assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	1	49423-49497	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	TATCGGACATAGGATCCGTTATTTG	25	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|91aa|down_0|NZ_CP022655.2_49515_49788_-	NA|96aa|up_9|NZ_CP022655.2_36063_36351_+	PRK13259, PRK13259, septation regulator SpoVG	NA|467aa|up_8|NZ_CP022655.2_36471_37872_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|215aa|up_7|NZ_CP022655.2_38073_38718_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|187aa|up_6|NZ_CP022655.2_38895_39456_+	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase	NA|78aa|up_5|NZ_CP022655.2_39598_39832_+	pfam10955, DUF2757, Protein of unknown function (DUF2757)	cas3|1154aa|up_4|NZ_CP022655.2_40097_43559_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|360aa|up_3|NZ_CP022655.2_43724_44804_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|181aa|up_2|NZ_CP022655.2_45402_45945_+	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T	NA|429aa|up_1|NZ_CP022655.2_46029_47316_-	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|561aa|up_0|NZ_CP022655.2_47500_49183_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|91aa|down_0|NZ_CP022655.2_49515_49788_-	NA	NA|515aa|down_1|NZ_CP022655.2_50083_51628_+	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|101aa|down_2|NZ_CP022655.2_51856_52159_+	cd13831, HU, histone-like DNA-binding protein HU	NA|94aa|down_3|NZ_CP022655.2_52160_52442_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|318aa|down_4|NZ_CP022655.2_52684_53638_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|down_5|NZ_CP022655.2_53627_54596_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|253aa|down_6|NZ_CP022655.2_54592_55351_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|337aa|down_7|NZ_CP022655.2_55397_56408_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|95aa|down_8|NZ_CP022655.2_56553_56838_+	TIGR02892, conserved_hypothetical_protein, sporulation protein YabP	NA|192aa|down_9|NZ_CP022655.2_56867_57443_+	TIGR02893, Spore_protein_YabQ, spore cortex biosynthesis protein YabQ
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	2	304213-304358	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GGCGGCGGATGCGGAAGGTGTGCCCGATGTCAATCGAACCGTGCTGCAGCCGGCG	55	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|72aa|up_9|NZ_CP022655.2_293826_294042_-,NA	NA|72aa|up_9|NZ_CP022655.2_293826_294042_-	NA	NA|269aa|up_8|NZ_CP022655.2_294080_294887_+	PRK07328, PRK07328, histidinol-phosphatase; Provisional	NA|317aa|up_7|NZ_CP022655.2_294982_295933_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|578aa|up_6|NZ_CP022655.2_296142_297876_+	sd00006, TPR, Tetratricopeptide repeat	NA|316aa|up_5|NZ_CP022655.2_298000_298948_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|317aa|up_4|NZ_CP022655.2_299214_300165_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|294aa|up_3|NZ_CP022655.2_300239_301121_+	PRK05416, PRK05416, RNase adapter RapZ	NA|329aa|up_2|NZ_CP022655.2_301133_302120_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|311aa|up_1|NZ_CP022655.2_302124_303057_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|90aa|up_0|NZ_CP022655.2_303192_303462_+	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|264aa|down_0|NZ_CP022655.2_304569_305361_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|196aa|down_1|NZ_CP022655.2_305419_306007_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|342aa|down_2|NZ_CP022655.2_306595_307621_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|335aa|down_3|NZ_CP022655.2_307786_308791_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|394aa|down_4|NZ_CP022655.2_308903_310085_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|252aa|down_5|NZ_CP022655.2_310361_311117_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|513aa|down_6|NZ_CP022655.2_311118_312657_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|432aa|down_7|NZ_CP022655.2_312934_314230_+	PRK00077, eno, enolase; Provisional	NA|255aa|down_8|NZ_CP022655.2_315468_316233_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|77aa|down_9|NZ_CP022655.2_316459_316690_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	3	374308-374381	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TATCGGACATAGGATCCGCTATTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|132aa|up_4|NZ_CP022655.2_368895_369291_+,NA	NA|251aa|up_9|NZ_CP022655.2_363664_364417_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|356aa|up_8|NZ_CP022655.2_364447_365515_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|407aa|up_7|NZ_CP022655.2_365682_366903_+	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2	NA|166aa|up_6|NZ_CP022655.2_366878_367376_+	pfam12867, DinB_2, DinB superfamily	NA|451aa|up_5|NZ_CP022655.2_367393_368746_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|132aa|up_4|NZ_CP022655.2_368895_369291_+	NA	NA|188aa|up_3|NZ_CP022655.2_370018_370582_+	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein	NA|573aa|up_2|NZ_CP022655.2_370728_372447_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|277aa|up_1|NZ_CP022655.2_372443_373274_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|109aa|up_0|NZ_CP022655.2_373543_373870_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|441aa|down_0|NZ_CP022655.2_374975_376298_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|609aa|down_1|NZ_CP022655.2_376263_378090_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|548aa|down_2|NZ_CP022655.2_378067_379711_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|453aa|down_3|NZ_CP022655.2_379732_381091_+	pfam02447, GntP_permease, GntP family