assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	1	1011061-1011455	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|47aa|up_1|NZ_CP041110.1_1009770_1009911_-,NA	NA|434aa|up_9|NZ_CP041110.1_1000467_1001769_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP041110.1_1001816_1004051_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP041110.1_1004128_1004377_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP041110.1_1004376_1004712_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP041110.1_1004782_1005574_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP041110.1_1005801_1007439_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP041110.1_1007526_1008825_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP041110.1_1008884_1009757_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP041110.1_1009770_1009911_-	NA	NA|224aa|up_0|NZ_CP041110.1_1010049_1010721_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041110.1_1012093_1013572_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041110.1_1013598_1014876_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP041110.1_1015194_1015980_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP041110.1_1016049_1017504_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP041110.1_1017597_1018935_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP041110.1_1018912_1019692_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP041110.1_1019688_1020549_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP041110.1_1020696_1021272_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP041110.1_1021288_1021549_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP041110.1_1021539_1022811_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	2	1031135-1031468	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|192aa|up_9|NZ_CP041110.1_1020696_1021272_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_8|NZ_CP041110.1_1021288_1021549_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_7|NZ_CP041110.1_1021539_1022811_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_6|NZ_CP041110.1_1022888_1023254_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_5|NZ_CP041110.1_1023569_1025369_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_4|NZ_CP041110.1_1025368_1027081_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_3|NZ_CP041110.1_1027154_1027889_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|457aa|up_2|NZ_CP041110.1_1028137_1029507_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|51aa|up_1|NZ_CP041110.1_1029599_1029752_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP041110.1_1029944_1031057_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP041110.1_1031550_1032588_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041110.1_1032839_1033748_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041110.1_1033749_1035177_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041110.1_1035176_1035782_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041110.1_1035831_1036155_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041110.1_1036348_1036660_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041110.1_1036678_1037389_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041110.1_1037388_1037868_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041110.1_1037864_1038914_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041110.1_1038894_1039656_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	3	1521534-1521651	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|62aa|up_9|NZ_CP041110.1_1510819_1511005_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP041110.1_1511017_1511917_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP041110.1_1512109_1513300_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP041110.1_1513296_1514556_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP041110.1_1514545_1516174_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP041110.1_1516446_1517805_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP041110.1_1517809_1518886_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP041110.1_1519348_1519999_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP041110.1_1520052_1520307_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP041110.1_1520306_1521437_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP041110.1_1521670_1523956_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP041110.1_1524651_1528404_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP041110.1_1528531_1529254_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP041110.1_1529400_1532028_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP041110.1_1532176_1533865_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP041110.1_1533861_1534485_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP041110.1_1534628_1539023_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP041110.1_1539023_1540673_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP041110.1_1540677_1541454_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP041110.1_1541527_1542712_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	4	2174430-2174553	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|30aa|down_7|NZ_CP041110.1_2183449_2183539_+	NA|471aa|up_9|NZ_CP041110.1_2163884_2165297_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041110.1_2165853_2166063_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041110.1_2166517_2167144_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041110.1_2167164_2169267_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP041110.1_2169270_2169918_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041110.1_2169981_2170650_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041110.1_2170646_2171432_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041110.1_2171435_2172248_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041110.1_2172259_2173864_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041110.1_2173989_2174295_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041110.1_2174867_2176124_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041110.1_2176164_2177538_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041110.1_2177752_2178394_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041110.1_2178433_2179582_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041110.1_2179872_2181084_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041110.1_2181196_2182129_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041110.1_2182125_2183151_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041110.1_2183449_2183539_+	NA	NA|390aa|down_8|NZ_CP041110.1_2183704_2184874_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041110.1_2185108_2185690_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	5	2800187-2800278	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|60aa|up_7|NZ_CP041110.1_2794346_2794526_-,NA	NA|1321aa|up_9|NZ_CP041110.1_2789527_2793490_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP041110.1_2793529_2794168_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP041110.1_2794346_2794526_-	NA	NA|364aa|up_6|NZ_CP041110.1_2794455_2795547_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP041110.1_2795546_2796239_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP041110.1_2796250_2796637_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP041110.1_2796644_2797445_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP041110.1_2797454_2798045_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP041110.1_2798055_2798550_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP041110.1_2798570_2799899_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP041110.1_2800701_2801298_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP041110.1_2801318_2801546_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP041110.1_2801583_2802825_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP041110.1_2803117_2804374_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP041110.1_2804634_2805555_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP041110.1_2805554_2805860_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP041110.1_2806011_2806611_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP041110.1_2806607_2809154_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP041110.1_2809153_2810326_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP041110.1_2810455_2811148_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	6	3147730-3147874	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|94aa|up_2|NZ_CP041110.1_3144079_3144361_+,NA	NA|230aa|up_9|NZ_CP041110.1_3140394_3141084_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|up_8|NZ_CP041110.1_3141679_3141886_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|up_7|NZ_CP041110.1_3141961_3142258_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|up_6|NZ_CP041110.1_3142263_3143049_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|up_5|NZ_CP041110.1_3143045_3143726_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_4|NZ_CP041110.1_3143722_3143905_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_3|NZ_CP041110.1_3143877_3144069_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_2|NZ_CP041110.1_3144079_3144361_+	NA	