The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	27282	78584	4100915	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64066_64384_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	107426	175249	4100915	tRNA,transposase	Bacillus_phage(22.22%)	58	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120810.1|136093_136237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815155.1|136525_138034_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138780_142743_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142795_143578_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143665_144889_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144872_145805_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145810_146623_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_033446330.1|147934_148858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149024_149807_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150573_151554_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151550_152279_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152303_152735_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152836_153712_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929651.1|153762_154983_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929652.1|155066_155528_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155633_157031_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157027_157705_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157760_159071_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159082_159781_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159944_160721_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160886_161909_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162137_162773_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929658.1|162769_164332_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164890_165841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167284_168187_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168164_168794_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169124_170507_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170540_171170_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174132_174312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	178631	236268	4100915	tRNA,protease,transposase	Klosneuvirus(14.29%)	49	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181330_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189527_189974_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190752_193023_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193071_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194402_195353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195398_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197375_198476_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198557_198932_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198991_201856_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205632_206583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207167_208217_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208213_209038_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211152_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219051_221994_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013037.1|225387_225588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003818947.1|225619_226315_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226331_227744_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232217_233219_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233333_234284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	250682	303018	4100915	tRNA,protease,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_003814337.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251620_253510_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253596_254235_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265570_266521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267709_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274097_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277137_278088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278074_278290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278365_278527_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278534_278675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279193_279643_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279652_280264_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280422_281277_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281296_282679_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282743_283385_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283524_283983_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284007_284784_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284837_285974_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285970_286921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287019_287646_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287668_288595_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288603_290190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290186_291191_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291390_292251_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292282_293284_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293354_294164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294241_296101_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296229_297432_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297545_298427_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299929_300490_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300549_301500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299516.1|301486_301645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111735998.1|301691_301979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302067_303018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	390854	448363	4100915	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390854_391805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391791_391959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391941_392859_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392855_393104_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393100_394306_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394378_395374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395396_396617_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396613_397258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398988_399798_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400015_401056_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_158501072.1|401024_401168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401154_402138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402064_402766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402814_403585_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403581_404823_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404927_406634_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406630_407527_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407567_409157_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409206_410199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410267_410867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411327_412305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412383_413334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413422_414337_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414333_414993_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415082_416006_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416011_416467_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416463_417567_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417525_417795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417754_419374_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419370_420429_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420558_421053_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421145_422123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422318_423524_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423520_425032_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425047_426361_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426551_426731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427140_427875_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430319_431270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431401_431800_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432210_432681_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432769_433114_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433213_434614_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436402_436921_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437031_437787_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437982_439215_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439207_439993_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440059_441031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441041_442019_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442144_443317_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443343_444372_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444437_445631_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447412_448363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	590417	651608	4100915	protease,transposase	uncultured_Mediterranean_phage(40.0%)	57	NA	NA
WP_005013747.1|590417_591368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591843_592734_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592730_593552_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593751_594243_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594261_595335_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595381_596485_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596560_597181_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597201_597711_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597765_598017_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598080_599214_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599221_599608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599604_602124_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602552_602891_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602887_603394_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603455_604256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604366_605308_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605401_606937_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608616_610467_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610470_611304_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611303_612245_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612496_613492_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613609_615898_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616204_617113_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617167_618133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618207_619869_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619865_620651_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620617_620782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620799_621750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622448_622832_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622889_623492_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623509_623911_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624044_624938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624934_625516_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626310_627045_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627085_628135_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628282_628861_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629247_630225_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630318_634713_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634913_635762_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635920_636733_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636788_637739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637725_637890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637837_638638_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638699_639083_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639094_640528_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640734_641064_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641066_641735_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641998_642919_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642965_643178_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643200_643623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643639_644740_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644836_646354_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646429_647269_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647290_648172_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648253_649348_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649641_650592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650666_651608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	656926	703123	4100915	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(17.39%)	53	NA	NA