permease	NA|508aa|down_4|NZ_CP022655.2_381369_382893_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|258aa|down_5|NZ_CP022655.2_382992_383766_-	pfam08862, DUF1829, Domain of unknown function DUF1829	NA|301aa|down_6|NZ_CP022655.2_384275_385178_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|529aa|down_7|NZ_CP022655.2_385354_386941_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|629aa|down_8|NZ_CP022655.2_387052_388939_-	pfam00395, SLH, S-layer homology domain	NA|208aa|down_9|NZ_CP022655.2_389112_389736_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	4	523877-523951	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTATCGGACATCAGATCCGTTATTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|71aa|up_3|NZ_CP022655.2_518482_518695_-,NA|527aa|up_2|NZ_CP022655.2_518963_520544_+,NA|55aa|up_1|NZ_CP022655.2_521132_521297_+,NA	NA|308aa|up_9|NZ_CP022655.2_511348_512272_+	pfam03313, SDH_alpha, Serine dehydratase alpha chain	NA|83aa|up_8|NZ_CP022655.2_512638_512887_+	pfam12294, DUF3626, Protein of unknown function (DUF3626)	NA|419aa|up_7|NZ_CP022655.2_513091_514348_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|321aa|up_6|NZ_CP022655.2_514406_515369_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|276aa|up_5|NZ_CP022655.2_515365_516193_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|601aa|up_4|NZ_CP022655.2_516485_518288_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|71aa|up_3|NZ_CP022655.2_518482_518695_-	NA	NA|527aa|up_2|NZ_CP022655.2_518963_520544_+	NA	NA|55aa|up_1|NZ_CP022655.2_521132_521297_+	NA	NA|534aa|up_0|NZ_CP022655.2_521768_523370_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|218aa|down_0|NZ_CP022655.2_524332_524986_-	cd13635, PBP2_Ttha1568_Mqnd, A menaquinone biosynthetic enzyme exhibits the type 2 periplasmic-binding protein fold	NA|244aa|down_1|NZ_CP022655.2_525453_526185_-	PRK08236, PRK08236, hypothetical protein; Provisional	NA|210aa|down_2|NZ_CP022655.2_526352_526982_-	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases	NA|318aa|down_3|NZ_CP022655.2_527256_528210_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|307aa|down_4|NZ_CP022655.2_528213_529134_+	cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases	NA|304aa|down_5|NZ_CP022655.2_529109_530021_+	PRK09633, ligD, DNA ligase D	NA|129aa|down_6|NZ_CP022655.2_529914_530301_+	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188)	NA|296aa|down_7|NZ_CP022655.2_530435_531323_-	pfam13349, DUF4097, Putative adhesin	NA|186aa|down_8|NZ_CP022655.2_531322_531880_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|107aa|down_9|NZ_CP022655.2_531876_532197_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	5	868871-868993	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATAGCGGATCGTATGTCCGATAA	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|103aa|up_5|NZ_CP022655.2_862624_862933_-,NA|160aa|up_4|NZ_CP022655.2_863065_863545_-,NA|72aa|down_0|NZ_CP022655.2_869311_869527_-,NA|94aa|down_7|NZ_CP022655.2_879919_880201_+	NA|213aa|up_9|NZ_CP022655.2_859111_859750_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|354aa|up_8|NZ_CP022655.2_859968_861030_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|192aa|up_7|NZ_CP022655.2_861285_861861_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|258aa|up_6|NZ_CP022655.2_861857_862631_+	pfam14285, DUF4367, Domain of unknown function (DUF4367)	NA|103aa|up_5|NZ_CP022655.2_862624_862933_-	NA	NA|160aa|up_4|NZ_CP022655.2_863065_863545_-	NA	NA|512aa|up_3|NZ_CP022655.2_863789_865325_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|178aa|up_2|NZ_CP022655.2_865371_865905_-	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|238aa|up_1|NZ_CP022655.2_865934_866648_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|316aa|up_0|NZ_CP022655.2_867133_868081_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|72aa|down_0|NZ_CP022655.2_869311_869527_-	NA	NA|950aa|down_1|NZ_CP022655.2_869748_872598_+	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|94aa|down_2|NZ_CP022655.2_872700_872982_-	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown]	NA|342aa|down_3|NZ_CP022655.2_873117_874143_+	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only]	NA|574aa|down_4|NZ_CP022655.2_875530_877252_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|627aa|down_5|NZ_CP022655.2_877244_879125_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|109aa|down_6|NZ_CP022655.2_879311_879638_+	PRK12747, PRK12747, short chain dehydrogenase; Provisional	NA|94aa|down_7|NZ_CP022655.2_879919_880201_+	NA	NA|147aa|down_8|NZ_CP022655.2_880342_880783_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|129aa|down_9|NZ_CP022655.2_880995_881382_+	cd07242, VOC_BsYqjT, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YqjT
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	6	897296-897516	1	CRT	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATAACGGAACCTATGTCCGA	21	0	0	NA	NA	NA	4	4	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|62aa|up_4|NZ_CP022655.2_892246_892432_-,NA	NA|136aa|up_9|NZ_CP022655.2_886459_886867_-	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|610aa|up_8|NZ_CP022655.2_887098_888928_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|329aa|up_7|NZ_CP022655.2_888924_889911_+	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR	NA|114aa|up_6|NZ_CP022655.2_890232_890574_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|514aa|up_5|NZ_CP022655.2_890570_892112_+	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|62aa|up_4|NZ_CP022655.2_892246_892432_-	NA	