The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	27282	78584	4110338	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43662_44613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64066_64384_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	107426	175250	4110338	tRNA,transposase	Bacillus_phage(22.22%)	58	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120810.1|136093_136237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815155.1|136525_138034_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138780_142743_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142795_143578_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143665_144889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144872_145805_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145810_146623_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_033446330.1|147935_148859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149025_149808_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150574_151555_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151551_152280_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152304_152736_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152837_153713_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929651.1|153763_154984_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929652.1|155067_155529_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155634_157032_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157028_157706_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157761_159072_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159083_159782_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159945_160722_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160887_161910_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162138_162774_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929658.1|162770_164333_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169125_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174133_174313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174299_175250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	178632	237311	4110338	protease,tRNA,transposase	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189528_189975_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193067_194300_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194398_195349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195394_196087_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196083_196977_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197371_198472_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198553_198928_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198987_201852_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201996_202737_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202806_204018_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204046_205015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|205628_206579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207783_208107_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|208211_209261_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|209257_210082_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210082_210379_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210404_210680_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210736_211381_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211380_212067_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212196_213048_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213098_213824_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213855_215205_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215316_216249_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216706_219502_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220095_223038_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223109_223829_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223867_224416_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224570_225470_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225494_226445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226662_227358_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227374_228787_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228899_230330_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230371_232285_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232603_233170_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233260_234262_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234376_235327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235413_236364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236360_237311_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	251725	304061	4110338	protease,tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_003814337.1|251725_252667_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252663_254553_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254639_255278_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255420_256806_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256736_257273_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257424_258816_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258832_259813_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259948_260932_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|260996_261896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262002_263757_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263764_264889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264902_265883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266613_267564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268123_268669_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268752_270372_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270387_271542_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271555_271681_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271677_273429_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273425_275105_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|275140_275716_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|276858_277137_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278180_279131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279117_279333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279408_279570_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279577_279718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280236_280686_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280695_281307_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|281465_282320_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282339_283722_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283786_284428_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284567_285026_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285050_285827_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285880_287017_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287013_287964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|288062_288689_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|288711_289638_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|289646_291233_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|291229_292234_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|292433_293294_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|293325_294327_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|294397_295207_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|295284_297144_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|297272_298475_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|298588_299470_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|300972_301533_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|301592_302543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299516.1|302529_302688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111735998.1|302734_303022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|303110_304061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	355958	415426	4110338	tRNA,transposase	Streptococcus_phage(50.0%)	58	NA	NA
WP_010929969.1|355958_356909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|357020_357743_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|357841_358585_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|358815_360324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|360443_361175_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|361219_362680_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|362704_363184_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|363202_364213_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|364427_365168_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023994940.1|365359_366385_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|366344_367295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|368343_368982_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_076879616.1|369018_370413_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|370784_371573_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_003817729.1|371677_372385_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|372498_373953_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|373955_375494_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|375496_375805_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|376035_377079_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|377167_378052_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|378038_378602_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|378615_380568_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|380564_381701_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|381726_382782_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|382792_384286_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|384498_385074_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|385123_385870_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|385869_386772_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|387033_387822_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|387962_388454_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|388450_389194_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003815188.1|389190_389793_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
WP_100208326.1|389792_390269_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|390393_391332_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|391328_391901_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|391897_392848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|392946_393897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|393883_394051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|394033_394951_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394947_395196_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|395192_396398_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|396470_397466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397488_398709_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398705_399350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|401080_401890_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|402107_403148_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|403116_403260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|403246_404230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|404156_404858_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404906_405677_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|405673_406915_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|407019_408726_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408722_409619_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409659_411249_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|411298_412291_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|412359_412959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|413419_414397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|414475_415426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	423237	478211	4110338	transposase	Bradyrhizobium_phage(20.0%)	45	NA	NA
