assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002251875.2_ASM225187v3	NZ_CP041093	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed1, complete sequence	1	31133-31954	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	DinG,RT	DinG,RT,c2c9_V-U4	Unclear	GTATTCCCCCCGTGTGCGGGGGTTATCGG,GTATTCCCCCCGNNTGCGGGGGTTATCGG,GTATTCCCCCCGTGTGCGGGGGTTATCGGT,GTAGTATTCCCCCCGCATGCGGGGGTTATCGG	29,29,30,32	3	3	31162-31193|31833-31864|31833-31861	NZ_CP041095.1_53332-53301|NZ_CP041094.1_139123-139092|NZ_CP041094.1_139123-139095	NA:NA:NA:NA	13,13,5,5	13	Orphan	cas3,csa3,DEDDh,RT,DinG,WYL,c2c9_V-U4	NA|60aa|up_9|NZ_CP041093.1_23640_23820_+,NA|136aa|up_8|NZ_CP041093.1_24144_24552_+,NA|137aa|up_7|NZ_CP041093.1_24581_24992_+,NA|163aa|up_6|NZ_CP041093.1_25043_25532_+,NA|264aa|up_4|NZ_CP041093.1_26092_26884_+,NA|236aa|up_1|NZ_CP041093.1_29323_30031_+,NA|84aa|down_0|NZ_CP041093.1_32402_32654_+,NA|60aa|down_2|NZ_CP041093.1_34053_34233_+,NA|87aa|down_7|NZ_CP041093.1_37037_37298_-	NA|60aa|up_9|NZ_CP041093.1_23640_23820_+	NA	NA|136aa|up_8|NZ_CP041093.1_24144_24552_+	NA	NA|137aa|up_7|NZ_CP041093.1_24581_24992_+	NA	NA|163aa|up_6|NZ_CP041093.1_25043_25532_+	NA	NA|138aa|up_5|NZ_CP041093.1_25616_26030_+	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|264aa|up_4|NZ_CP041093.1_26092_26884_+	NA	NA|189aa|up_3|NZ_CP041093.1_26886_27453_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	DinG|625aa|up_2|NZ_CP041093.1_27455_29330_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|236aa|up_1|NZ_CP041093.1_29323_30031_+	NA	NA|264aa|up_0|NZ_CP041093.1_30275_31067_+	pfam08317, Spc7, Spc7 kinetochore protein	NA|84aa|down_0|NZ_CP041093.1_32402_32654_+	NA	RT|495aa|down_1|NZ_CP041093.1_32653_34138_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|60aa|down_2|NZ_CP041093.1_34053_34233_+	NA	NA|141aa|down_3|NZ_CP041093.1_34223_34646_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|424aa|down_4|NZ_CP041093.1_34645_35917_+	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|148aa|down_5|NZ_CP041093.1_36017_36461_+	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|157aa|down_6|NZ_CP041093.1_36457_36928_+	pfam08808, RES, RES domain	NA|87aa|down_7|NZ_CP041093.1_37037_37298_-	NA	NA|394aa|down_8|NZ_CP041093.1_37868_39050_-	pfam00665, rve, Integrase core domain	NA|447aa|down_9|NZ_CP041093.1_39197_40538_+	pfam13518, HTH_28, Helix-turn-helix domain
GCF_002251875.2_ASM225187v3	NZ_CP041092	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 chromosome, complete genome	1	783218-783314	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,DinG,WYL	Orphan	CTAACAGGAGGCCAGCCACAGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,DinG,WYL,c2c9_V-U4	NA,NA|120aa|down_2|NZ_CP041092.1_786456_786816_-	NA|199aa|up_9|NZ_CP041092.1_771557_772154_-	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|110aa|up_8|NZ_CP041092.1_772477_772807_-	PRK10972, PRK10972, cell division protein ZapA	NA|193aa|up_7|NZ_CP041092.1_772973_773552_+	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|439aa|up_6|NZ_CP041092.1_773575_774892_+	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|393aa|up_5|NZ_CP041092.1_774888_776067_+	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|401aa|up_4|NZ_CP041092.1_776077_777280_+	PRK08013, PRK08013, oxidoreductase; Provisional	NA|365aa|up_3|NZ_CP041092.1_777702_778797_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|130aa|up_2|NZ_CP041092.1_778821_779211_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|958aa|up_1|NZ_CP041092.1_779417_782291_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|248aa|up_0|NZ_CP041092.1_782353_783097_+	PRK09730, PRK09730, SDR family oxidoreductase	NA|204aa|down_0|NZ_CP041092.1_783784_784396_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|670aa|down_1|NZ_CP041092.1_784397_786407_-	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|120aa|down_2|NZ_CP041092.1_786456_786816_-	NA	NA|478aa|down_3|NZ_CP041092.1_786940_788374_-	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional	NA|243aa|down_4|NZ_CP041092.1_788492_789221_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|104aa|down_5|NZ_CP041092.1_789270_789582_+	PRK04980, PRK04980, hypothetical protein; Provisional	NA|220aa|down_6|NZ_CP041092.1_789745_790405_+	PRK15087, PRK15087, hemolysin; Provisional	NA|328aa|down_7|NZ_CP041092.1_790555_791539_-	PRK09559, PRK09559, putative global regulator; Reviewed	NA|89aa|down_8|NZ_CP041092.1_791784_792051_+	PRK10878, PRK10878, FAD assembly factor SdhE	NA|137aa|down_9|NZ_CP041092.1_792031_792442_+	pfam07254, Cpta_toxin, Membrane-bound toxin component of toxin-antitoxin system