NA|125aa|up_3|NZ_CP022655.2_892573_892948_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|326aa|up_2|NZ_CP022655.2_893217_894195_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|225aa|up_1|NZ_CP022655.2_894538_895213_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|451aa|up_0|NZ_CP022655.2_895475_896828_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|152aa|down_0|NZ_CP022655.2_897864_898320_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|315aa|down_1|NZ_CP022655.2_898416_899361_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|207aa|down_2|NZ_CP022655.2_899363_899984_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|326aa|down_3|NZ_CP022655.2_900095_901073_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|305aa|down_4|NZ_CP022655.2_901221_902136_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|153aa|down_5|NZ_CP022655.2_902377_902836_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|226aa|down_6|NZ_CP022655.2_903144_903822_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|835aa|down_7|NZ_CP022655.2_903818_906323_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|227aa|down_8|NZ_CP022655.2_906326_907007_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|344aa|down_9|NZ_CP022655.2_907007_908039_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	7	897559-897647	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCTGGAGATCAGGCCCAAGTCTC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|62aa|up_4|NZ_CP022655.2_892246_892432_-,NA	NA|136aa|up_9|NZ_CP022655.2_886459_886867_-	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|610aa|up_8|NZ_CP022655.2_887098_888928_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|329aa|up_7|NZ_CP022655.2_888924_889911_+	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR	NA|114aa|up_6|NZ_CP022655.2_890232_890574_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|514aa|up_5|NZ_CP022655.2_890570_892112_+	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|62aa|up_4|NZ_CP022655.2_892246_892432_-	NA	NA|125aa|up_3|NZ_CP022655.2_892573_892948_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|326aa|up_2|NZ_CP022655.2_893217_894195_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|225aa|up_1|NZ_CP022655.2_894538_895213_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|451aa|up_0|NZ_CP022655.2_895475_896828_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|152aa|down_0|NZ_CP022655.2_897864_898320_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|315aa|down_1|NZ_CP022655.2_898416_899361_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|207aa|down_2|NZ_CP022655.2_899363_899984_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|326aa|down_3|NZ_CP022655.2_900095_901073_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|305aa|down_4|NZ_CP022655.2_901221_902136_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|153aa|down_5|NZ_CP022655.2_902377_902836_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|226aa|down_6|NZ_CP022655.2_903144_903822_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|835aa|down_7|NZ_CP022655.2_903818_906323_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|227aa|down_8|NZ_CP022655.2_906326_907007_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|344aa|down_9|NZ_CP022655.2_907007_908039_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	8	940894-940967	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	ATCGGACATACGATCCGTTATTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|163aa|down_1|NZ_CP022655.2_941942_942431_+,NA|170aa|down_2|NZ_CP022655.2_942711_943221_+,NA|154aa|down_4|NZ_CP022655.2_944414_944876_+,NA|76aa|down_6|NZ_CP022655.2_946028_946256_+,NA|268aa|down_8|NZ_CP022655.2_946722_947526_+	NA|371aa|up_9|NZ_CP022655.2_920917_922030_+	cd04747, OYE_like_5_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 5	NA|1129aa|up_8|NZ_CP022655.2_922682_926069_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|405aa|up_7|NZ_CP022655.2_926095_927310_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|1003aa|up_6|NZ_CP022655.2_927614_930623_+	COG5498, ACF2, Predicted glycosyl hydrolase [Cell envelope biogenesis, outer membrane]	NA|360aa|up_5|NZ_CP022655.2_930969_932049_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|763aa|up_4|NZ_CP022655.2_933595_935884_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|308aa|up_3|NZ_CP022655.2_936051_936975_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|287aa|up_2|NZ_CP022655.2_936991_937852_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|507aa|up_1|NZ_CP022655.2_937931_939452_+	cd13583, PBP2_AlgQ_like_4, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|354aa|up_0|NZ_CP022655.2_939793_940855_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|120aa|down_0|NZ_CP022655.2_941332_941692_+	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)	NA|163aa|down_1|NZ_CP022655.2_941942_942431_+	NA	NA|170aa|down_2|NZ_CP022655.2_942711_943221_+	NA	NA|289aa|down_3|NZ_CP022655.2_943506_944373_+	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase	NA|154aa|down_4|NZ_CP022655.2_944414_944876_+	NA	NA|323aa|down_5|NZ_CP022655.2_944925_945894_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|76aa|down_6|NZ_CP022655.2_946028_946256_+	NA	NA|117aa|down_7|NZ_CP022655.2_946318_946669_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|268aa|down_8|NZ_CP022655.2_946722_947526_+	NA	NA|1406aa|down_9|NZ_CP022655.2_947734_951952_-	COG5498, ACF2, Predicted glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	9	1054339-1054413	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CTATCGGACATCAGATCCGTTATTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|168aa|up_4|NZ_CP022655.2_1048630_1049134_-,NA|126aa|down_9|NZ_CP022655.2_1068441_1068819_-	