WP_022997984.1|423237_424215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|424410_425616_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|425612_427124_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|427139_428453_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|428643_428823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|429232_429967_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|432411_433362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|433493_433892_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|434302_434773_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|434861_435206_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|435305_436706_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|438494_439013_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|439123_439879_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|440074_441307_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|441299_442085_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|442151_443123_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|443133_444111_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|444236_445409_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|445435_446464_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|446529_447723_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|449504_450455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|450553_451504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|451602_452508_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|452683_452887_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|453397_453838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029443819.1|453867_454503_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929798.1|454612_456253_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|456249_457713_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|457743_461130_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|461271_461676_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|461819_462806_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|462792_463074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|463819_465052_-	dehydratase	NA	NA	NA	NA	NA
WP_077274093.1|465051_465525_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|465677_466640_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|466617_467871_-	CoA transferase	NA	NA	NA	NA	NA
WP_023995938.1|467814_468006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|467992_468943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003821340.1|468939_469602_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_010929831.1|469609_470569_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_010929830.1|470725_471397_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_023853155.1|471399_472365_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247670.1|472872_476001_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_010929827.1|476076_477144_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|477260_478211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	592509	653700	4110338	protease,transposase	uncultured_Mediterranean_phage(40.0%)	57	NA	NA
WP_005013747.1|592509_593460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|593935_594826_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|594822_595644_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|595843_596335_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|596353_597427_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|597473_598577_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|598652_599273_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|599293_599803_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|599857_600109_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|600172_601306_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|601313_601700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|601696_604216_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|604644_604983_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|604979_605486_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|605547_606348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|606458_607400_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|607493_609029_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|610708_612559_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|612562_613396_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|613395_614337_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|614588_615584_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|615701_617990_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|618296_619205_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|619259_620225_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|620299_621961_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|621957_622743_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|622709_622874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|622891_623842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|624540_624924_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|624981_625584_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|625601_626003_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|626136_627030_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|627026_627608_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|628402_629137_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|629177_630227_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|630374_630953_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|631339_632317_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|632410_636805_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|637005_637854_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|638012_638825_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|638880_639831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|639817_639982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|639929_640730_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|640791_641175_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|641186_642620_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|642826_643156_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|643158_643827_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|644090_645011_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|645057_645270_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|645292_645715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|645731_646832_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|646928_648446_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|648521_649361_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|649382_650264_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|650345_651440_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|651733_652684_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|652758_653700_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	659018	705215	4110338	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|659018_660050_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|660090_660330_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|660399_661989_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661988_662537_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662617_663190_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|663208_664120_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|664193_665162_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|665284_666358_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|666362_668183_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|668259_669210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|669298_669634_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669767_670418_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|670439_671858_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671927_672683_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672651_673410_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|673420_674302_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|674318_675026_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|675028_675787_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|675996_677739_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677731_678256_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|678295_679090_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|679257_680331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680429_681380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|681631_681844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681909_682521_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|683000_683321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|683313_684012_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|684026_684248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684265_685216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|685891_686341_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|686327_687605_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687607_689026_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689054_690110_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690115_690358_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|690480_691083_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691511_692462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|692479_693127_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|693136_693388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693450_693933_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|693934_694135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694134_694530_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694526_694925_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694921_695344_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695351_695852_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696106_696625_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696634_696964_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696981_697272_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697297_699910_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699919_700279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700346_700880_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700876_701266_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701258_705215_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 9
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	711381	781456	4110338	tRNA,transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_003814636.1|711381_713112_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713164_713593_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713595_714276_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714275_714734_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|715760_717077_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717108_717606_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717692_718382_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718381_719431_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719427_720222_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720390_720741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720716_721274_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|722198_722417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|722403_723354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|725632_726721_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726723_728166_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728270_729416_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729447_730245_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730269_731829_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731825_734198_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734307_735411_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735410_736103_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736246_736948_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736932_737310_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738041_738992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|738978_739122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|739151_740024_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740364_740583_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740622_742002_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742043_743441_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743480_745133_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745136_746021_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746020_746962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747040_748660_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748826_749642_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749709_750279_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750279_751230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751884_752982_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753015_754281_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929982.1|755631_756222_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756237_758682_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758801_759773_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759904_760429_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760388_761339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761560_763756_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763828_764236_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077069081.1|764183_764372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|764358_765309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|765424_765868_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|765930_766725_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|766890_768027_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|768097_769231_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|769380_769641_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|769674_769986_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|770410_771559_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|771673_772639_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|772907_773774_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|773904_775953_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|775970_777968_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|778002_779340_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_023853308.1|779602_781456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	889996	944563	4110338	transposase	Acidithiobacillus_phage(33.33%)	48	NA	NA