GCF_002251875.2_ASM225187v3	NZ_CP041092	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 chromosome, complete genome	2	3878362-3878451	2	CRISPRCasFinder	no	RT	cas3,csa3,DEDDh,RT,DinG,WYL	Unclear	AGCCTCGTCGAGGTCAGCCTGCAGCTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,DinG,WYL,c2c9_V-U4	NA|114aa|up_9|NZ_CP041092.1_3873343_3873685_-,NA|238aa|up_6|NZ_CP041092.1_3875050_3875764_-,NA|128aa|up_4|NZ_CP041092.1_3876653_3877037_-,NA|123aa|up_3|NZ_CP041092.1_3877033_3877402_-,NA|121aa|up_2|NZ_CP041092.1_3877404_3877767_-,NA|58aa|up_1|NZ_CP041092.1_3877766_3877940_-,NA|127aa|up_0|NZ_CP041092.1_3877939_3878320_-,NA|145aa|down_1|NZ_CP041092.1_3879692_3880127_-,NA|460aa|down_2|NZ_CP041092.1_3880126_3881506_-,NA|212aa|down_8|NZ_CP041092.1_3886103_3886739_-,NA|64aa|down_9|NZ_CP041092.1_3886836_3887028_-	NA|114aa|up_9|NZ_CP041092.1_3873343_3873685_-	NA	NA|127aa|up_8|NZ_CP041092.1_3873788_3874169_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|186aa|up_7|NZ_CP041092.1_3874276_3874834_-	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|238aa|up_6|NZ_CP041092.1_3875050_3875764_-	NA	NA|255aa|up_5|NZ_CP041092.1_3875830_3876595_-	pfam13927, Ig_3, Immunoglobulin domain	NA|128aa|up_4|NZ_CP041092.1_3876653_3877037_-	NA	NA|123aa|up_3|NZ_CP041092.1_3877033_3877402_-	NA	NA|121aa|up_2|NZ_CP041092.1_3877404_3877767_-	NA	NA|58aa|up_1|NZ_CP041092.1_3877766_3877940_-	NA	NA|127aa|up_0|NZ_CP041092.1_3877939_3878320_-	NA	NA|344aa|down_0|NZ_CP041092.1_3878649_3879681_-	pfam04454, Linocin_M18, Encapsulating protein for peroxidase	NA|145aa|down_1|NZ_CP041092.1_3879692_3880127_-	NA	NA|460aa|down_2|NZ_CP041092.1_3880126_3881506_-	NA	NA|115aa|down_3|NZ_CP041092.1_3881558_3881903_+	pfam18602, Rap1a, Rap1a immunity proteins	NA|337aa|down_4|NZ_CP041092.1_3881903_3882914_-	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|490aa|down_5|NZ_CP041092.1_3882840_3884310_-	pfam06381, DUF1073, Protein of unknown function (DUF1073)	NA|433aa|down_6|NZ_CP041092.1_3884322_3885621_-	pfam04466, Terminase_3, Phage terminase large subunit	NA|156aa|down_7|NZ_CP041092.1_3885604_3886072_-	pfam10045, DUF2280, Uncharacterized conserved protein (DUF2280)	NA|212aa|down_8|NZ_CP041092.1_3886103_3886739_-	NA	NA|64aa|down_9|NZ_CP041092.1_3886836_3887028_-	NA
GCF_002251875.2_ASM225187v3	NZ_CP041092	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 chromosome, complete genome	3	4374788-4374882	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,DinG,WYL	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,DinG,WYL,c2c9_V-U4	NA,NA	NA|256aa|up_9|NZ_CP041092.1_4360107_4360875_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|282aa|up_8|NZ_CP041092.1_4361003_4361849_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|570aa|up_7|NZ_CP041092.1_4362186_4363896_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP041092.1_4363906_4365409_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP041092.1_4365546_4366242_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP041092.1_4366417_4368775_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP041092.1_4368962_4371869_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP041092.1_4371881_4372541_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP041092.1_4372615_4373155_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP041092.1_4373334_4374699_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP041092.1_4375023_4376649_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP041092.1_4376638_4377337_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP041092.1_4377369_4378197_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP041092.1_4378440_4380789_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP041092.1_4380843_4382130_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP041092.1_4382135_4383125_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP041092.1_4383121_4383943_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP041092.1_4383945_4384323_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP041092.1_4384327_4385176_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP041092.1_4385599_4386079_-	PRK10769, folA, type 3 dihydrofolate reductase
