The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	4078346	1110476	1121377	4078346		Burkholderia_virus(33.33%)	6	NA	NA
WP_094195981.1|1110476_1113032_-	hypothetical protein	NA	A0A193GZ61	Enterobacter_phage	43.0	2.0e-183
WP_094195982.1|1113034_1115554_-	lytic transglycosylase domain-containing protein	NA	Q6J1R1	Burkholderia_virus	30.0	4.2e-45
WP_159063898.1|1115550_1117974_-	hypothetical protein	NA	A0A2H4JE92	uncultured_Caudovirales_phage	25.1	1.1e-29
WP_094195984.1|1117978_1118503_-	hypothetical protein	NA	Q6J1R3	Burkholderia_virus	49.2	2.2e-20
WP_094195985.1|1118553_1119387_+	hypothetical protein	NA	R9TP69	Rhizobium_phage	23.9	2.5e-10
WP_094195986.1|1120387_1121377_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.3	5.9e-19
>prophage 2
NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	4078346	1485032	1540866	4078346	tail,head,integrase	Pseudomonas_phage(50.0%)	64	1479935:1479950	1522898:1522913
1479935:1479950	attL	CCCGGTGGGCCTCGGC	NA	NA	NA	NA
WP_094196274.1|1485032_1485350_-	STAS-like domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	44.0	6.0e-10
WP_094196275.1|1485333_1486227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094196276.1|1486671_1487058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159063904.1|1487331_1487844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196280.1|1488163_1488475_+	DNA-binding protein	NA	E5E3P2	Burkholderia_phage	45.3	8.8e-14
WP_094196281.1|1488477_1488888_+	hypothetical protein	NA	A0A0H5AUD0	Pseudomonas_phage	54.9	2.3e-22
WP_094198307.1|1489108_1489468_+	recombinase	NA	A0A222YXV2	Escherichia_phage	45.6	6.6e-13
WP_094196282.1|1489464_1490328_+	hypothetical protein	NA	I6NW17	Burkholderia_virus	35.9	3.7e-25
WP_094196283.1|1490314_1490971_+	hypothetical protein	NA	Q3HQZ7	Burkholderia_phage	54.0	1.8e-61
WP_094196284.1|1490967_1491303_+	DUF1064 domain-containing protein	NA	Q6JIF9	Burkholderia_virus	49.6	1.3e-18
WP_094196285.1|1491452_1491812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196286.1|1491808_1492117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196288.1|1492463_1493090_+	hypothetical protein	NA	A0A059VJU8	Pseudomonas_phage	66.2	1.9e-76
WP_094196289.1|1493120_1493594_+	DUF2280 domain-containing protein	NA	A0A125RNL6	Pseudomonas_phage	58.1	9.6e-36
WP_094196290.1|1493583_1495071_+	DNA-packaging protein	NA	G0ZND4	Cronobacter_phage	83.3	1.7e-240
WP_094196291.1|1495292_1496663_+	DUF1073 domain-containing protein	NA	H6WRT0	Salmonella_phage	63.1	2.6e-158
WP_094196292.1|1496625_1497555_+|head	phage head morphogenesis protein	head	H2BD79	Pseudomonas_phage	58.1	7.3e-96
WP_094198308.1|1497637_1498927_+	hypothetical protein	NA	G0ZND7	Cronobacter_phage	70.2	6.2e-162
WP_094196293.1|1498930_1499374_+	hypothetical protein	NA	A0A125RNM2	Pseudomonas_phage	72.6	3.6e-53
WP_094196294.1|1499386_1500478_+	hypothetical protein	NA	A0A125RNM3	Pseudomonas_phage	75.5	1.2e-158
WP_094196295.1|1500488_1500857_+	hypothetical protein	NA	H2BD83	Pseudomonas_phage	69.7	1.1e-05
WP_094196296.1|1500976_1501468_+	DUF1643 domain-containing protein	NA	A0A0U1W068	Pseudomonas_phage	49.0	5.8e-36
WP_094196297.1|1501527_1501929_+	hypothetical protein	NA	A0A125RNM6	Pseudomonas_phage	70.2	8.9e-51
WP_094196298.1|1501928_1502246_+	hypothetical protein	NA	J7I4I8	Pseudomonas_phage	67.0	4.9e-36
WP_094196299.1|1502245_1502665_+	hypothetical protein	NA	H2BD87	Pseudomonas_phage	55.2	4.1e-30
WP_094196300.1|1502642_1503017_+	hypothetical protein	NA	J7I407	Pseudomonas_phage	41.5	1.3e-19
WP_094196301.1|1503026_1503770_+	hypothetical protein	NA	A0A125RNN0	Pseudomonas_phage	61.2	2.3e-68
WP_094198309.1|1503769_1504363_+	glycoprotein	NA	A0A125RNN1	Pseudomonas_phage	53.7	6.8e-55
WP_094196302.1|1505230_1505755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196303.1|1505809_1508755_+	tape measure protein	NA	H2BD91	Pseudomonas_phage	32.5	1.0e-74
WP_159063905.1|1509099_1509249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196305.1|1509235_1509742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196306.1|1509738_1510077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196307.1|1510073_1512962_+	hypothetical protein	NA	A0A0D4DBG7	Acinetobacter_phage	31.7	1.4e-129
WP_094196308.1|1513023_1514949_+	SGNH/GDSL hydrolase family protein	NA	I6P9N4	Staphylococcus_phage	43.6	3.2e-37