WP_023994644.1|889996_891013_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|891209_892193_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|893791_895180_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|895210_896200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|896310_897543_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|897824_898625_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|898647_900879_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|901666_902113_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|902134_902881_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|903024_904002_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|904635_905247_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|905240_906458_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|906598_907549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|907545_908265_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|908385_910545_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|910635_910905_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|910993_911200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|911198_911726_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|911744_912524_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|912691_913708_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|913780_914272_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|914282_915998_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|917161_918112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|918108_919959_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|920339_920999_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|921086_921239_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|921347_921515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|921526_922207_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|922488_923205_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|923219_924521_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|926665_929554_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|929777_931130_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|931158_931680_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|931676_933131_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|933165_933414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|933519_934395_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|934420_935476_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|935488_936280_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|936312_937683_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|938735_938873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|938859_939810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|939862_940084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|940243_940456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|940575_941694_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|941790_942006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|942199_942451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|942563_943514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|943612_944563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1002550	1075066	4110338	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|1002550_1003501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1003605_1004655_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1004792_1005809_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1007317_1007890_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1007949_1008681_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1008732_1009650_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1010457_1013637_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1013633_1015016_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1015085_1015337_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1015482_1016133_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1016283_1018398_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1018473_1019325_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1019321_1019948_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1019944_1021699_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1021991_1024697_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1024709_1026371_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1026383_1028174_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1028395_1029571_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930130.1|1030661_1031402_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1031596_1033633_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1033650_1034661_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1034778_1035972_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1036001_1036775_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1036771_1037962_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1037987_1038926_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1038922_1041271_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1041425_1042133_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1042170_1043304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1043396_1043549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1043580_1044129_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1044147_1044633_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1044810_1045749_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1045751_1046069_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1046114_1047059_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1048739_1049390_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1049443_1049779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1049775_1050636_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1050652_1050934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1051007_1051271_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1051514_1052465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1052763_1053501_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1053936_1054260_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1054294_1054855_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1054975_1055851_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1055863_1056811_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1056912_1057206_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1057232_1059290_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1059304_1059805_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1059878_1061585_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1062448_1063501_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1063553_1063943_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1063951_1064584_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1064683_1065700_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1066530_1067538_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1067534_1069178_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1069174_1070077_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1070202_1070676_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1070665_1071688_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1071684_1073112_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1074049_1075066_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1083687	1157932	4110338	holin,tRNA,transposase	Planktothrix_phage(18.18%)	58	NA	NA
WP_023853536.1|1083687_1084704_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1086570_1087992_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1088255_1088972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1089056_1089374_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1089414_1089828_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089829_1090189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1090231_1091776_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091859_1092690_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1092724_1093879_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093921_1094794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094910_1097199_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1098405_1098870_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098896_1099847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099864_1100002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1100214_1100991_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1101035_1101893_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101914_1102931_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1103065_1104106_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1104300_1106382_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1106617_1108111_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1108341_1109136_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1109356_1110715_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1110711_1111554_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1111572_1113459_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1113696_1114329_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1114347_1114950_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1114953_1115115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930177.1|1116853_1117654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1117697_1118684_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118823_1119837_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119833_1120784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1120801_1120942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120896_1121355_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1121391_1122705_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1122722_1123094_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1123090_1124554_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_003812697.1|1124646_1125423_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_076879621.1|1125404_1128284_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1128466_1129417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1129584_1130409_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1130408_1131287_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1132191_1133307_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930187.1|1133314_1134130_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930188.1|1134126_1135992_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1136070_1136703_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1136699_1137002_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1137044_1138565_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1138571_1139327_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1139356_1140461_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1140563_1142264_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1142245_1143223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1143232_1144513_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1144505_1145201_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1145234_1146062_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1146343_1149574_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930195.1|1149842_1150019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930196.1|1150309_1154236_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1156135_1157932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1355223	1421014	4110338	transposase	Planktothrix_phage(100.0%)	48	NA	NA