NA|82aa|up_9|NZ_CP022655.2_1043881_1044127_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|124aa|up_8|NZ_CP022655.2_1044166_1044538_+	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|341aa|up_7|NZ_CP022655.2_1044675_1045698_+	COG5628, COG5628, Predicted acetyltransferase [General function prediction only]	NA|252aa|up_6|NZ_CP022655.2_1045810_1046566_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|430aa|up_5|NZ_CP022655.2_1047184_1048474_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|168aa|up_4|NZ_CP022655.2_1048630_1049134_-	NA	NA|364aa|up_3|NZ_CP022655.2_1049394_1050486_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|213aa|up_2|NZ_CP022655.2_1050705_1051344_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|157aa|up_1|NZ_CP022655.2_1051388_1051859_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_0|NZ_CP022655.2_1052362_1053658_+	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism]	NA|393aa|down_0|NZ_CP022655.2_1054585_1055764_-	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional	NA|349aa|down_1|NZ_CP022655.2_1055898_1056945_-	cd05281, TDH, Threonine dehydrogenase	NA|186aa|down_2|NZ_CP022655.2_1057155_1057713_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|347aa|down_3|NZ_CP022655.2_1057953_1058994_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|320aa|down_4|NZ_CP022655.2_1059306_1060266_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_5|NZ_CP022655.2_1060279_1061161_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|down_6|NZ_CP022655.2_1061280_1062855_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|427aa|down_7|NZ_CP022655.2_1062871_1064152_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|1262aa|down_8|NZ_CP022655.2_1064366_1068152_-	TIGR01451, unnamed_protein_product, conserved repeat domain	NA|126aa|down_9|NZ_CP022655.2_1068441_1068819_-	NA
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	10	1407680-1407752	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATAACGGATCGTATGTCCGATA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|93aa|up_1|NZ_CP022655.2_1405759_1406038_-,NA	NA|290aa|up_9|NZ_CP022655.2_1393809_1394679_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|up_8|NZ_CP022655.2_1394699_1395590_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|510aa|up_7|NZ_CP022655.2_1395645_1397175_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|627aa|up_6|NZ_CP022655.2_1397514_1399395_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|543aa|up_5|NZ_CP022655.2_1399369_1400998_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|411aa|up_4|NZ_CP022655.2_1401161_1402394_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|149aa|up_3|NZ_CP022655.2_1402623_1403070_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|606aa|up_2|NZ_CP022655.2_1403785_1405603_+	COG5520, COG5520, O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]	NA|93aa|up_1|NZ_CP022655.2_1405759_1406038_-	NA	NA|382aa|up_0|NZ_CP022655.2_1406135_1407281_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|843aa|down_0|NZ_CP022655.2_1407990_1410519_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|413aa|down_1|NZ_CP022655.2_1410747_1411986_+	COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and metabolism]	NA|279aa|down_2|NZ_CP022655.2_1412263_1413100_+	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|201aa|down_3|NZ_CP022655.2_1413193_1413796_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|379aa|down_4|NZ_CP022655.2_1413792_1414929_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|368aa|down_5|NZ_CP022655.2_1414981_1416085_-	cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria	NA|163aa|down_6|NZ_CP022655.2_1416326_1416815_+	sd00025, zf-RanBP2, RanBP2-type zinc finger	NA|200aa|down_7|NZ_CP022655.2_1416913_1417513_+	cd09620, CBM9_like_3, DOMON-like type 9 carbohydrate binding module	NA|294aa|down_8|NZ_CP022655.2_1417767_1418649_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|544aa|down_9|NZ_CP022655.2_1419649_1421281_+	pfam00877, NLPC_P60, NlpC/P60 family
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	11	1926813-1926887	10	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CAGAATAACGGATCGTATGTCCGAT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|160aa|down_7|NZ_CP022655.2_1936276_1936756_+	NA|192aa|up_9|NZ_CP022655.2_1913082_1913658_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|115aa|up_8|NZ_CP022655.2_1913657_1914002_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|447aa|up_7|NZ_CP022655.2_1914195_1915536_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|599aa|up_6|NZ_CP022655.2_1915596_1917393_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|537aa|up_5|NZ_CP022655.2_1917389_1919000_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|545aa|up_4|NZ_CP022655.2_1919053_1920688_+	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|596aa|up_3|NZ_CP022655.2_1921284_1923072_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|240aa|up_2|NZ_CP022655.2_1923251_1923971_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|292aa|up_1|NZ_CP022655.2_1924104_1924980_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|360aa|up_0|NZ_CP022655.2_1925157_1926237_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|391aa|down_0|NZ_CP022655.2_1927040_1928213_-	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|506aa|down_1|NZ_CP022655.2_1928443_1929961_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|730aa|down_2|NZ_CP022655.2_1930039_1932229_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|146aa|down_3|NZ_CP022655.2_1932234_1932672_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|380aa|down_4|NZ_CP022655.2_1932668_1933808_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|575aa|down_5|NZ_CP022655.2_1933853_1935578_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|88aa|down_6|NZ_CP022655.2_1935580_1935844_+	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|160aa|down_7|NZ_CP022655.2_1936276_1936756_+	NA	NA|85aa|down_8|NZ_CP022655.2_1937049_1937304_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|279aa|down_9|NZ_CP022655.2_1937643_1938480_+	pfam01841, Transglut_core, Transglutaminase-like superfamily
