assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	1	1077215-1077296	1	CRISPRCasFinder	no	csa3	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Type I-A	ATTATTCAAATATTTATTTGAATG	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA|171aa|up_3|NZ_CP019985.1_1072877_1073390_-,NA	NA|205aa|up_9|NZ_CP019985.1_1066899_1067514_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|469aa|up_8|NZ_CP019985.1_1067514_1068921_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|285aa|up_7|NZ_CP019985.1_1069020_1069875_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|227aa|up_6|NZ_CP019985.1_1069897_1070578_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|330aa|up_5|NZ_CP019985.1_1070635_1071625_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|257aa|up_4|NZ_CP019985.1_1071985_1072756_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|171aa|up_3|NZ_CP019985.1_1072877_1073390_-	NA	NA|172aa|up_2|NZ_CP019985.1_1073391_1073907_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|347aa|up_1|NZ_CP019985.1_1073961_1075002_-	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family	NA|710aa|up_0|NZ_CP019985.1_1075055_1077185_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	csa3|124aa|down_0|NZ_CP019985.1_1077391_1077763_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|257aa|down_1|NZ_CP019985.1_1078083_1078854_+	pfam07827, KNTase_C, KNTase C-terminal domain	NA|127aa|down_2|NZ_CP019985.1_1078929_1079310_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|585aa|down_3|NZ_CP019985.1_1079337_1081092_-	COG2602, COG2602, Beta-lactamase class D [Defense mechanisms]	NA|302aa|down_4|NZ_CP019985.1_1081267_1082173_+	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|319aa|down_5|NZ_CP019985.1_1082477_1083434_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|202aa|down_6|NZ_CP019985.1_1083585_1084191_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|289aa|down_7|NZ_CP019985.1_1084183_1085050_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|down_8|NZ_CP019985.1_1085054_1085426_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|72aa|down_9|NZ_CP019985.1_1085850_1086066_-	pfam02517, Abi, CAAX protease self-immunity
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	2	1862787-1863346	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	7,8,8	8	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA|72aa|up_8|NZ_CP019985.1_1854394_1854610_+,NA|102aa|up_6|NZ_CP019985.1_1856194_1856500_-,NA|77aa|down_1|NZ_CP019985.1_1864929_1865160_+	NA|164aa|up_9|NZ_CP019985.1_1852507_1852999_-	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|72aa|up_8|NZ_CP019985.1_1854394_1854610_+	NA	NA|439aa|up_7|NZ_CP019985.1_1854885_1856202_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|102aa|up_6|NZ_CP019985.1_1856194_1856500_-	NA	NA|423aa|up_5|NZ_CP019985.1_1856558_1857827_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|103aa|up_4|NZ_CP019985.1_1857851_1858160_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|113aa|up_3|NZ_CP019985.1_1858346_1858685_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|362aa|up_2|NZ_CP019985.1_1858687_1859773_+	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|299aa|up_1|NZ_CP019985.1_1859777_1860674_+	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|424aa|up_0|NZ_CP019985.1_1861177_1862449_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|292aa|down_0|NZ_CP019985.1_1863622_1864498_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|77aa|down_1|NZ_CP019985.1_1864929_1865160_+	NA	NA|527aa|down_2|NZ_CP019985.1_1865225_1866806_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|down_3|NZ_CP019985.1_1866876_1867794_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|down_4|NZ_CP019985.1_1867805_1868729_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|333aa|down_5|NZ_CP019985.1_1868772_1869771_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|345aa|down_6|NZ_CP019985.1_1869767_1870802_+	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|404aa|down_7|NZ_CP019985.1_1870852_1872064_+	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|481aa|down_8|NZ_CP019985.1_1872121_1873564_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|397aa|down_9|NZ_CP019985.1_1874876_1876067_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	3	1877195-1878093	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTNTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	