WP_005012067.1|1355223_1356174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879575.1|1356160_1356643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356912_1357344_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357525_1357930_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1359166_1359490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359492_1360380_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360412_1360838_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360909_1361263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361502_1362009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1362047_1363379_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363438_1364254_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1364250_1365105_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1368167_1370711_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1372077_1373832_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373828_1375949_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375953_1378149_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1378145_1381487_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_153302775.1|1384147_1384303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1384289_1385240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1385305_1385485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1385601_1386324_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1386343_1387489_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1388396_1389347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1389534_1390737_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1390733_1391492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1391885_1392518_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1393473_1396074_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1396061_1399481_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1399488_1400394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1400532_1401111_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1401107_1402019_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1402032_1402713_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1402914_1404954_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1404972_1405959_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1405984_1406782_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1406778_1407972_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1407968_1408931_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1408948_1409989_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1409976_1410585_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1412173_1413169_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1413188_1414367_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1414377_1415295_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1415350_1416301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1416399_1417350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1417448_1418219_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1418215_1418896_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1418962_1419751_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1419997_1421014_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1450887	1506375	4110338	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1450887_1451838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1453039_1453486_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1453478_1454954_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1454950_1455706_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1455698_1456709_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1456698_1458375_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1458687_1459020_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1459033_1459429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1459438_1459765_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1459761_1460088_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1460014_1461037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811825.1|1461033_1461414_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1461431_1461860_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1461867_1463241_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1463381_1463759_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1464021_1465329_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1465389_1466220_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1466216_1466705_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1466746_1468267_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1468310_1468787_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1469590_1472188_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1472217_1473039_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1473765_1474515_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003811801.1|1474647_1475577_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1475674_1476391_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1476405_1476966_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010926572.1|1477003_1477897_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
WP_010930351.1|1477916_1478774_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1478770_1479970_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1480009_1481344_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1481396_1483733_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483858_1484422_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1484430_1485522_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1485593_1486049_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1486049_1486844_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486840_1488022_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1488008_1488614_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1488610_1489384_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1489395_1490223_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1490384_1492748_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492815_1493535_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1493658_1494084_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1494118_1495069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1495186_1496113_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1496178_1497336_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1497316_1497784_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1497931_1498882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498898_1499333_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1499322_1499673_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499869_1501024_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1501020_1502193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1502240_1503134_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1503179_1503617_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1503676_1504366_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1504375_1505326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1505424_1506375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1602829	1669153	4110338	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1602829_1603780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1603786_1604899_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1605585_1606788_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1606991_1609652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1609664_1613069_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1613735_1615961_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1616007_1616334_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1616384_1616993_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1617091_1618042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1618111_1618876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1618872_1619472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1619575_1620421_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1620486_1621113_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1621109_1622060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1622046_1622235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1622158_1623280_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1623260_1624262_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1624367_1625879_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1625875_1627180_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1627291_1627852_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1628119_1628674_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1629129_1629345_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1629599_1632197_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1632193_1633381_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1634035_1634650_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1634738_1635866_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1635877_1636783_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1637533_1637689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1637675_1638626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1638807_1639560_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1639628_1640288_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1640284_1641013_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1641025_1643305_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1643329_1643533_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1643574_1644222_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1644342_1645260_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1645256_1645970_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1646207_1646978_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1646982_1647582_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1647826_1649317_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1649375_1649660_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1649656_1649785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1649797_1649953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1650225_1651152_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1651288_1652029_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1652195_1653572_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1653753_1654659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1656310_1658113_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1658230_1658881_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1658979_1659930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1659951_1661172_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1661357_1662770_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1662833_1663901_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1663897_1665388_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1665397_1666342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1666501_1667200_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1667277_1668183_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1668202_1669153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1705102	1760693	4110338	