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	12	3933800-3933875	11	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CAAATAACGGATCGTATGTCCGATA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|115aa|up_2|NZ_CP022655.2_3930776_3931121_-,NA|116aa|up_1|NZ_CP022655.2_3931117_3931465_-,NA|367aa|down_7|NZ_CP022655.2_3941058_3942159_+	NA|108aa|up_9|NZ_CP022655.2_3925508_3925832_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|159aa|up_8|NZ_CP022655.2_3925841_3926318_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|368aa|up_7|NZ_CP022655.2_3926322_3927426_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|142aa|up_6|NZ_CP022655.2_3927662_3928088_+	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|314aa|up_5|NZ_CP022655.2_3928187_3929129_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|333aa|up_4|NZ_CP022655.2_3929314_3930313_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|61aa|up_3|NZ_CP022655.2_3930420_3930603_-	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|115aa|up_2|NZ_CP022655.2_3930776_3931121_-	NA	NA|116aa|up_1|NZ_CP022655.2_3931117_3931465_-	NA	NA|615aa|up_0|NZ_CP022655.2_3931703_3933548_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|218aa|down_0|NZ_CP022655.2_3934430_3935084_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|249aa|down_1|NZ_CP022655.2_3935080_3935827_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|362aa|down_2|NZ_CP022655.2_3936008_3937094_-	COG5401, COG5401, Spore germination protein [General function prediction only]	NA|185aa|down_3|NZ_CP022655.2_3937231_3937786_+	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism]	NA|119aa|down_4|NZ_CP022655.2_3937890_3938247_-	pfam07883, Cupin_2, Cupin domain	NA|393aa|down_5|NZ_CP022655.2_3938406_3939585_-	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|444aa|down_6|NZ_CP022655.2_3939730_3941062_+	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|367aa|down_7|NZ_CP022655.2_3941058_3942159_+	NA	NA|371aa|down_8|NZ_CP022655.2_3942155_3943268_+	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family	NA|357aa|down_9|NZ_CP022655.2_3943307_3944378_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	13	4602791-4602863	12	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TACCGGACATTGGTTCCGCTATT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|51aa|up_9|NZ_CP022655.2_4591250_4591403_+,NA	NA|51aa|up_9|NZ_CP022655.2_4591250_4591403_+	NA	NA|186aa|up_8|NZ_CP022655.2_4591671_4592229_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|500aa|up_7|NZ_CP022655.2_4592826_4594326_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|319aa|up_6|NZ_CP022655.2_4595074_4596031_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|314aa|up_5|NZ_CP022655.2_4596036_4596978_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|642aa|up_4|NZ_CP022655.2_4597194_4599120_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|537aa|up_3|NZ_CP022655.2_4599091_4600702_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|182aa|up_2|NZ_CP022655.2_4600956_4601502_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|111aa|up_1|NZ_CP022655.2_4601651_4601984_+	PRK10089, PRK10089, chaperone CsaA	NA|214aa|up_0|NZ_CP022655.2_4602134_4602776_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|269aa|down_0|NZ_CP022655.2_4603159_4603966_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|410aa|down_1|NZ_CP022655.2_4604055_4605285_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|245aa|down_2|NZ_CP022655.2_4606423_4607158_-	COG1664, CcmA, Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]	NA|224aa|down_3|NZ_CP022655.2_4607179_4607851_-	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|222aa|down_4|NZ_CP022655.2_4607834_4608500_-	pfam13171, DUF4004, Protein of unknown function (DUF4004)	NA|302aa|down_5|NZ_CP022655.2_4608768_4609674_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|233aa|down_6|NZ_CP022655.2_4609679_4610378_-	cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs	NA|150aa|down_7|NZ_CP022655.2_4610513_4610963_-	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|357aa|down_8|NZ_CP022655.2_4611032_4612103_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|277aa|down_9|NZ_CP022655.2_4612352_4613183_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	14	4715233-4715361	13	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AGCGATTTCTTCCCTCCGAGGTTCGACAGCGATCGGAGGAACC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|54aa|down_6|NZ_CP022655.2_4723270_4723432_-	NA|475aa|up_9|NZ_CP022655.2_4702212_4703637_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|279aa|up_8|NZ_CP022655.2_4703633_4704470_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|499aa|up_7|NZ_CP022655.2_4704524_4706021_-	