WP_003814219.1|656926_657958_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657998_658238_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658307_659897_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659896_660445_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660525_661098_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661116_662028_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662101_663070_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663192_664266_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664270_666091_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666167_667118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995786.1|667104_667266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446132.1|667206_667542_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667675_668326_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668347_669766_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669835_670591_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670559_671318_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671328_672210_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672226_672934_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672936_673695_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673904_675647_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675639_676164_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676203_676998_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677165_678239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678337_679288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679539_679752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679817_680429_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680908_681229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681221_681920_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681934_682156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682173_683124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683799_684249_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684235_685513_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685515_686934_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686962_688018_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688023_688266_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688388_688991_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689419_690370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690387_691035_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691044_691296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691358_691841_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691842_692043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692042_692438_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692434_692833_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692829_693252_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693259_693760_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694014_694533_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694542_694872_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694889_695180_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695205_697818_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697827_698187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698254_698788_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698784_699174_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699166_703123_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	709289	763218	4100915	tRNA,transposase	Planktothrix_phage(50.0%)	48	NA	NA
WP_003814636.1|709289_711020_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711072_711501_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711503_712184_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712183_712642_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|713668_714985_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715016_715514_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715600_716290_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716289_717339_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717335_718130_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718298_718649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718624_719182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|720106_720325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|720311_721262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|723540_724629_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724631_726074_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726178_727324_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727355_728153_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728177_729737_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729733_732106_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732215_733319_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733318_734011_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734154_734856_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734840_735218_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735949_736900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|736886_737030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|737059_737932_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738272_738491_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738530_739910_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739951_741349_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741388_743041_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743044_743929_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743928_744870_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744948_746568_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746734_747550_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747617_748187_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748187_749138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749792_750890_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750923_752189_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|752346_753297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753540_754131_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754146_756591_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756710_757682_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757813_758338_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758297_759248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759469_761665_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761737_762145_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762092_762281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762267_763218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	885807	953783	4100915	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885807_886824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887020_888004_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889602_890991_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891021_892011_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892121_893354_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893635_894436_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894458_896690_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897477_897924_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897945_898692_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898835_899813_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900446_901058_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901051_902269_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902409_903360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903356_904076_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904196_906356_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906446_906716_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906804_907011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907009_907537_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907555_908335_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908502_909519_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909591_910083_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910093_911809_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912972_913923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913919_915770_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916150_916810_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916897_917050_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917158_917326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917337_918018_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918299_919016_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919030_920332_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922476_925365_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925588_926941_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926969_927491_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927487_928942_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928976_929225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929330_930206_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930231_931287_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931299_932091_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932123_933494_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934546_934684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|934670_935621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935673_935895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936054_936267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936386_937505_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937601_937817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938010_938262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938374_939325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939321_939705_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930067.1|939759_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941723_942551_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942596_943577_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943573_943786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943782_944964_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945127_945862_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945863_948476_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948611_950525_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951140_951551_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951648_952734_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952832_953783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	976961	1047228	4100915	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_010929591.1|976961_977912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977992_978904_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978964_980110_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980129_981044_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981115_981865_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981864_982794_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983037_984864_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984946_985588_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985777_986812_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988648_989713_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990510_991419_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992906_994181_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994334_994715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994722_995595_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995900_996281_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996491_997217_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997312_998263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998367_999417_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999554_1000571_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002079_1002652_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002711_1003443_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003494_1004412_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005219_1008399_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008395_1009778_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009847_1010099_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1010244_1010895_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011045_1013160_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013235_1014087_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014083_1014710_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014706_1016461_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016753_1019459_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019471_1021133_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021145_1022936_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023157_1024333_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024375_1025326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025424_1026165_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026359_1028396_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028413_1029424_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029541_1030735_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030764_1031538_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031534_1032725_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032750_1033689_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033685_1036034_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1036188_1036896_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036933_1038067_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038159_1038312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038343_1038892_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038910_1039396_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039573_1040512_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040514_1040832_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040877_1041822_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043502_1044153_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044206_1044542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044538_1045399_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045415_1045697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045770_1046034_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046277_1047228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1059446	