assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	1	1233611-1233745	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|190aa|up_7|NZ_CP022689.1_1223999_1224569_-,NA|251aa|down_4|NZ_CP022689.1_1241038_1241791_-	NA|44aa|up_9|NZ_CP022689.1_1221892_1222024_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|553aa|up_8|NZ_CP022689.1_1222112_1223771_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|190aa|up_7|NZ_CP022689.1_1223999_1224569_-	NA	NA|328aa|up_6|NZ_CP022689.1_1224940_1225924_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP022689.1_1225899_1227510_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP022689.1_1227493_1228192_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP022689.1_1228278_1229043_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP022689.1_1229128_1230007_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP022689.1_1230345_1232046_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP022689.1_1232056_1233559_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP022689.1_1233758_1234454_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP022689.1_1234528_1236880_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP022689.1_1237043_1239950_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP022689.1_1239961_1240621_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|251aa|down_4|NZ_CP022689.1_1241038_1241791_-	NA	NA|272aa|down_5|NZ_CP022689.1_1242085_1242901_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP022689.1_1243155_1245510_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP022689.1_1245562_1246849_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP022689.1_1246848_1247838_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP022689.1_1247834_1248656_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	2	1258512-1258648	1	PILER-CR	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAATCACCAATATTGAAAAT	21	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|105aa|up_9|NZ_CP022689.1_1249887_1250202_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP022689.1_1250204_1250438_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP022689.1_1250523_1251003_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP022689.1_1251194_1253057_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP022689.1_1253049_1253580_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP022689.1_1253687_1255019_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP022689.1_1255076_1255364_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP022689.1_1255360_1256647_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP022689.1_1256697_1257639_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP022689.1_1257653_1258424_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP022689.1_1258902_1260417_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP022689.1_1260447_1261590_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP022689.1_1261718_1262936_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP022689.1_1263009_1264563_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP022689.1_1264671_1265457_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP022689.1_1265462_1266053_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP022689.1_1266171_1266567_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP022689.1_1266827_1270049_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP022689.1_1270066_1271215_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP022689.1_1271670_1272492_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	3	1463675-1463824	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|591aa|down_6|NZ_CP022689.1_1470921_1472694_-	NA|156aa|up_9|NZ_CP022689.1_1450647_1451115_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_8|NZ_CP022689.1_1452118_1452451_+	pfam07978, NIPSNAP, NIPSNAP	NA|126aa|up_7|NZ_CP022689.1_1452572_1452950_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|405aa|up_6|NZ_CP022689.1_1453132_1454346_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|650aa|up_5|NZ_CP022689.1_1454545_1456495_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|340aa|up_4|NZ_CP022689.1_1456865_1457885_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP022689.1_1458014_1459517_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP022689.1_1459677_1460760_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP022689.1_1460759_1461860_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP022689.1_1462126_1463638_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP022689.1_1463991_1464435_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP022689.1_1464434_1467290_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP022689.1_1467344_1468541_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP022689.1_1468733_1469237_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP022689.1_1469282_1469699_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP022689.1_1469860_1470865_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|591aa|down_6|NZ_CP022689.1_1470921_1472694_-	NA	NA|151aa|down_7|NZ_CP022689.1_1472816_1473269_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP022689.1_1473413_1474007_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_9|NZ_CP022689.1_1474077_1474791_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	4	3140698-3140786	3	CRISPRCasFinder	no	cas3	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC	28	0	0	NA	NA	I-E	1	1	Unclear	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|83aa|up_9|NZ_CP022689.1_3131174_3131423_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP022689.1_3131422_3131758_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP022689.1_3131828_3132620_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP022689.1_3132847_3134485_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP022689.1_3134572_3135871_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP022689.1_3135930_3136845_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP022689.1_3136841_3137990_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|225aa|up_2|NZ_CP022689.1_3138223_3138898_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|207aa|up_1|NZ_CP022689.1_3138911_3139532_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP022689.1_3139686_3140358_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP022689.1_3141421_3142900_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP022689.1_3142926_3144204_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP022689.1_3144522_3145308_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP022689.1_3145377_3146832_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|260aa|down_4|NZ_CP022689.1_3148239_3149019_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP022689.1_3150023_3150599_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP022689.1_3150615_3150876_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_7|NZ_CP022689.1_3150866_3152138_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_8|NZ_CP022689.1_3152215_3152581_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_9|NZ_CP022689.1_3152896_3154696_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	