WP_159063906.1|1515027_1515282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196310.1|1515265_1515724_+	lysozyme	NA	A0A0U4JP67	Pseudomonas_phage	62.2	2.7e-43
WP_094196311.1|1515702_1516185_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_094196312.1|1516210_1516831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159063907.1|1517482_1518154_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	42.7	1.3e-41
WP_035272444.1|1518165_1518498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094196315.1|1518598_1519582_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	40.4	3.5e-64
WP_094196316.1|1520603_1520870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196317.1|1520906_1521605_-	S24 family peptidase	NA	A0A1I9KG86	Aeromonas_phage	45.3	1.2e-29
WP_094196318.1|1521678_1521870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196319.1|1522306_1523104_+	hypothetical protein	NA	NA	NA	NA	NA
1522898:1522913	attR	GCCGAGGCCCACCGGG	NA	NA	NA	NA
WP_094196320.1|1523087_1523795_+	hypothetical protein	NA	F8TUP9	EBPR_podovirus	39.5	1.6e-18
WP_094196321.1|1523798_1524122_+	DUF1064 domain-containing protein	NA	NA	NA	NA	NA
WP_086061031.1|1524135_1524516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196322.1|1524512_1524761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196323.1|1524931_1525351_+	hypothetical protein	NA	A0A0P0IRA6	Acinetobacter_phage	40.9	3.5e-21
WP_094196324.1|1525419_1526343_+	hypothetical protein	NA	A0A059VG08	Pseudomonas_phage	62.5	5.0e-113
WP_094196325.1|1526354_1526828_+	hypothetical protein	NA	A0A059VF34	Pseudomonas_phage	38.6	4.8e-19
WP_159063908.1|1526896_1527079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159063909.1|1527285_1529100_+	hypothetical protein	NA	A0A0H5AWE4	Pseudomonas_phage	46.9	4.5e-09
WP_094196327.1|1529096_1529438_+|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	44.6	2.2e-21
WP_094196328.1|1529434_1530178_+|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	53.3	1.1e-67
WP_094198312.1|1530353_1531136_+	C40 family peptidase	NA	Q3HQU3	Burkholderia_phage	43.3	1.4e-55
WP_094198313.1|1531150_1531738_+|tail	tail assembly protein	tail	Q6JIL3	Burkholderia_virus	55.1	3.2e-49
WP_094196329.1|1531737_1536690_+	DUF1983 domain-containing protein	NA	A4JX16	Burkholderia_virus	38.3	1.1e-20
WP_159063910.1|1537097_1537781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196332.1|1537840_1538041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094196333.1|1538027_1539515_+	hypothetical protein	NA	A0A1S5R1J5	Pseudomonas_phage	29.1	2.2e-25
WP_094196334.1|1539630_1540866_+|tail	phage tail protein	tail	A0A059VJZ6	Pseudomonas_phage	27.8	3.5e-21
>prophage 3
NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	4078346	2143626	2205395	4078346	protease,integrase,plate	uncultured_Caudovirales_phage(28.57%)	55	2140398:2140413	2212625:2212640
2140398:2140413	attL	GCACTTGCGGGTCCTG	NA	NA	NA	NA
WP_003799839.1|2143626_2145024_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_094196773.1|2145031_2145673_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_094196774.1|2145675_2146080_-	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
WP_159063930.1|2146109_2146781_-	DUF3540 domain-containing protein	NA	NA	NA	NA	NA
WP_094196776.1|2146794_2147751_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_094196777.1|2147747_2150249_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_094196778.1|2150262_2153148_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
WP_094198354.1|2153151_2155833_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	30.5	1.5e-85
WP_094196779.1|2155819_2156848_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_094196780.1|2156811_2158530_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_003799822.1|2158570_2158990_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_003799821.1|2159002_2159488_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_094196781.1|2159631_2161119_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_003799817.1|2161121_2161625_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_094196782.1|2161663_2163091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094196783.1|2163795_2164557_-	glucose 1-dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	34.1	2.9e-18
