assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002243535.1_ASM224353v1	NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	1	1512921-1513010	1	CRISPRCasFinder	no	RT,csa3	cas3,RT,DEDDh,cas14j,csa3,DinG,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	ATTCTTCCCCCATGCGGAAGGTGTAGAG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas14j,csa3,DinG,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|66aa|up_0|NZ_CP020017.1_1512471_1512669_+,NA	NA|368aa|up_9|NZ_CP020017.1_1501791_1502895_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|119aa|up_8|NZ_CP020017.1_1503087_1503444_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	RT|287aa|up_7|NZ_CP020017.1_1503497_1504358_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|443aa|up_6|NZ_CP020017.1_1504938_1506267_-	pfam03051, Peptidase_C1_2, Peptidase C1-like family	NA|340aa|up_5|NZ_CP020017.1_1506330_1507350_-	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|66aa|up_4|NZ_CP020017.1_1507806_1508004_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|177aa|up_3|NZ_CP020017.1_1508439_1508970_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|161aa|up_2|NZ_CP020017.1_1509000_1509483_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|394aa|up_1|NZ_CP020017.1_1509555_1510737_-	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|66aa|up_0|NZ_CP020017.1_1512471_1512669_+	NA	NA|233aa|down_0|NZ_CP020017.1_1513116_1513815_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|140aa|down_1|NZ_CP020017.1_1514003_1514423_-	pfam09391, DUF2000, Protein of unknown function (DUF2000)	NA|274aa|down_2|NZ_CP020017.1_1514434_1515256_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	csa3|231aa|down_3|NZ_CP020017.1_1515867_1516560_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|453aa|down_4|NZ_CP020017.1_1516677_1518036_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|402aa|down_5|NZ_CP020017.1_1518232_1519438_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|66aa|down_6|NZ_CP020017.1_1519750_1519948_-	pfam04237, YjbR, YjbR	NA|197aa|down_7|NZ_CP020017.1_1520119_1520710_-	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|620aa|down_8|NZ_CP020017.1_1521054_1522914_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|77aa|down_9|NZ_CP020017.1_1522991_1523222_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones
GCF_002243535.1_ASM224353v1	NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2	1866889-1869507	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	RT,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas3,RT,DEDDh,cas14j,csa3,DinG,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-A,Type III-C	GTTCTCGTCCCCTAATAATGGGGTTAGGTATCTATT,GTTCTCGTCCCCTAATAATGGGGTTAGGTATCTATT,GTTCTCGTCCCCTAATAATGGGGTTAGGTATCTATT	36,36,36	0	0	NA	NA	NA:NA:NA	36,36,33	36	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	cas3,RT,DEDDh,cas14j,csa3,DinG,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_3|NZ_CP020017.1_1863331_1863904_+,NA|87aa|down_7|NZ_CP020017.1_1877333_1877594_-,NA|304aa|down_9|NZ_CP020017.1_1879831_1880743_-	NA|317aa|up_9|NZ_CP020017.1_1856448_1857399_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|348aa|up_8|NZ_CP020017.1_1858051_1859095_+	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	NA|559aa|up_7|NZ_CP020017.1_1859105_1860782_+	cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins	NA|113aa|up_6|NZ_CP020017.1_1860778_1861117_+	TIGR02256, Uncharacterized_protein_y4qB, integrative and conjugative element protein, VC0181 family	NA|287aa|up_5|NZ_CP020017.1_1861255_1862116_+	pfam18179, SUa-2TM, SMODS- and Ubiquitin system-associated 2TM effector domain	NA|69aa|up_4|NZ_CP020017.1_1862200_1862407_-	pfam13384, HTH_23, Homeodomain-like domain	NA|191aa|up_3|NZ_CP020017.1_1863331_1863904_+	NA	NA|153aa|up_2|NZ_CP020017.1_1863954_1864413_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|109aa|up_1|NZ_CP020017.1_1864884_1865211_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas1|303aa|up_0|NZ_CP020017.1_1865938_1866847_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	csm6|416aa|down_0|NZ_CP020017.1_1869652_1870900_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|338aa|down_1|NZ_CP020017.1_1870901_1871915_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|299aa|down_2|NZ_CP020017.1_1871932_1872829_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|225aa|down_3|NZ_CP020017.1_1872825_1873500_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|143aa|down_4|NZ_CP020017.1_1873511_1873940_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|763aa|down_5|NZ_CP020017.1_1873948_1876237_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|249aa|down_6|NZ_CP020017.1_1876229_1876976_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|87aa|down_7|NZ_CP020017.1_1877333_1877594_-	NA	NA|315aa|down_8|NZ_CP020017.1_1878727_1879672_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|304aa|down_9|NZ_CP020017.1_1879831_1880743_-	NA