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1705102_1706053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1706111_1706885_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1706877_1708434_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1708430_1709381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1709367_1709523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1710707_1711310_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1711549_1712251_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1712244_1713027_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1713211_1714162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1714148_1714310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1714260_1714998_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1715187_1715946_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1715992_1716982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1717159_1718128_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1719667_1720636_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1720644_1721586_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1722059_1723070_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1723060_1724575_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1724571_1725918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1725920_1726955_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1727004_1728630_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1729182_1730133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1730237_1731185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1731238_1733053_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1733045_1733720_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1733849_1736924_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1736937_1737237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1737551_1738175_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1738418_1739288_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1739265_1740210_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1740295_1741267_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1741334_1742108_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1742104_1743301_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1743331_1744282_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1744503_1745193_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1745257_1746013_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1746064_1747057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1747066_1748020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1748135_1749098_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1750499_1750928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1750924_1751875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1752168_1752891_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1753329_1754517_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1754520_1754901_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1756620_1757592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1757605_1758319_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1758323_1759241_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1759347_1759644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1759742_1760693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	1993456	2063107	4110338	tRNA,transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1993456_1996114_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1996191_1997394_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1997390_1997903_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1998025_1998364_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1998739_1999690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1999788_2000739_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000902_2002798_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002911_2003079_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2003142_2003379_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2003747_2004947_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2006462_2007413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007864_2008866_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2009038_2009896_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009892_2011155_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2011255_2011630_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|2011678_2012890_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012974_2013745_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013858_2014623_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|2014738_2015875_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015871_2016678_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2018422_2019394_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019550_2020063_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2020221_2021196_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2022196_2022991_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2023016_2023823_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|2023933_2024524_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2024534_2025713_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025815_2026190_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2026442_2027774_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027840_2031071_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2032561_2033308_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2033392_2033854_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033891_2034950_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034912_2036742_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2036781_2037354_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|2038778_2039690_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|2039918_2041241_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2041599_2042235_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2042194_2043145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2044015_2044888_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044965_2046105_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2046454_2047720_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2047725_2048253_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2048257_2049076_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2049075_2049798_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049819_2050134_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2050130_2051300_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2051330_2052206_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2052202_2053522_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2053594_2054791_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2054801_2056289_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058883_2059783_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059920_2060886_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060984_2061935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2061978_2062170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2062156_2063107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2074603	2123999	4110338	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2074603_2075554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2076691_2076988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2077162_2078515_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2078657_2079674_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2081653_2082667_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2082753_2083659_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083815_2084160_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2084317_2084776_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2084789_2087006_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2087002_2088064_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2088092_2089067_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2089018_2089837_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089849_2090458_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2090632_2091028_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2091046_2092486_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2092514_2092862_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092880_2093831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2093817_2093979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2094483_2095434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2095517_2097335_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2097408_2098056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2098068_2098998_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2099167_2099632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099879_2100560_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2100608_2102300_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2102315_2102867_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102863_2103235_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2103347_2104184_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2104194_2104719_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104816_2104996_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2105125_2106157_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2106230_2106587_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2106576_2107452_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2107550_2108435_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2108456_2109752_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2110700_2111351_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2111438_2112959_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2113216_2115082_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2116127_2117078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2118050_2118410_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2118397_2119834_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119830_2120484_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2120480_2121680_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2121777_2123052_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2123048_2123999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2135203	2175894	4110338	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2135203_2136154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2136252_2137203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2137162_2137576_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137860_2138160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2138569_2140738_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_010930784.1|2141537_2143568_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2143587_2143800_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2144077_2144617_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2144730_2146038_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2146102_2147260_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2147443_2148343_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2148361_2149666_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2149631_2150738_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150825_2151062_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2151200_2152271_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2152274_2153630_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2153656_2154817_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154819_2155458_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2155459_2156764_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2156804_2158100_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2158106_2158613_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2158609_2159758_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2159785_2160211_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2160533_2163416_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2163508_2164264_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2165029_2166379_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2166477_2167428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2167526_2168477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2168550_2169024_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2169049_2170258_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2170254_2171028_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2171027_2171651_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171816_2172077_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2172380_2172962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2173028_2173283_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2173269_2175894_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2203677	2269226	4110338	