assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002257625.1_ASM225762v1	NZ_CP017716	Lacticaseibacillus paracasei strain TK1501 chromosome, complete genome	1	274041-274185	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Orphan	GGGGTCCTTATGAGCAGGTTTCTGCGCCTGTTTGCGCGTTTCGAAA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|115aa|up_7|NZ_CP017716.1_265266_265611_+,NA|111aa|down_4|NZ_CP017716.1_277912_278245_+	NA|523aa|up_9|NZ_CP017716.1_261914_263483_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|451aa|up_8|NZ_CP017716.1_263667_265020_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|115aa|up_7|NZ_CP017716.1_265266_265611_+	NA	NA|240aa|up_6|NZ_CP017716.1_265684_266404_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|266aa|up_5|NZ_CP017716.1_266400_267198_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|284aa|up_4|NZ_CP017716.1_267265_268117_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|294aa|up_3|NZ_CP017716.1_268113_268995_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|600aa|up_2|NZ_CP017716.1_268991_270791_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|365aa|up_1|NZ_CP017716.1_270919_272014_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|460aa|up_0|NZ_CP017716.1_272164_273544_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|229aa|down_0|NZ_CP017716.1_274285_274972_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|253aa|down_1|NZ_CP017716.1_275416_276175_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|261aa|down_2|NZ_CP017716.1_276259_277042_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|248aa|down_3|NZ_CP017716.1_277060_277804_+	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|111aa|down_4|NZ_CP017716.1_277912_278245_+	NA	NA|200aa|down_5|NZ_CP017716.1_278535_279135_-	TIGR02227, Inactive_signal_peptidase_IA	NA|313aa|down_6|NZ_CP017716.1_279212_280151_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|516aa|down_7|NZ_CP017716.1_280530_282078_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|down_8|NZ_CP017716.1_282237_282978_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|105aa|down_9|NZ_CP017716.1_288344_288659_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_002257625.1_ASM225762v1	NZ_CP017716	Lacticaseibacillus paracasei strain TK1501 chromosome, complete genome	2	664129-664261	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Orphan	CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTCGT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|48aa|up_0|NZ_CP017716.1_663824_663968_+,NA|78aa|down_1|NZ_CP017716.1_665185_665419_-,NA|60aa|down_5|NZ_CP017716.1_668515_668695_+,NA|175aa|down_6|NZ_CP017716.1_668772_669297_+,NA|354aa|down_9|NZ_CP017716.1_671229_672291_-	NA|227aa|up_9|NZ_CP017716.1_653780_654461_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP017716.1_654482_655421_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP017716.1_655535_656537_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP017716.1_656575_657094_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP017716.1_657138_657567_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP017716.1_657571_658348_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP017716.1_658792_659419_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP017716.1_659479_660601_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP017716.1_660600_663726_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP017716.1_663824_663968_+	NA	NA|159aa|down_0|NZ_CP017716.1_664715_665192_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_CP017716.1_665185_665419_-	NA	NA|368aa|down_2|NZ_CP017716.1_665748_666852_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP017716.1_667062_667848_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_CP017716.1_667850_668519_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_CP017716.1_668515_668695_+	NA	NA|175aa|down_6|NZ_CP017716.1_668772_669297_+	NA	NA|211aa|down_7|NZ_CP017716.1_669530_670163_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_CP017716.1_670234_671056_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_CP017716.1_671229_672291_-	NA
GCF_002257625.1_ASM225762v1	NZ_CP017716	Lacticaseibacillus paracasei strain TK1501 chromosome, complete genome	3	1798581-1798701	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Orphan	CGGTTTCTAAACGCGTTCGCCACCCCAGAAACC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|100aa|up_5|NZ_CP017716.1_1793704_1794004_+,NA|146aa|down_5|NZ_CP017716.1_1803259_1803697_-	NA|402aa|up_9|NZ_CP017716.1_1787952_1789158_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|389aa|up_8|NZ_CP017716.1_1789736_1790903_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|427aa|up_7|NZ_CP017716.1_1790886_1792167_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|394aa|up_6|NZ_CP017716.1_1792178_1793360_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|100aa|up_5|NZ_CP017716.1_1793704_1794004_+	NA	NA|277aa|up_4|NZ_CP017716.1_1794004_1794835_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|188aa|up_3|NZ_CP017716.1_1794982_1795546_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|273aa|up_2|NZ_CP017716.1_1795658_1796477_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|380aa|up_1|NZ_CP017716.1_1796536_1797676_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|202aa|up_0|NZ_CP017716.1_1797754_1798360_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|down_0|NZ_CP017716.1_1799086_1799551_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|down_1|NZ_CP017716.1_1799543_1799996_-	PRK04351, PRK04351, SprT family protein	NA|251aa|down_2|NZ_CP017716.1_1800137_1800890_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|down_3|NZ_CP017716.1_1800882_1801782_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|down_4|NZ_CP017716.1_1801778_1802774_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|down_5|NZ_CP017716.1_1803259_1803697_-	NA	NA|887aa|down_6|NZ_CP017716.1_1803833_1806494_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|down_7|NZ_CP017716.1_1806801_1807959_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_8|NZ_CP017716.1_1808178_1809006_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|down_9|NZ_CP017716.1_1809008_1810202_-	pfam00144, Beta-lactamase, Beta-lactamase
GCF_002257625.1_ASM225762v1	NZ_CP017716	Lacticaseibacillus paracasei strain TK1501 chromosome, complete genome	4	2150702-2152321	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	24,24,23	24	TypeII-A,TypeII-C,TypeII-B	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|367aa|up_0|NZ_CP017716.1_2148994_2150095_-,NA|389aa|down_5|NZ_CP017716.1_2160997_2162164_-,NA|108aa|down_7|NZ_CP017716.1_2162955_2163279_+	NA|444aa|up_9|NZ_CP017716.1_2136182_2137514_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|473aa|up_8|NZ_CP017716.1_2137719_2139138_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_7|NZ_CP017716.1_2139304_2139871_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP017716.1_2139997_2141446_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP017716.1_2141617_2143456_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP017716.1_2143907_2144765_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP017716.1_2144902_2146534_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP017716.1_2146530_2148222_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP017716.1_2148418_2148844_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP017716.1_2148994_2150095_-	NA	csn2|226aa|down_0|NZ_CP017716.1_2152345_2153023_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP017716.1_2153019_2153325_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP017716.1_2153302_2154208_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1363aa|down_3|NZ_CP017716.1_2154398_2158487_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|469aa|down_4|NZ_CP017716.1_2158919_2160326_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|389aa|down_5|NZ_CP017716.1_2160997_2162164_-	NA	NA|125aa|down_6|NZ_CP017716.1_2162387_2162762_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_7|NZ_CP017716.1_2162955_2163279_+	NA	NA|576aa|down_8|NZ_CP017716.1_2163350_2165078_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NZ_CP017716.1_2165058_2166801_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
