387_-	PRK10847, PRK10847, DedA family protein	NA|271aa|up_6|NZ_CP018628.1_3135415_3136228_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|337aa|up_5|NZ_CP018628.1_3136230_3137241_-	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|379aa|up_4|NZ_CP018628.1_3137308_3138445_-	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|335aa|up_3|NZ_CP018628.1_3138562_3139567_+	PRK10715, flk, flagella biosynthesis regulator Flk	NA|393aa|up_2|NZ_CP018628.1_3139643_3140822_-	PRK12382, PRK12382, putative transporter; Provisional	NA|406aa|up_1|NZ_CP018628.1_3141027_3142245_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|691aa|up_0|NZ_CP018628.1_3142342_3144415_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|93aa|down_0|NZ_CP018628.1_3144707_3144986_-	pfam08891, YfcL, YfcL protein	NA|183aa|down_1|NZ_CP018628.1_3144995_3145544_-	COG3101, COG3101, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP018628.1_3145543_3146353_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|275aa|down_3|NZ_CP018628.1_3146352_3147177_-	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed	NA|362aa|down_4|NZ_CP018628.1_3147179_3148265_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|311aa|down_5|NZ_CP018628.1_3148326_3149259_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|184aa|down_6|NZ_CP018628.1_3149416_3149968_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|down_7|NZ_CP018628.1_3150013_3150499_-	PRK10848, PRK10848, phosphohistidine phosphatase SixA	NA|716aa|down_8|NZ_CP018628.1_3150709_3152857_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|437aa|down_9|NZ_CP018628.1_3152856_3154167_-	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed