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|352aa|up_6|NZ_CP022655.2_4706083_4707139_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|214aa|up_5|NZ_CP022655.2_4707292_4707934_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|319aa|up_4|NZ_CP022655.2_4708099_4709056_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|425aa|up_3|NZ_CP022655.2_4709465_4710740_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|516aa|up_2|NZ_CP022655.2_4710935_4712483_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|216aa|up_1|NZ_CP022655.2_4712565_4713213_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|348aa|up_0|NZ_CP022655.2_4713212_4714256_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|518aa|down_0|NZ_CP022655.2_4715422_4716976_-	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	NA|748aa|down_1|NZ_CP022655.2_4717095_4719339_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|232aa|down_2|NZ_CP022655.2_4719316_4720012_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|81aa|down_3|NZ_CP022655.2_4720016_4720259_-	pfam02700, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase	NA|300aa|down_4|NZ_CP022655.2_4720973_4721873_-	cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase	NA|432aa|down_5|NZ_CP022655.2_4721951_4723247_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|54aa|down_6|NZ_CP022655.2_4723270_4723432_-	NA	NA|428aa|down_7|NZ_CP022655.2_4723513_4724797_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|162aa|down_8|NZ_CP022655.2_4724712_4725198_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|190aa|down_9|NZ_CP022655.2_4726102_4726672_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	15	4749838-4749924	14	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CAGTCCGGAGCCGGGACAAAGAAGTCCG	28	1	1	4749866-4749896	NZ_CP022655.2_4749826-4749856	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|58aa|down_3|NZ_CP022655.2_4754092_4754266_+	NA|1122aa|up_9|NZ_CP022655.2_4733257_4736623_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|543aa|up_8|NZ_CP022655.2_4736609_4738238_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|341aa|up_7|NZ_CP022655.2_4738234_4739257_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|724aa|up_6|NZ_CP022655.2_4739544_4741716_-	pfam11962, Peptidase_G2, Peptidase_G2, IMC autoproteolytic cleavage domain	NA|559aa|up_5|NZ_CP022655.2_4741962_4743639_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|317aa|up_4|NZ_CP022655.2_4743749_4744700_-	COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	NA|161aa|up_3|NZ_CP022655.2_4744857_4745340_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|267aa|up_2|NZ_CP022655.2_4745436_4746237_-	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|265aa|up_1|NZ_CP022655.2_4746240_4747035_-	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|358aa|up_0|NZ_CP022655.2_4748675_4749749_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|449aa|down_0|NZ_CP022655.2_4750409_4751756_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|189aa|down_1|NZ_CP022655.2_4752572_4753139_-	COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]	NA|126aa|down_2|NZ_CP022655.2_4753700_4754078_+	pfam06103, DUF948, Bacterial protein of unknown function (DUF948)	NA|58aa|down_3|NZ_CP022655.2_4754092_4754266_+	NA	NA|351aa|down_4|NZ_CP022655.2_4754491_4755544_-	pfam13791, Sigma_reg_C, Sigma factor regulator C-terminal	NA|177aa|down_5|NZ_CP022655.2_4755503_4756034_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|234aa|down_6|NZ_CP022655.2_4756227_4756929_-	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component	NA|558aa|down_7|NZ_CP022655.2_4756925_4758599_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|298aa|down_8|NZ_CP022655.2_4758571_4759465_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|316aa|down_9|NZ_CP022655.2_4759457_4760405_-	pfam14478, DUF4430, Domain of unknown function (DUF4430)
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	16	4794115-4796775	15,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCACACGGGGAGCGAC,ATTTCAATCCACGCTCCCCACACGGGGAGCGAC,ATTTCAATCCACGCTCCCCACACGGGGAGCGAC	33,33,33	0	0	NA	NA	NA:NA:NA	39,39,38	39	TypeI-C,TypeI-U,TypeI-U?	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|72aa|up_9|NZ_CP022655.2_4779877_4780093_-,NA	NA|72aa|up_9|NZ_CP022655.2_4779877_4780093_-	NA	NA|557aa|up_8|NZ_CP022655.2_4780766_4782437_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|519aa|up_7|NZ_CP022655.2_4782621_4784178_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|630aa|up_6|NZ_CP022655.2_4784177_4786067_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|564aa|up_5|NZ_CP022655.2_4786175_4787867_-	cd13582, PBP2_AlgQ_like_3, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|296aa|up_4|NZ_CP022655.2_4787951_4788839_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|323aa|up_3|NZ_CP022655.2_4788857_4789826_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|205aa|up_2|NZ_CP022655.2_4790125_4790740_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|804aa|up_1|NZ_CP022655.2_4790788_4793200_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|208aa|up_0|NZ_CP022655.2_4793416_4794040_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	cas2|97aa|down_0|NZ_CP022655.2_4796968_4797259_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NZ_CP022655.2_4797276_4798308_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|227aa|down_2|NZ_CP022655.2_4798304_4798985_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|290aa|down_3|NZ_CP022655.2_4798971_4799841_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|638aa|down_4|NZ_CP022655.2_4799904_4801818_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_5|NZ_CP022655.2_4801821_4802541_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|836aa|down_6|NZ_CP022655.2_4802558_4805066_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|360aa|down_7|NZ_CP022655.2_4809665_4810745_-	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|234aa|down_8|NZ_CP022655.2_4812572_4813274_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|482aa|down_9|NZ_CP022655.2_4813482_4814928_+	COG0281, SfcA, Malic enzyme [Energy production and conversion]