1116584	4100915	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1059446_1060463_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061293_1062301_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062297_1063941_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063937_1064840_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064965_1065439_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065428_1066451_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066447_1067875_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068812_1069829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070161_1071097_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071146_1073027_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073093_1073438_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073582_1074719_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074715_1075789_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075946_1077383_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077473_1078115_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078450_1079467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079555_1082303_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082369_1083791_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084054_1084771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1084855_1085173_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085213_1085627_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085628_1085988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086030_1087575_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087658_1088489_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088523_1089678_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089720_1090593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090709_1092998_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094204_1094669_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094695_1095646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095663_1095801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096013_1096790_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1096834_1097692_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097713_1098730_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1098864_1099905_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100099_1102181_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102416_1103910_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104140_1104935_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105155_1106514_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106510_1107353_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107371_1109258_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1109495_1110128_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110146_1110749_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_157737558.1|1110752_1110914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1110900_1111851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1112653_1113454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1113497_1114484_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114623_1115637_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115633_1116584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1151935	1217519	4100915	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1151935_1153732_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153731_1154700_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1154769_1155615_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155682_1156237_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156283_1157234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157332_1157965_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158129_1160412_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160566_1163263_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163388_1163877_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166287_1169158_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169203_1170418_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170647_1172075_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1172115_1173264_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173276_1174035_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174122_1175025_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175021_1175972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176101_1177085_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177139_1177862_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179340_1180696_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1180776_1183152_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183316_1185392_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185453_1186254_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186355_1187318_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187305_1188061_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188168_1189806_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1189873_1190611_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190713_1191289_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191461_1191998_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1192000_1192345_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192360_1193206_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193244_1194624_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194701_1195583_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195681_1196632_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196628_1197039_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197146_1198001_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1197993_1198956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199001_1200126_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1200237_1201110_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201234_1202014_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202167_1203589_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204023_1205721_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1205749_1205872_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1205947_1206889_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207215_1207962_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1207969_1208896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209017_1209935_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1209974_1210928_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1210952_1211531_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213204_1213813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1213890_1214244_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214327_1215317_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215313_1215502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215519_1216470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216568_1217519_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1380084	1446584	4100915	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1380084_1381035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381100_1381280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1381396_1382119_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382138_1383284_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384191_1385142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1385329_1386532_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1386528_1387287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1387680_1388313_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1389268_1391869_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1391856_1395276_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1395283_1396189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1396327_1396906_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1396902_1397814_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1397827_1398508_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1398709_1400749_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1400767_1401754_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1401779_1402577_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1402573_1403767_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1403763_1404726_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1404743_1405784_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1405771_1406380_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1407968_1408964_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1408983_1410162_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1410172_1411090_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1411145_1412096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1412194_1412965_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1412961_1413642_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1413708_1414497_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1414743_1415760_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1416065_1417220_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1421725_1422208_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1422225_1422516_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1422642_1423353_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1423536_1423944_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1423956_1424376_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1424423_1425128_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1425193_1426615_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1426653_1427418_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1427461_1428247_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1428246_1428936_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1428938_1430072_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1430089_1431112_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1431181_1432828_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1432861_1434394_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1434472_1436293_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1436413_1438033_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1438211_1439654_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1439870_1440887_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1440933_1441722_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1441744_1442014_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1442030_1442822_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1442833_1443175_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1443185_1443686_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1443678_1444689_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1444691_1445264_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1445633_1446584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1488864	1550844	4100915	tRNA,transposase	Planktothrix_phage(28.57%)	56	NA	NA
WP_005012067.1|1488864_1489815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1489932_1490859_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1490924_1492082_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492062_1492530_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492677_1493628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493644_1494079_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494068_1494419_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494615_1495770_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1495766_1496939_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1496986_1497880_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1497925_1498363_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498422_1499112_+	VIT family protein	NA	NA	NA	NA	NA