NA|390aa|up_1|NZ_CP041110.1_3144507_3145676_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|428aa|up_0|NZ_CP041110.1_3146380_3147664_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP041110.1_3147897_3150159_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP041110.1_3150341_3151775_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP041110.1_3151850_3152903_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|332aa|down_3|NZ_CP041110.1_3154080_3155076_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP041110.1_3155230_3156049_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP041110.1_3156049_3157108_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP041110.1_3157110_3157800_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP041110.1_3157799_3158573_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP041110.1_3158739_3158889_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP041110.1_3159017_3159806_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	7	3380796-3380892	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|231aa|up_9|NZ_CP041110.1_3372582_3373275_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP041110.1_3373494_3374037_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP041110.1_3374516_3375383_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP041110.1_3375384_3375597_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP041110.1_3375704_3376226_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP041110.1_3376261_3377647_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP041110.1_3377820_3378315_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP041110.1_3378317_3379040_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP041110.1_3379157_3379667_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP041110.1_3379663_3380731_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP041110.1_3380925_3381819_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP041110.1_3381815_3382631_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP041110.1_3382641_3383901_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP041110.1_3383910_3385578_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP041110.1_3385894_3386944_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP041110.1_3386965_3388201_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP041110.1_3388211_3388997_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP041110.1_3389224_3390370_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP041110.1_3390391_3391693_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP041110.1_3391749_3393111_-	PRK08044, PRK08044, allantoinase AllB
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	8	3521037-3521181	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|28aa|down_2|NZ_CP041110.1_3523226_3523310_-	NA|357aa|up_9|NZ_CP041110.1_3506175_3507246_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP041110.1_3507338_3507920_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP041110.1_3507924_3509742_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP041110.1_3509897_3511271_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP041110.1_3511346_3512666_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP041110.1_3513072_3514368_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP041110.1_3514425_3515115_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP041110.1_3515304_3516507_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP041110.1_3516503_3519650_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP041110.1_3519775_3520960_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP041110.1_3521204_3522113_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP041110.1_3522237_3523149_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP041110.1_3523226_3523310_-	NA	NA|95aa|down_3|NZ_CP041110.1_3523795_3524080_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP041110.1_3524151_3524829_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP041110.1_3525086_3525278_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP041110.1_3525327_3525852_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP041110.1_3526034_3526493_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP041110.1_3526612_3527422_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP041110.1_3527438_3528554_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	9	3647107-3647362	3	PILER-CR	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	CATCAGGCACCGTGCACCGGACGCCGGATGCGGCGTAAACGCCTTATCCGGCCT	54	1	1	3647278-3647341	NZ_CP041110.1_3647363-3647426	NA	2	2	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|326aa|up_2|NZ_CP041110.1_3643714_3644692_-,NA	NA|156aa|up_9|NZ_CP041110.1_3637542_3638010_-	pfam03748, FliL, Flagellar basal body-associated protein FliL	NA|354aa|up_8|NZ_CP041110.1_3638017_3639079_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|104aa|up_7|NZ_CP041110.1_3639075_3639387_-	PRK06064, PRK06064, thiolase domain-containing protein	NA|131aa|up_6|NZ_CP041110.1_3639391_3639784_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_5|NZ_CP041110.1_3639806_3641123_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_4|NZ_CP041110.1_3641413_3642328_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_3|NZ_CP041110.1_3642813_3643656_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_2|NZ_CP041110.1_3643714_3644692_-	NA	NA|310aa|up_1|NZ_CP041110.1_3644708_3645638_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_0|NZ_CP041110.1_3645652_3647029_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|down_0|NZ_CP041110.1_3647450_3647750_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|367aa|down_1|NZ_CP041110.1_3647749_3648850_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|222aa|down_2|NZ_CP041110.1_3648864_3649530_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_3|NZ_CP041110.1_3649733_3650519_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_4|NZ_CP041110.1_3650597_3651335_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_5|NZ_CP041110.1_3651334_3652537_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_6|NZ_CP041110.1_3652680_3653394_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_7|NZ_CP041110.1_3653393_3653825_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_8|NZ_CP041110.1_3653827_3654163_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_9|NZ_CP041110.1_3654244_3654982_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	10	3884569-3884704	4	PILER-CR	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|126aa|up_9|NZ_CP041110.1_3875275_3875653_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP041110.1_3875659_3876502_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP041110.1_3876579_3877059_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP041110.1_3877250_3879113_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP041110.1_3879105_3879636_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP041110.1_3879743_3881075_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP041110.1_3881133_3881421_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP041110.1_3881417_3882704_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP041110.1_3882754_3883696_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP041110.1_3883710_3884481_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP041110.1_3884953_3886468_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP041110.1_3886498_3887641_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP041110.1_3887769_3888987_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP041110.1_3889060_3890614_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP041110.1_3890722_3891508_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP041110.1_3891513_3892104_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP041110.1_3892312_3892708_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP041110.1_3892969_3896191_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP041110.1_3896208_3897357_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP041110.1_3897812_3898634_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002246595.2_ASM224659v3	NZ_CP041110	Escherichia coli strain ECCTRSRTH03 chromosome, complete genome	11	3892142-3892283	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|96aa|up_9|NZ_CP041110.1_3881133_3881421_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP041110.1_3881417_3882704_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP041110.1_3882754_3883696_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP041110.1_3883710_3884481_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP041110.1_3884953_3886468_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP041110.1_3886498_3887641_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP041110.1_3887769_3888987_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP041110.1_3889060_3890614_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP041110.1_3890722_3891508_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP041110.1_3891513_3892104_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP041110.1_3892312_3892708_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP041110.1_3892969_3896191_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP041110.1_3896208_3897357_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP041110.1_3897812_3898634_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP041110.1_3898800_3899715_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP041110.1_3899780_3900731_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP041110.1_3900732_3901182_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP041110.1_3901306_3901801_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP041110.1_3901800_3904617_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP041110.1_3904659_3905601_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