5	3166478-3166690	2,1,4	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,30,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|245aa|up_9|NZ_CP022689.1_3156481_3157216_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP022689.1_3157479_3157632_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP022689.1_3157823_3160523_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP022689.1_3160620_3162183_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP022689.1_3162179_3162716_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP022689.1_3162727_3163783_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP022689.1_3163793_3164540_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP022689.1_3164521_3165172_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP022689.1_3165168_3166092_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP022689.1_3166088_3166382_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP022689.1_3166771_3167809_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022689.1_3168060_3168969_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP022689.1_3168970_3170398_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022689.1_3170397_3171003_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP022689.1_3171052_3171376_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022689.1_3171569_3171881_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022689.1_3171899_3172610_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022689.1_3172609_3173089_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022689.1_3173085_3174135_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022689.1_3174115_3174877_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	6	3690577-3690682	5	CRISPRCasFinder	no		DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCGAGCCGTAGGCCGGATTAGGCGTT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|357aa|up_5|NZ_CP022689.1_3684550_3685621_-,NA	NA|420aa|up_9|NZ_CP022689.1_3678737_3679997_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|NZ_CP022689.1_3679986_3681615_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|NZ_CP022689.1_3681887_3683246_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|NZ_CP022689.1_3683250_3684327_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_5|NZ_CP022689.1_3684550_3685621_-	NA	NA|293aa|up_4|NZ_CP022689.1_3686084_3686963_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|399aa|up_3|NZ_CP022689.1_3687114_3688311_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP022689.1_3688391_3689042_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP022689.1_3689095_3689350_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP022689.1_3689349_3690480_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP022689.1_3690706_3692992_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP022689.1_3693687_3697440_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP022689.1_3697580_3698303_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP022689.1_3698449_3701077_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|543aa|down_4|NZ_CP022689.1_3701284_3702913_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP022689.1_3702909_3703533_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP022689.1_3703676_3708071_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|259aa|down_7|NZ_CP022689.1_3709725_3710502_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_8|NZ_CP022689.1_3710776_3713626_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|217aa|down_9|NZ_CP022689.1_3713825_3714476_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	7	4170904-4171053	6	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	53	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA|22aa|up_2|NZ_CP022689.1_4168991_4169057_+,NA	NA|273aa|up_9|NZ_CP022689.1_4162958_4163777_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP022689.1_4163773_4164340_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP022689.1_4164649_4166422_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP022689.1_4166539_4166992_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP022689.1_4167020_4167761_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP022689.1_4167795_4168317_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP022689.1_4168318_4168921_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP022689.1_4168991_4169057_+	NA	NA|204aa|up_1|NZ_CP022689.1_4169195_4169807_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP022689.1_4169815_4170826_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP022689.1_4171071_4171857_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP022689.1_4171853_4172609_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP022689.1_4172687_4173620_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP022689.1_4173635_4174958_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP022689.1_4175077_4176049_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP022689.1_4176179_4177622_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP022689.1_4177749_4178619_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP022689.1_4178956_4180432_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP022689.1_4180666_4182478_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP022689.1_4182514_4183156_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_002249955.1_ASM224995v1	NZ_CP022689	Escherichia coli strain CDC#03-98 chromosome, complete genome	8	4369514-4369637	7	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|30aa|down_7|NZ_CP022689.1_4378533_4378623_+	NA|471aa|up_9|NZ_CP022689.1_4358967_4360380_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP022689.1_4360936_4361146_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP022689.1_4361601_4362228_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP022689.1_4362248_4364351_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP022689.1_4364354_4365002_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP022689.1_4365065_4365734_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP022689.1_4365730_4366516_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP022689.1_4366519_4367332_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP022689.1_4367343_4368948_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP022689.1_4369073_4369379_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP022689.1_4369951_4371208_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP022689.1_4371248_4372622_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP022689.1_4372836_4373478_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP022689.1_4373517_4374666_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP022689.1_4374956_4376168_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP022689.1_4376280_4377213_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP022689.1_4377209_4378235_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP022689.1_4378533_4378623_+	NA	NA|390aa|down_8|NZ_CP022689.1_4378788_4379958_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP022689.1_4380103_4380685_-	PRK10543, PRK10543, superoxide dismutase [Fe]
