assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002242175.1_ASM224217v1	NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	1	391118-391307	1	CRISPRCasFinder	no		DinG,csa3,DEDDh,WYL,cas3,RT	Orphan	GCAGACAGCAGACAGCAGACAGCAGACAGCAG	32	1	4	391252-391275|391252-391275|391252-391275|391252-391275	NZ_CP021641.1_391287-391310|NZ_CP021641.1_391294-391317|NZ_CP021641.1_391301-391324|NZ_CP021641.1_391308-391331	NA	2	2	Orphan	DinG,csa3,DEDDh,WYL,cas3,RT	NA|167aa|up_6|NZ_CP021641.1_381771_382272_+,NA|76aa|up_0|NZ_CP021641.1_390446_390674_-,NA	NA|181aa|up_9|NZ_CP021641.1_379906_380449_+	pfam07291, MauE, Methylamine utilisation protein MauE	NA|214aa|up_8|NZ_CP021641.1_380458_381100_+	TIGR02661, Methylamine_utilization_protein_MauD, methylamine dehydrogenase accessory protein MauD	NA|183aa|up_7|NZ_CP021641.1_381083_381632_+	pfam02975, Me-amine-dh_L, Methylamine dehydrogenase, L chain	NA|167aa|up_6|NZ_CP021641.1_381771_382272_+	NA	NA|317aa|up_5|NZ_CP021641.1_382389_383340_+	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|268aa|up_4|NZ_CP021641.1_383455_384259_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|359aa|up_3|NZ_CP021641.1_384290_385367_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|698aa|up_2|NZ_CP021641.1_385652_387746_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|692aa|up_1|NZ_CP021641.1_388045_390121_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|76aa|up_0|NZ_CP021641.1_390446_390674_-	NA	NA|491aa|down_0|NZ_CP021641.1_391459_392932_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1578aa|down_1|NZ_CP021641.1_392965_397699_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|248aa|down_2|NZ_CP021641.1_397919_398663_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|324aa|down_3|NZ_CP021641.1_398677_399649_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|411aa|down_4|NZ_CP021641.1_399894_401127_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|512aa|down_5|NZ_CP021641.1_401158_402694_+	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|298aa|down_6|NZ_CP021641.1_402954_403848_-	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|259aa|down_7|NZ_CP021641.1_404595_405372_-	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	NA|683aa|down_8|NZ_CP021641.1_405368_407417_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|528aa|down_9|NZ_CP021641.1_407776_409360_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional
GCF_002242175.1_ASM224217v1	NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	2	955246-955933	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		DinG,csa3,DEDDh,WYL,cas3,RT	Orphan	GTTTGCTGCCGAGTAGGCAGCTTAGAAA,GTTTGCTGCCGAGTAGGCAGCTTAGAAA,GTTTGCTGCCGAGTAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,11,10	11	Orphan	DinG,csa3,DEDDh,WYL,cas3,RT	NA,NA	NA|209aa|up_9|NZ_CP021641.1_945816_946443_+	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase	NA|217aa|up_8|NZ_CP021641.1_946596_947247_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|304aa|up_7|NZ_CP021641.1_947326_948238_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|378aa|up_6|NZ_CP021641.1_948227_949361_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|107aa|up_5|NZ_CP021641.1_949791_950112_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|123aa|up_4|NZ_CP021641.1_950122_950491_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|231aa|up_3|NZ_CP021641.1_950507_951200_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|447aa|up_2|NZ_CP021641.1_951196_952537_-	PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|389aa|up_1|NZ_CP021641.1_952543_953710_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|399aa|up_0|NZ_CP021641.1_953706_954903_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|415aa|down_0|NZ_CP021641.1_956068_957313_-	pfam03594, BenE, Benzoate membrane transport protein	NA|397aa|down_1|NZ_CP021641.1_957756_958947_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|879aa|down_2|NZ_CP021641.1_959302_961939_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|371aa|down_3|NZ_CP021641.1_962157_963270_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|732aa|down_4|NZ_CP021641.1_963282_965478_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|393aa|down_5|NZ_CP021641.1_965840_967019_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|653aa|down_6|NZ_CP021641.1_967012_968971_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|467aa|down_7|NZ_CP021641.1_969003_970404_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|255aa|down_8|NZ_CP021641.1_970356_971121_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|615aa|down_9|NZ_CP021641.1_971252_973097_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_002242175.1_ASM224217v1	NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	3	1380848-1380918	3	CRISPRCasFinder	no		DinG,csa3,DEDDh,WYL,cas3,RT	Orphan	TCCCAGACAGTGTCTGGGAAATT	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,WYL,cas3,RT	NA|216aa|up_9|NZ_CP021641.1_1370441_1371089_-,NA|454aa|down_0|NZ_CP021641.1_1381736_1383098_-,NA|69aa|down_3|NZ_CP021641.1_1386794_1387001_+	NA|216aa|up_9|NZ_CP021641.1_1370441_1371089_-	NA	NA|454aa|up_8|NZ_CP021641.1_1371225_1372587_-	pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus	NA|161aa|up_7|NZ_CP021641.1_1372885_1373368_-	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|335aa|up_6|NZ_CP021641.1_1373464_1374469_-	pfam04143, Sulf_transp, Sulphur transport	NA|412aa|up_5|NZ_CP021641.1_1374505_1375741_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|118aa|up_4|NZ_CP021641.1_1375803_1376157_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|109aa|up_3|NZ_CP021641.1_1376321_1376648_-	pfam08770, SoxZ, Sulphur oxidation protein SoxZ	NA|168aa|up_2|NZ_CP021641.1_1376661_1377165_-	PRK07474, PRK07474, sulfur oxidation protein SoxY; Provisional	NA|443aa|up_1|NZ_CP021641.1_1377151_1378480_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|70aa|up_0|NZ_CP021641.1_1378864_1379074_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|454aa|down_0|NZ_CP021641.1_1381736_1383098_-	NA	NA|384aa|down_1|NZ_CP021641.1_1383100_1384252_-	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain	NA|473aa|down_2|NZ_CP021641.1_1384248_1385667_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|69aa|down_3|NZ_CP021641.1_1386794_1387001_+	NA	NA|516aa|down_4|NZ_CP021641.1_1387138_1388686_+	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA|411aa|down_5|NZ_CP021641.1_1388624_1389857_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|572aa|down_6|NZ_CP021641.1_1389846_1391562_-	TIGR02986, restriction_endonuclease, type II restriction endonuclease, Alw26I/Eco31I/Esp3I family	NA|109aa|down_7|NZ_CP021641.1_1391571_1391898_-	pfam01381, HTH_3, Helix-turn-helix	NA|259aa|down_8|NZ_CP021641.1_1392833_1393610_+	COG5419, COG5419, Uncharacterized conserved protein [Function unknown]	NA|246aa|down_9|NZ_CP021641.1_1394013_1394751_+	PRK13874, PRK13874, conjugal transfer protein TrbJ; Provisional
GCF_002242175.1_ASM224217v1	NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	4	2035687-2035787	4	CRISPRCasFinder	no		DinG,csa3,DEDDh,WYL,cas3,RT	Orphan	AAGCCGAAGGCGCAGCGTGGGGGC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,WYL,cas3,RT	NA,NA|153aa|down_6|NZ_CP021641.1_2045399_2045858_+	NA|348aa|up_9|NZ_CP021641.1_2026095_2027139_+	TIGR01532, D-erythrose-4-phosphate_dehydrogenase_E4PDH	NA|466aa|up_8|NZ_CP021641.1_2027189_2028587_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|386aa|up_7|NZ_CP021641.1_2028739_2029897_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|263aa|up_6|NZ_CP021641.1_2029901_2030690_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|142aa|up_5|NZ_CP021641.1_2030785_2031211_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|113aa|up_4|NZ_CP021641.1_2031466_2031805_+	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion]	NA|406aa|up_3|NZ_CP021641.1_2032021_2033239_-	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|225aa|up_2|NZ_CP021641.1_2033295_2033970_-	sd00045, ANK, ankyrin repeats	NA|318aa|up_1|NZ_CP021641.1_2034072_2035026_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|106aa|up_0|NZ_CP021641.1_2035167_2035485_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|821aa|down_0|NZ_CP021641.1_2035867_2038330_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|147aa|down_1|NZ_CP021641.1_2038491_2038932_-	pfam11071, Nuc_deoxyri_tr3, Nucleoside 2-deoxyribosyltransferase YtoQ	NA|400aa|down_2|NZ_CP021641.1_2039226_2040426_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|356aa|down_3|NZ_CP021641.1_2040614_2041682_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|533aa|down_4|NZ_CP021641.1_2042423_2044022_+	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_5|NZ_CP021641.1_2044178_2045381_+	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|153aa|down_6|NZ_CP021641.1_2045399_2045858_+	NA	NA|510aa|down_7|NZ_CP021641.1_2045975_2047505_-	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase	NA|776aa|down_8|NZ_CP021641.1_2047854_2050182_-	pfam07514, TraI_2, Putative helicase	NA|180aa|down_9|NZ_CP021641.1_2050341_2050881_-	pfam14011, ESX-1_EspG, EspG family