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2203677_2204628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2204614_2204773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2204828_2205638_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2205762_2206713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2206709_2207603_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2207727_2207922_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207921_2208263_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2208272_2210135_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2210264_2210777_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2210779_2211103_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2211104_2211515_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2211552_2212764_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2212781_2213294_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2213509_2214001_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2214253_2216290_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2216367_2217570_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2217620_2218349_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|2219906_2220857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2221427_2221640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2221657_2222389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2222423_2223065_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2223057_2223774_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225938_2226715_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2226736_2227894_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227890_2228322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2228318_2229122_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2229135_2229591_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2229603_2230575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2230640_2231864_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2232091_2233042_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2233165_2235619_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235807_2237112_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2237216_2237870_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237872_2239183_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2239361_2239940_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2240051_2240252_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2240597_2241164_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2241247_2241451_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2241757_2242078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2242119_2242401_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2242475_2243732_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2244114_2244444_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2246014_2246836_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246835_2247975_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247981_2248878_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2248874_2250800_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2251159_2253772_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253824_2256125_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2256121_2257330_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2257591_2257966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257962_2258913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2259011_2261006_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2261065_2262031_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2262020_2264882_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264884_2265391_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2265495_2266704_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2266705_2267644_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267805_2268279_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2268275_2269226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2688868	2729536	4110338	tRNA,transposase	Salmonella_phage(33.33%)	46	NA	NA
WP_010929591.1|2688868_2689819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689929_2690112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690211_2690808_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690991_2692083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692582_2692993_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2693051_2693393_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2693398_2695816_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695828_2696851_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696925_2697285_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697300_2697498_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697833_2698784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2698770_2698932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2698978_2699428_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699424_2700375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2700361_2700502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2700485_2701934_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2702048_2702330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2702282_2702447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702433_2703384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703628_2704342_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704464_2704692_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704986_2705625_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2705697_2706768_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2706764_2707715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708130_2708655_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708658_2708928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709126_2710188_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710271_2711906_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711907_2712711_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712739_2713699_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713702_2715217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715253_2716258_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2716265_2716499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2716688_2717159_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717194_2717806_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717836_2718460_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718540_2720073_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2720107_2721349_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721392_2722424_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722420_2723590_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723583_2724264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724425_2725268_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725430_2726402_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726573_2727452_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727474_2728545_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728585_2729536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2785000	2857870	4110338	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2785000_2785417_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785527_2786160_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786188_2786632_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786653_2787745_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787799_2788600_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788735_2789356_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789495_2789969_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791108_2792059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792055_2799717_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799957_2804004_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804316_2804898_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804894_2806193_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806272_2807301_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2807224_2807575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2807561_2808512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808508_2809459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809775_2810381_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810434_2811748_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811822_2812293_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812292_2813081_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813091_2814744_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814831_2815782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816943_2817450_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817446_2818211_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818226_2818511_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818575_2819565_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819736_2820666_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820637_2821324_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821357_2821903_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821947_2823213_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823209_2824112_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825293_2826238_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826332_2827850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827891_2829520_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829627_2830509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833621_2833996_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834020_2834359_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834402_2836037_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836075_2837422_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837529_2838951_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839020_2839605_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839707_2840658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840792_2841899_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841909_2843007_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843151_2844357_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844363_2844885_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844881_2845373_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845369_2845621_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845601_2846087_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846222_2849684_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2849680_2850586_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850595_2851027_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851273_2851777_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2851788_2853255_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853329_2854205_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854201_2855209_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855676_2855982_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856072_2856663_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856853_2857870_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2861013	2927822	4110338	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2861013_2861964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862062_2863013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863009_2863804_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863835_2864540_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864614_2865415_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865411_2865819_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865815_2866457_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2866449_2868471_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869710_2871042_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871038_2871989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873695_2873962_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874669_2875008_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879560_2880163_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880259_2881549_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881606_2882338_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882334_2883138_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883134_2884223_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884219_2885149_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885297_2886443_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_154698391.1|2887431_2887590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887744_2891566_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891722_2892391_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892395_2894069_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894087_2895407_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2895411_2897763_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2897782_2899951_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899947_2905137_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905226_2905541_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905768_2906014_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906108_2906627_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906726_2907932_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908047_2909445_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909561_2910140_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910212_2911604_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911771_2912722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913002_2913623_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913619_2914033_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914029_2915073_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915128_2915317_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915326_2916091_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916181_2916838_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916929_2917688_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917713_2919315_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919515_2920520_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920620_2920884_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921001_2921778_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922368_2923319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925702_2926815_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926871_2927822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	