12,13,13	13	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA|77aa|up_9|NZ_CP019985.1_1864929_1865160_+,NA|170aa|up_0|NZ_CP019985.1_1876272_1876782_-,NA|170aa|down_0|NZ_CP019985.1_1878251_1878761_+,NA|75aa|down_9|NZ_CP019985.1_1889192_1889417_-	NA|77aa|up_9|NZ_CP019985.1_1864929_1865160_+	NA	NA|527aa|up_8|NZ_CP019985.1_1865225_1866806_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|up_7|NZ_CP019985.1_1866876_1867794_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|up_6|NZ_CP019985.1_1867805_1868729_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|333aa|up_5|NZ_CP019985.1_1868772_1869771_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|345aa|up_4|NZ_CP019985.1_1869767_1870802_+	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|404aa|up_3|NZ_CP019985.1_1870852_1872064_+	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|481aa|up_2|NZ_CP019985.1_1872121_1873564_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|397aa|up_1|NZ_CP019985.1_1874876_1876067_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|170aa|up_0|NZ_CP019985.1_1876272_1876782_-	NA	NA|170aa|down_0|NZ_CP019985.1_1878251_1878761_+	NA	NA|341aa|down_1|NZ_CP019985.1_1879150_1880173_+	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|365aa|down_2|NZ_CP019985.1_1880236_1881331_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|552aa|down_3|NZ_CP019985.1_1881332_1882988_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|557aa|down_4|NZ_CP019985.1_1883241_1884912_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|253aa|down_5|NZ_CP019985.1_1884916_1885675_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|366aa|down_6|NZ_CP019985.1_1885792_1886890_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|241aa|down_7|NZ_CP019985.1_1887264_1887987_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|293aa|down_8|NZ_CP019985.1_1888093_1888972_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|75aa|down_9|NZ_CP019985.1_1889192_1889417_-	NA
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	4	1992210-1992509	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	PD-DExK,cas10,csm3gr7,csm4gr5,cas6	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Type III-B,Type III-A,Type III-C,Type III-D	GTCGCACTCTACGTGAGTGCGTGGATTGAAAT,GTCGCACTCTACGTGAGTGCGTGGATTGAAAT,CGTGAGTGCGTGGATTGAAAT	32,32,21	0	0	NA	NA	I-C:I-C:NA	3,4,4	4	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA|272aa|up_9|NZ_CP019985.1_1978567_1979383_+,NA|66aa|up_7|NZ_CP019985.1_1982515_1982713_-,NA	NA|272aa|up_9|NZ_CP019985.1_1978567_1979383_+	NA	cas6|292aa|up_8|NZ_CP019985.1_1979375_1980251_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|66aa|up_7|NZ_CP019985.1_1982515_1982713_-	NA	NA|599aa|up_6|NZ_CP019985.1_1982944_1984741_+	cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F	NA|239aa|up_5|NZ_CP019985.1_1984797_1985514_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|578aa|up_4|NZ_CP019985.1_1985534_1987268_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|422aa|up_3|NZ_CP019985.1_1987358_1988624_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|310aa|up_2|NZ_CP019985.1_1988643_1989573_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_1|NZ_CP019985.1_1989562_1990396_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|up_0|NZ_CP019985.1_1990422_1991787_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|down_0|NZ_CP019985.1_1994082_1995408_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|528aa|down_1|NZ_CP019985.1_1995434_1997018_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|253aa|down_2|NZ_CP019985.1_1997162_1997921_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|156aa|down_3|NZ_CP019985.1_1998178_1998646_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|246aa|down_4|NZ_CP019985.1_1998720_1999458_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|down_5|NZ_CP019985.1_1999500_2000034_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|375aa|down_6|NZ_CP019985.1_2002271_2003395_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|158aa|down_7|NZ_CP019985.1_2004447_2004921_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|315aa|down_8|NZ_CP019985.1_2005084_2006029_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|down_9|NZ_CP019985.1_2006211_2007000_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	5	1993558-1993911	4,4,5	CRT,PILER-CR,CRISPRCasFinder	