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	17	4805452-4809465	2,16,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCATACGGGGAGCGAC,GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT,GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT	33,33,33	0	0	NA	NA	NA:NA:NA	54,58,59	59	TypeI-C,TypeI-U,TypeI-U?	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|205aa|up_9|NZ_CP022655.2_4790125_4790740_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|804aa|up_8|NZ_CP022655.2_4790788_4793200_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|208aa|up_7|NZ_CP022655.2_4793416_4794040_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	cas2|97aa|up_6|NZ_CP022655.2_4796968_4797259_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|up_5|NZ_CP022655.2_4797276_4798308_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|227aa|up_4|NZ_CP022655.2_4798304_4798985_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|290aa|up_3|NZ_CP022655.2_4798971_4799841_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|638aa|up_2|NZ_CP022655.2_4799904_4801818_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|up_1|NZ_CP022655.2_4801821_4802541_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|836aa|up_0|NZ_CP022655.2_4802558_4805066_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|360aa|down_0|NZ_CP022655.2_4809665_4810745_-	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|234aa|down_1|NZ_CP022655.2_4812572_4813274_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|482aa|down_2|NZ_CP022655.2_4813482_4814928_+	COG0281, SfcA, Malic enzyme [Energy production and conversion]	NA|433aa|down_3|NZ_CP022655.2_4814984_4816283_+	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|422aa|down_4|NZ_CP022655.2_4816358_4817624_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|272aa|down_5|NZ_CP022655.2_4817620_4818436_-	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|290aa|down_6|NZ_CP022655.2_4818422_4819292_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|1684aa|down_7|NZ_CP022655.2_4819401_4824453_-	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|1066aa|down_8|NZ_CP022655.2_4824478_4827676_-	cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)	NA|421aa|down_9|NZ_CP022655.2_4827665_4828928_-	PRK02186, PRK02186, argininosuccinate lyase; Provisional
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	18	4925730-4925850	17	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TCTAATGCGAGTTTGCCTGTTTTACCT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|271aa|up_4|NZ_CP022655.2_4919314_4920127_-,NA|180aa|up_3|NZ_CP022655.2_4920608_4921148_-,NA|69aa|down_3|NZ_CP022655.2_4930025_4930232_-,NA|45aa|down_5|NZ_CP022655.2_4932049_4932184_-	NA|139aa|up_9|NZ_CP022655.2_4911898_4912315_+	pfam11193, DUF2812, Protein of unknown function (DUF2812)	NA|164aa|up_8|NZ_CP022655.2_4912325_4912817_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|260aa|up_7|NZ_CP022655.2_4912813_4913593_-	pfam07827, KNTase_C, KNTase C-terminal domain	NA|1637aa|up_6|NZ_CP022655.2_4913859_4918770_+	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|147aa|up_5|NZ_CP022655.2_4918877_4919318_-	PRK06756, PRK06756, flavodoxin; Provisional	NA|271aa|up_4|NZ_CP022655.2_4919314_4920127_-	NA	NA|180aa|up_3|NZ_CP022655.2_4920608_4921148_-	NA	NA|437aa|up_2|NZ_CP022655.2_4921484_4922795_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|266aa|up_1|NZ_CP022655.2_4923971_4924769_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|223aa|up_0|NZ_CP022655.2_4924816_4925485_-	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor	NA|916aa|down_0|NZ_CP022655.2_4925963_4928711_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|60aa|down_1|NZ_CP022655.2_4928714_4928894_-	pfam13790, SR1P, SR1 protein	NA|350aa|down_2|NZ_CP022655.2_4928923_4929973_-	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|69aa|down_3|NZ_CP022655.2_4930025_4930232_-	NA	NA|327aa|down_4|NZ_CP022655.2_4930314_4931295_-	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|45aa|down_5|NZ_CP022655.2_4932049_4932184_-	NA	NA|49aa|down_6|NZ_CP022655.2_4932368_4932515_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|325aa|down_7|NZ_CP022655.2_4932676_4933651_-	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|388aa|down_8|NZ_CP022655.2_4933898_4935062_+	PRK13609, PRK13609, diacylglycerol glucosyltransferase; Provisional	NA|399aa|down_9|NZ_CP022655.2_4935103_4936300_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	19	5100450-5100524	18	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTATCGGACATACGTTCCGCTATTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|127aa|up_7|NZ_CP022655.2_5093227_5093608_-,NA|67aa|down_5|NZ_CP022655.2_5107172_5107373_-,NA|324aa|down_6|NZ_CP022655.2_5107697_5108669_-,NA|48aa|down_7|NZ_CP022655.2_5108764_5108908_+	NA|71aa|up_9|NZ_CP022655.2_5092147_5092360_-	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated	NA|253aa|up_8|NZ_CP022655.2_5092458_5093217_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|127aa|up_7|NZ_CP022655.2_5093227_5093608_-	NA	NA|74aa|up_6|NZ_CP022655.2_5093600_5093822_-	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|382aa|up_5|NZ_CP022655.2_5094009_5095155_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|210aa|up_4|NZ_CP022655.2_5095172_5095802_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|416aa|up_3|NZ_CP022655.2_5096136_5097384_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|201aa|up_2|NZ_CP022655.2_5097627_5098230_-	