2958208	2997397	4110338	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2958208_2959159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2959145_2959391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959279_2960176_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962453_2964679_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964843_2965932_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965888_2966542_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966589_2967387_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967918_2968869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968949_2970098_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970154_2971105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2971091_2971310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2971203_2971509_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971537_2971972_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971973_2973218_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973214_2973925_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973939_2974851_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975213_2975618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975614_2976073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976079_2976988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976984_2977851_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977837_2978665_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978675_2979803_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980880_2982119_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982160_2983423_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983429_2984182_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984233_2984419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984694_2985159_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985190_2985850_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985994_2988103_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988099_2989050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989153_2989774_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989877_2990618_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991752_2992877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992922_2993291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993532_2994483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995518_2996061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2996253_2996460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996446_2997397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	3124482	3188316	4110338	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	58	NA	NA
WP_005015810.1|3124482_3125433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3125578_3126703_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3126908_3127472_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3128466_3128949_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3129106_3130354_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3130573_3131230_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3131265_3132495_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_023995983.1|3132617_3132776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3132762_3133713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3133804_3135220_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3135225_3136362_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3136431_3136803_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3136890_3137637_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3137673_3138738_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3138926_3139319_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3139328_3139757_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3140052_3141150_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3141491_3142856_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3142914_3143466_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3143479_3144154_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3145410_3146220_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3146222_3147059_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3147073_3147766_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3147777_3148167_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3148272_3149661_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3149777_3151274_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3151570_3152245_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076879584.1|3152138_3152357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3152343_3153294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3153290_3155750_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3155846_3157292_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3157295_3158483_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3158551_3159061_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3159262_3159715_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3160276_3163339_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3163644_3166572_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3166593_3167790_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3168107_3168635_+	histone	NA	NA	NA	NA	NA
WP_010931237.1|3168773_3169349_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3169356_3170820_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3170830_3171958_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814939.1|3171965_3172091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814941.1|3172087_3173215_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3173240_3173480_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3173760_3174264_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3174436_3175378_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3175389_3176487_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3177452_3178799_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3178808_3179258_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3179347_3179782_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3179860_3180409_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3180491_3181862_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3181872_3182466_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3182537_3184421_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3184458_3185358_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3185354_3186218_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3186316_3187267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3187365_3188316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	3236459	3251696	4110338	protease,transposase	Erwinia_phage(100.0%)	17	NA	NA
WP_005012808.1|3236459_3237410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995100.1|3237369_3237546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|3237854_3238166_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3238165_3238696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3238652_3238841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3238858_3239809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3239907_3240858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3241147_3241612_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3241626_3243132_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3243385_3244993_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3245048_3245954_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3246394_3247345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3247443_3248394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3248475_3249057_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3249481_3249787_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3249800_3251135_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3251156_3251696_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 27
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	3270119	3322037	4110338	holin,tRNA,transposase	Tupanvirus(16.67%)	42	NA	NA
WP_010931277.1|3270119_3270455_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3270454_3271297_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3271395_3272346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3272410_3273382_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3273445_3274465_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3274466_3275840_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3276117_3276798_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3276810_3278937_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3278933_3280028_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3280042_3281302_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3281321_3283046_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3283284_3284037_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023994812.1|3284045_3284189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3284175_3285126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3285438_3286917_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3286923_3288033_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3288044_3288725_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3288746_3289502_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3289637_3290522_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3290609_3291191_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931295.1|3291283_3291406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566249.1|3291451_3291751_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_076879609.1|3291902_3292328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003808356.1|3294534_3295038_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3295053_3296004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_085964339.1|3295990_3296188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814148.1|3296531_3297305_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3297437_3298448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3298599_3300255_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3300309_3300651_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3300664_3302104_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3302236_3303052_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127063726.1|3303028_3303259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029443749.1|3305582_3306530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3306756_3307497_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3307582_3308533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3309974_3311546_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3311878_3313732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3313776_3316341_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3316759_3317710_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3320575_3321070_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3321086_3322037_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	3403801	3448873	4110338	tRNA,transposase	Staphylococcus_phage(20.0%)	39	NA	NA