no	PD-DExK,cas10,csm3gr7,csm4gr5,cas6	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Type III-B,Type III-A,Type III-C,Type III-D	CGTGAGTGCGTGGATTGAAAT,GTCGCACTCTACGTGAGTGCGTGGATTGAAAT,GTCGCACTCTACGTGAGTGCGTGGATTGAAAT	21,32,32	0	0	NA	NA	NA:I-C:I-C	4,3,4	4	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA|272aa|up_9|NZ_CP019985.1_1978567_1979383_+,NA|66aa|up_7|NZ_CP019985.1_1982515_1982713_-,NA	NA|272aa|up_9|NZ_CP019985.1_1978567_1979383_+	NA	cas6|292aa|up_8|NZ_CP019985.1_1979375_1980251_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|66aa|up_7|NZ_CP019985.1_1982515_1982713_-	NA	NA|599aa|up_6|NZ_CP019985.1_1982944_1984741_+	cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F	NA|239aa|up_5|NZ_CP019985.1_1984797_1985514_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|578aa|up_4|NZ_CP019985.1_1985534_1987268_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|422aa|up_3|NZ_CP019985.1_1987358_1988624_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|310aa|up_2|NZ_CP019985.1_1988643_1989573_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_1|NZ_CP019985.1_1989562_1990396_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|up_0|NZ_CP019985.1_1990422_1991787_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|down_0|NZ_CP019985.1_1994082_1995408_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|528aa|down_1|NZ_CP019985.1_1995434_1997018_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|253aa|down_2|NZ_CP019985.1_1997162_1997921_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|156aa|down_3|NZ_CP019985.1_1998178_1998646_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|246aa|down_4|NZ_CP019985.1_1998720_1999458_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|down_5|NZ_CP019985.1_1999500_2000034_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|375aa|down_6|NZ_CP019985.1_2002271_2003395_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|158aa|down_7|NZ_CP019985.1_2004447_2004921_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|315aa|down_8|NZ_CP019985.1_2005084_2006029_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|down_9|NZ_CP019985.1_2006211_2007000_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	6	2000277-2002155	5,6,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	TGTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	33,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	26,28,28,26	28	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA,NA	NA|422aa|up_9|NZ_CP019985.1_1987358_1988624_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|310aa|up_8|NZ_CP019985.1_1988643_1989573_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_7|NZ_CP019985.1_1989562_1990396_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|up_6|NZ_CP019985.1_1990422_1991787_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|up_5|NZ_CP019985.1_1994082_1995408_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|528aa|up_4|NZ_CP019985.1_1995434_1997018_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|253aa|up_3|NZ_CP019985.1_1997162_1997921_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|156aa|up_2|NZ_CP019985.1_1998178_1998646_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|246aa|up_1|NZ_CP019985.1_1998720_1999458_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|up_0|NZ_CP019985.1_1999500_2000034_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|375aa|down_0|NZ_CP019985.1_2002271_2003395_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|158aa|down_1|NZ_CP019985.1_2004447_2004921_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|315aa|down_2|NZ_CP019985.1_2005084_2006029_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|down_3|NZ_CP019985.1_2006211_2007000_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|down_4|NZ_CP019985.1_2006992_2007472_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|down_5|NZ_CP019985.1_2007474_2007750_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|down_6|NZ_CP019985.1_2007775_2009122_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|down_7|NZ_CP019985.1_2009142_2010201_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|down_8|NZ_CP019985.1_2010201_2011071_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|119aa|down_9|NZ_CP019985.1_2012988_2013345_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	7	2003427-2004258	7,7,6	