pfam04260, DUF436, Protein of unknown function (DUF436)	NA|199aa|up_1|NZ_CP022655.2_5098621_5099218_-	cd16344, LMWPAP, low molecular weight protein arginine phosphatase	NA|189aa|up_0|NZ_CP022655.2_5099269_5099836_-	pfam02659, Mntp, Putative manganese efflux pump	NA|373aa|down_0|NZ_CP022655.2_5100716_5101835_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|259aa|down_1|NZ_CP022655.2_5102159_5102936_-	pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R)	NA|352aa|down_2|NZ_CP022655.2_5103331_5104387_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|358aa|down_3|NZ_CP022655.2_5104545_5105619_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|367aa|down_4|NZ_CP022655.2_5105837_5106938_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|67aa|down_5|NZ_CP022655.2_5107172_5107373_-	NA	NA|324aa|down_6|NZ_CP022655.2_5107697_5108669_-	NA	NA|48aa|down_7|NZ_CP022655.2_5108764_5108908_+	NA	NA|428aa|down_8|NZ_CP022655.2_5109310_5110594_-	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains	NA|421aa|down_9|NZ_CP022655.2_5110736_5111999_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	20	5121329-5121403	19	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GAATAACGGATCGTATGTCCGATAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|54aa|up_8|NZ_CP022655.2_5112194_5112356_-,NA|89aa|down_6|NZ_CP022655.2_5129657_5129924_+	NA|421aa|up_9|NZ_CP022655.2_5110736_5111999_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|54aa|up_8|NZ_CP022655.2_5112194_5112356_-	NA	NA|157aa|up_7|NZ_CP022655.2_5112440_5112911_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|447aa|up_6|NZ_CP022655.2_5113289_5114630_+	PRK07228, PRK07228, 5'-deoxyadenosine deaminase	NA|104aa|up_5|NZ_CP022655.2_5114867_5115179_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|142aa|up_4|NZ_CP022655.2_5115230_5115656_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|279aa|up_3|NZ_CP022655.2_5115774_5116611_-	cd19157, AKR_AKR5G1-3, AKR5G family of aldo-keto reductase (AKR)	NA|444aa|up_2|NZ_CP022655.2_5116858_5118190_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|406aa|up_1|NZ_CP022655.2_5118345_5119563_-	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|314aa|up_0|NZ_CP022655.2_5119600_5120542_-	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins	NA|279aa|down_0|NZ_CP022655.2_5121829_5122666_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|293aa|down_1|NZ_CP022655.2_5122669_5123548_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|499aa|down_2|NZ_CP022655.2_5123954_5125451_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|637aa|down_3|NZ_CP022655.2_5125447_5127358_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|358aa|down_4|NZ_CP022655.2_5127354_5128428_-	cd19974, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|291aa|down_5|NZ_CP022655.2_5128677_5129550_-	COG1801, COG1801, Uncharacterized conserved protein [Function unknown]	NA|89aa|down_6|NZ_CP022655.2_5129657_5129924_+	NA	NA|241aa|down_7|NZ_CP022655.2_5129972_5130695_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|297aa|down_8|NZ_CP022655.2_5130745_5131636_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|476aa|down_9|NZ_CP022655.2_5131694_5133122_-	TIGR03023, Sugar_transferase
GCF_002243345.2_ASM224334v3	NZ_CP022655	Paenibacillus sp. RUD330 chromosome, complete genome	21	5229492-5229616	20	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	GTCGGCGTCGGCGTGCCGCTTGG	23	0	0	NA	NA	NA	2	2	Unclear	cas3,csa3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|152aa|down_2|NZ_CP022655.2_5233958_5234414_+,NA|125aa|down_3|NZ_CP022655.2_5235548_5235923_-,NA|64aa|down_5|NZ_CP022655.2_5237123_5237315_+,NA|110aa|down_9|NZ_CP022655.2_5241981_5242311_+	NA|253aa|up_9|NZ_CP022655.2_5211499_5212258_-	COG3910, COG3910, Predicted ATPase [General function prediction only]	NA|428aa|up_8|NZ_CP022655.2_5212301_5213585_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	cas3|1614aa|up_7|NZ_CP022655.2_5213920_5218762_+	COG1201, Lhr, Lhr-like helicases [General function prediction only]	NA|262aa|up_6|NZ_CP022655.2_5218888_5219674_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|714aa|up_5|NZ_CP022655.2_5219912_5222054_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|290aa|up_4|NZ_CP022655.2_5222070_5222940_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|327aa|up_3|NZ_CP022655.2_5222984_5223965_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|536aa|up_2|NZ_CP022655.2_5224045_5225653_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|288aa|up_1|NZ_CP022655.2_5225725_5226589_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|519aa|up_0|NZ_CP022655.2_5226783_5228340_-	cd16031, G6S_like, unchracterized sulfatase homologous to glucosamine (N-acetyl)-6-sulfatase(G6S, GNS)	NA|296aa|down_0|NZ_CP022655.2_5231717_5232605_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|258aa|down_1|NZ_CP022655.2_5232766_5233540_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|152aa|down_2|NZ_CP022655.2_5233958_5234414_+	NA	NA|125aa|down_3|NZ_CP022655.2_5235548_5235923_-	NA	NA|274aa|down_4|NZ_CP022655.2_5236048_5236870_+	TIGR02172, Fb_sc_TIGR02172, Fibrobacter succinogenes paralogous family TIGR02172	NA|64aa|down_5|NZ_CP022655.2_5237123_5237315_+	NA	NA|628aa|down_6|NZ_CP022655.2_5237589_5239473_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|596aa|down_7|NZ_CP022655.2_5239469_5241257_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|176aa|down_8|NZ_CP022655.2_5241448_5241976_+	pfam07301, DUF1453, Protein of unknown function (DUF1453)	NA|110aa|down_9|NZ_CP022655.2_5241981_5242311_+	NA