WP_094198355.1|2164780_2165284_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_159063931.1|2166092_2168204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094196785.1|2168215_2168665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094198356.1|2168994_2169396_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_094196786.1|2169535_2170660_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_094196787.1|2170850_2171216_+	ligand-binding protein SH3	NA	NA	NA	NA	NA
WP_094196788.1|2171373_2171958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094196789.1|2172174_2172744_+	cytochrome b	NA	NA	NA	NA	NA
WP_094196790.1|2172740_2173304_+	YceI family protein	NA	NA	NA	NA	NA
WP_094196791.1|2173351_2173924_+	YceI family protein	NA	NA	NA	NA	NA
WP_094196792.1|2173955_2174300_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	55.9	4.2e-25
WP_094196793.1|2174422_2175121_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_094196794.1|2175131_2175923_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_094196795.1|2176086_2176926_+	DUF2789 family protein	NA	NA	NA	NA	NA
WP_094196796.1|2177094_2177991_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_094196797.1|2178338_2179109_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_094198357.1|2179126_2180164_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_094196798.1|2180312_2181122_+	deoxynucleotide monophosphate kinase	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	35.8	2.6e-09
WP_094196799.1|2181210_2182218_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_094196800.1|2182411_2183338_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_094196801.1|2183312_2184209_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_094196802.1|2184267_2185395_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_094196803.1|2185391_2186540_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_094196804.1|2186689_2187043_-	RnfH family protein	NA	NA	NA	NA	NA
WP_042480744.1|2187035_2187470_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_042480746.1|2187529_2187994_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	42.4	2.8e-24
WP_094196805.1|2188027_2189338_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_094196806.1|2190789_2193156_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.9	4.8e-176
WP_094196807.1|2193325_2194159_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_094198358.1|2194302_2195637_-	amidase	NA	NA	NA	NA	NA
WP_094196808.1|2196007_2196790_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_094196809.1|2196800_2197406_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	42.8	2.1e-27
WP_094196810.1|2197402_2198665_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_094196811.1|2198661_2199450_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003799758.1|2199453_2199909_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_094196812.1|2199921_2201055_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_094196813.1|2201061_2201616_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_094196814.1|2201677_2204020_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_094196815.1|2204072_2205395_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
2212625:2212640	attR	CAGGACCCGCAAGTGC	NA	NA	NA	NA
>prophage 4
NZ_CP021641	Alcaligenes faecalis strain JQ135 chromosome, complete genome	4078346	2298906	2307565	4078346	tRNA	uncultured_Mediterranean_phage(28.57%)	10	NA	NA
WP_094196890.1|2298906_2299731_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	1.2e-33
WP_094196891.1|2299727_2300468_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.0	7.1e-70
WP_094196892.1|2300582_2301224_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_094196893.1|2301227_2302286_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.6	6.6e-93
WP_094196894.1|2302474_2303767_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	38.0	1.6e-72
WP_094196895.1|2303887_2304268_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.0	4.1e-13
WP_094196896.1|2304332_2304596_-	DUF2024 family protein	NA	NA	NA	NA	NA
WP_094196897.1|2304620_2305151_-	redoxin family protein	NA	NA	NA	NA	NA
WP_094196898.1|2305361_2305958_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	37.4	9.3e-20
WP_094196899.1|2305966_2307565_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.8	9.4e-59