PILER-CR,CRISPRCasFinder,CRT	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAATNN	32,32,34	0	0	NA	NA	I-C:I-C:I-C	9,12,12	12	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA,NA	NA|310aa|up_9|NZ_CP019985.1_1988643_1989573_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_8|NZ_CP019985.1_1989562_1990396_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|up_7|NZ_CP019985.1_1990422_1991787_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|up_6|NZ_CP019985.1_1994082_1995408_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|528aa|up_5|NZ_CP019985.1_1995434_1997018_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|253aa|up_4|NZ_CP019985.1_1997162_1997921_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|156aa|up_3|NZ_CP019985.1_1998178_1998646_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|246aa|up_2|NZ_CP019985.1_1998720_1999458_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|up_1|NZ_CP019985.1_1999500_2000034_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|375aa|up_0|NZ_CP019985.1_2002271_2003395_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|158aa|down_0|NZ_CP019985.1_2004447_2004921_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|315aa|down_1|NZ_CP019985.1_2005084_2006029_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|down_2|NZ_CP019985.1_2006211_2007000_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|down_3|NZ_CP019985.1_2006992_2007472_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|down_4|NZ_CP019985.1_2007474_2007750_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|down_5|NZ_CP019985.1_2007775_2009122_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|down_6|NZ_CP019985.1_2009142_2010201_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|down_7|NZ_CP019985.1_2010201_2011071_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|119aa|down_8|NZ_CP019985.1_2012988_2013345_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|down_9|NZ_CP019985.1_2013455_2014364_-	PRK13674, PRK13674, GTP cyclohydrolase I FolE2
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	8	2011506-2012788	8,8,7,9	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTGTGTGAGTGCGTGGATTGAAATN,GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT	32,32,33,32	0	0	NA	NA	I-C:I-C:I-C:I-C	18,17,19,17	19	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA,NA|78aa|down_5|NZ_CP019985.1_2017405_2017639_-,NA|79aa|down_6|NZ_CP019985.1_2017745_2017982_+,NA|50aa|down_8|NZ_CP019985.1_2020671_2020821_+	NA|178aa|up_9|NZ_CP019985.1_1999500_2000034_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|375aa|up_8|NZ_CP019985.1_2002271_2003395_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|158aa|up_7|NZ_CP019985.1_2004447_2004921_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|315aa|up_6|NZ_CP019985.1_2005084_2006029_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|up_5|NZ_CP019985.1_2006211_2007000_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|up_4|NZ_CP019985.1_2006992_2007472_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|up_3|NZ_CP019985.1_2007474_2007750_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|up_2|NZ_CP019985.1_2007775_2009122_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|up_1|NZ_CP019985.1_2009142_2010201_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|up_0|NZ_CP019985.1_2010201_2011071_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|119aa|down_0|NZ_CP019985.1_2012988_2013345_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|down_1|NZ_CP019985.1_2013455_2014364_-	PRK13674, PRK13674, GTP cyclohydrolase I FolE2	NA|159aa|down_2|NZ_CP019985.1_2014694_2015171_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|down_3|NZ_CP019985.1_2015181_2015406_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|268aa|down_4|NZ_CP019985.1_2015450_2016254_+	pfam05675, DUF817, Protein of unknown function (DUF817)	NA|78aa|down_5|NZ_CP019985.1_2017405_2017639_-	NA	NA|79aa|down_6|NZ_CP019985.1_2017745_2017982_+	NA	NA|319aa|down_7|NZ_CP019985.1_2018186_2019143_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|50aa|down_8|NZ_CP019985.1_2020671_2020821_+	NA	NA|236aa|down_9|NZ_CP019985.1_2020872_2021580_-	COG2188, PhnF, Transcriptional regulators [Transcription]