WP_005012067.1|3403801_3404752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3404738_3404915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3405518_3406613_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406605_3407940_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407893_3408577_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408602_3409766_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3409762_3410764_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410763_3411636_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411632_3412382_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412378_3413170_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413166_3414306_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3414614_3415367_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415400_3416183_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416186_3416576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417715_3418579_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418614_3419703_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419699_3420650_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3420636_3421050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3421003_3423982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424908_3425787_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427735_3428686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428682_3429150_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429192_3429963_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429983_3430784_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430794_3432204_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432298_3433084_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433323_3434340_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434447_3434840_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434977_3435658_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3435662_3436661_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436729_3437680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439184_3439886_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439885_3441310_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442379_3443720_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443835_3445599_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445710_3446589_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446701_3447517_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447520_3447772_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447856_3448873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	3457221	3520073	4110338	tRNA,transposase	Acinetobacter_phage(27.27%)	53	NA	NA
WP_005015810.1|3457221_3458172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814277.1|3458350_3459295_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3459363_3459579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3459862_3465580_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465585_3466713_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466768_3467395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467666_3468683_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468778_3469489_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469485_3470475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3470606_3472202_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472204_3472942_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473097_3473970_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3474238_3475459_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475455_3476115_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476186_3476819_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476848_3477367_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477377_3478487_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478533_3479388_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479389_3480292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481514_3482465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484221_3485211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485386_3486175_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486171_3487203_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487221_3487785_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487840_3489361_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489624_3490329_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3490336_3491074_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491179_3491554_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491596_3492886_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492882_3494052_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494048_3494888_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494947_3495883_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495895_3496846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496944_3497907_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497938_3498298_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498422_3499325_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499326_3501099_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501133_3501910_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503233_3504184_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3505035_3505356_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3505428_3506310_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3506426_3506669_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3506806_3507277_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3507289_3507829_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3507863_3509405_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3509503_3510409_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3510451_3511852_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3511861_3512284_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3512466_3513351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3513426_3514503_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3514809_3516912_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3516954_3519024_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3519122_3520073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	3537191	3590992	4110338	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3537191_3538142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3538482_3539433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539531_3540482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540778_3541276_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541318_3543094_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3543140_3543968_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543974_3544709_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545878_3546673_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546962_3547553_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547586_3548915_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548989_3550135_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550246_3551245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551207_3551642_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553158_3554043_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554039_3555245_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555241_3556102_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556214_3558005_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3558045_3558711_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3558711_3559020_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559185_3560472_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561905_3562856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564807_3566022_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566127_3567117_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567113_3567722_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567734_3568364_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568360_3568981_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569012_3569804_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3570646_3571111_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571129_3572056_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572109_3573396_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574326_3575199_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575195_3576146_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_010929591.1|3576244_3577195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3577299_3577530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3577656_3578046_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3578062_3580444_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3580436_3581813_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3581828_3582824_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3582842_3583835_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3584075_3584636_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3584640_3584967_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3585003_3585816_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3585826_3586909_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3586995_3588270_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3588992_3589943_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3590041_3590992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP022362	Bordetella pertussis strain J625 chromosome, complete genome	4110338	4009406	4074318	4110338	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009406_4009892_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009980_4010118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010110_4011091_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011357_4012167_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012206_4012887_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012880_4013339_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013350_4013713_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013795_4014479_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014534_4014843_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014861_4015176_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015172_4017647_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017654_4019046_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019042_4019228_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019206_4019908_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019904_4020726_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020706_4021831_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021823_4022843_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4023048_4024083_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024183_4024975_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025057_4025432_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025409_4026819_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026811_4028194_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028528_4030133_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4030168_4031182_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031192_4032119_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032509_4033460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033629_4034856_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035055_4035922_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035914_4036877_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036977_4037928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038026_4038977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039075_4040026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040022_4041516_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041512_4044620_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044616_4047685_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047681_4048932_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4049112_4049874_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049906_4050557_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050559_4051399_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051639_4052383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052465_4052813_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052910_4053753_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053797_4054685_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054711_4054900_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054997_4056455_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056441_4057968_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057986_4058454_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058453_4059476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059596_4060337_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060391_4061492_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061493_4062684_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062803_4063820_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064138_4064810_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064806_4065715_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065926_4066574_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070425_4071502_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071512_4072322_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072411_4073185_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4073204_4073381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073367_4074318_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