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	9	2016612-2017042	9,10,8	PILER-CR,CRISPRCasFinder,CRT	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	5,6,6	6	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA,NA|78aa|down_0|NZ_CP019985.1_2017405_2017639_-,NA|79aa|down_1|NZ_CP019985.1_2017745_2017982_+,NA|50aa|down_3|NZ_CP019985.1_2020671_2020821_+,NA|166aa|down_7|NZ_CP019985.1_2024982_2025480_+	NA|160aa|up_9|NZ_CP019985.1_2006992_2007472_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|up_8|NZ_CP019985.1_2007474_2007750_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|up_7|NZ_CP019985.1_2007775_2009122_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|up_6|NZ_CP019985.1_2009142_2010201_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|up_5|NZ_CP019985.1_2010201_2011071_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|119aa|up_4|NZ_CP019985.1_2012988_2013345_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|up_3|NZ_CP019985.1_2013455_2014364_-	PRK13674, PRK13674, GTP cyclohydrolase I FolE2	NA|159aa|up_2|NZ_CP019985.1_2014694_2015171_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|up_1|NZ_CP019985.1_2015181_2015406_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|268aa|up_0|NZ_CP019985.1_2015450_2016254_+	pfam05675, DUF817, Protein of unknown function (DUF817)	NA|78aa|down_0|NZ_CP019985.1_2017405_2017639_-	NA	NA|79aa|down_1|NZ_CP019985.1_2017745_2017982_+	NA	NA|319aa|down_2|NZ_CP019985.1_2018186_2019143_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|50aa|down_3|NZ_CP019985.1_2020671_2020821_+	NA	NA|236aa|down_4|NZ_CP019985.1_2020872_2021580_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|400aa|down_5|NZ_CP019985.1_2021661_2022861_-	cd03322, RspA, The starvation sensing protein RspA from E	NA|455aa|down_6|NZ_CP019985.1_2023156_2024521_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|166aa|down_7|NZ_CP019985.1_2024982_2025480_+	NA	NA|988aa|down_8|NZ_CP019985.1_2025645_2028609_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|373aa|down_9|NZ_CP019985.1_2028693_2029812_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
GCF_002250115.1_ASM225011v1	NZ_CP019985	Alkalihalobacillus clausii strain DSM 8716 chromosome, complete genome	10	2019471-2020497	10,11,9	PILER-CR,CRISPRCasFinder,CRT	no		RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	Orphan	GTCGCACTCTTAATGAGTGCGTGGATTGAAAT,GTCGCACTCTTAATGAGTGCGTGGATTGAAAT,GTCGCACTCTTAATGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	15,15,15	15	Orphan	RT,csa3,cas3,DEDDh,WYL,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas14j,DinG	NA|78aa|up_2|NZ_CP019985.1_2017405_2017639_-,NA|79aa|up_1|NZ_CP019985.1_2017745_2017982_+,NA|50aa|down_0|NZ_CP019985.1_2020671_2020821_+,NA|166aa|down_4|NZ_CP019985.1_2024982_2025480_+	NA|353aa|up_9|NZ_CP019985.1_2009142_2010201_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|up_8|NZ_CP019985.1_2010201_2011071_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|119aa|up_7|NZ_CP019985.1_2012988_2013345_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|up_6|NZ_CP019985.1_2013455_2014364_-	PRK13674, PRK13674, GTP cyclohydrolase I FolE2	NA|159aa|up_5|NZ_CP019985.1_2014694_2015171_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|up_4|NZ_CP019985.1_2015181_2015406_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|268aa|up_3|NZ_CP019985.1_2015450_2016254_+	pfam05675, DUF817, Protein of unknown function (DUF817)	NA|78aa|up_2|NZ_CP019985.1_2017405_2017639_-	NA	NA|79aa|up_1|NZ_CP019985.1_2017745_2017982_+	NA	NA|319aa|up_0|NZ_CP019985.1_2018186_2019143_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|50aa|down_0|NZ_CP019985.1_2020671_2020821_+	NA	NA|236aa|down_1|NZ_CP019985.1_2020872_2021580_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|400aa|down_2|NZ_CP019985.1_2021661_2022861_-	cd03322, RspA, The starvation sensing protein RspA from E	NA|455aa|down_3|NZ_CP019985.1_2023156_2024521_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|166aa|down_4|NZ_CP019985.1_2024982_2025480_+	NA	NA|988aa|down_5|NZ_CP019985.1_2025645_2028609_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|373aa|down_6|NZ_CP019985.1_2028693_2029812_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|2256aa|down_7|NZ_CP019985.1_2030016_2036784_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|206aa|down_8|NZ_CP019985.1_2036800_2037418_+	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases	NA|113aa|down_9|NZ_CP019985.1_2037730_2038069_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