WP_023998563.1|1499121_1500072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1500170_1501154_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1501416_1502514_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1502524_1505767_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1506788_1507433_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1507443_1508343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1508390_1509476_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1509472_1511167_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1511200_1511359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1511345_1512296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247209.1|1512437_1512740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247210.1|1512755_1513808_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003820487.1|1513849_1514911_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_010930369.1|1514944_1515781_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812685.1|1515790_1516333_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930370.1|1516346_1517639_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_077274082.1|1517635_1518244_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_004567450.1|1518381_1519479_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_003820494.1|1519485_1520046_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|1520042_1520723_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_029443766.1|1520719_1522837_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_019248667.1|1522833_1523463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853518.1|1523614_1523824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247523.1|1523838_1526808_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_003812666.1|1527442_1527676_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930376.1|1527688_1528846_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_004567447.1|1528868_1529243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930377.1|1529276_1530392_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930378.1|1531291_1531996_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_004567445.1|1531992_1532811_+	solute-binding protein	NA	NA	NA	NA	NA
WP_023853504.1|1533064_1534498_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_010930380.1|1534512_1535163_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930381.1|1535244_1536321_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930382.1|1536507_1537638_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853502.1|1537688_1539392_+	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930384.1|1539395_1540208_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_014486072.1|1540352_1541447_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930386.1|1541658_1542288_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930387.1|1542290_1543958_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930388.1|1543972_1544629_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_005012067.1|1545108_1546059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1546085_1546859_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1546870_1548112_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1549893_1550844_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1596526	1662856	4100915	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1596526_1597477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1597483_1598596_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1599282_1600485_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1600688_1603349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1603361_1606766_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1607433_1609659_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1609705_1610032_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1610082_1610691_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1610789_1611740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1611809_1612574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1612570_1613170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1613273_1614119_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1614184_1614811_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1614807_1615758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1615744_1615933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1615856_1616978_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1616958_1617960_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1618065_1619577_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1619573_1620878_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1620989_1621550_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1621817_1622372_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1622827_1623043_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1623297_1625895_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1625891_1627079_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1627738_1628353_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1628441_1629569_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1629580_1630486_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1631236_1631392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1631378_1632329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1632510_1633263_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1633331_1633991_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1633987_1634716_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1634728_1637008_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1637032_1637236_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1637277_1637925_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1638045_1638963_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1638959_1639673_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1639910_1640681_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1640685_1641285_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1641529_1643020_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1643078_1643363_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1643359_1643488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1643500_1643656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1643928_1644855_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1644991_1645732_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1645898_1647275_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1647456_1648362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1650013_1651816_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1651933_1652584_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1652682_1653633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1653654_1654875_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1655060_1656473_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1656536_1657604_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1657600_1659091_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1659100_1660045_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1660204_1660903_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1660980_1661886_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1661905_1662856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1698805	1754402	4100915	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1698805_1699756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1699814_1700588_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1700580_1702137_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1702133_1703084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302778.1|1703070_1703226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1704410_1705013_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1705252_1705954_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1705947_1706730_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1706914_1707865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1707851_1708013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1707963_1708701_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1708890_1709649_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1709695_1710685_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1710862_1711831_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1713370_1714339_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1714347_1715289_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1715762_1716773_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1716763_1718278_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1718274_1719621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1719623_1720658_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1720707_1722333_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1722885_1723836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1723940_1724888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1724941_1726756_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1726748_1727423_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_094158938.1|1727552_1730633_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1730646_1730946_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1731260_1731884_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1732127_1732997_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1732974_1733919_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1734004_1734976_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1735043_1735817_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1735813_1737010_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1737040_1737991_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1738212_1738902_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1738966_1739722_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1739773_1740766_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1740775_1741729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1741844_1742807_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1744208_1744637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1744633_1745584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1745877_1746600_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1747038_1748226_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1748229_1748610_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1750329_1751301_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1751314_1752028_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1752032_1752950_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1753056_1753353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1753451_1754402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	1987175	2056827	4100915	tRNA,transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1987175_1989833_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1989910_1991113_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1991109_1991622_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1991744_1992083_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1992458_1993409_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1993507_1994458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1994621_1996517_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1996630_1996798_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1996861_1997098_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1997466_1998666_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2000181_2001132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2001583_2002585_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2002757_2003615_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2003611_2004874_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2004974_2005349_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|2005397_2006609_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2006693_2007464_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2007577_2008342_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|2008457_2009594_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2009590_2010397_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2012141_2013113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2013269_2013782_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2013940_2014915_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2015915_2016710_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2016735_2017542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|2017652_2018243_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2018253_2019432_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2019534_2019909_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2020161_2021493_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2021559_2024790_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2026280_2027027_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2027111_2027573_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2027610_2028669_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2028631_2030461_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2030500_2031073_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|2032497_2033409_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|2033637_2034960_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2035319_2035955_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2035914_2036865_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2037735_2038608_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2038685_2039825_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2040174_2041440_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2041445_2041973_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2041977_2042796_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2042795_2043518_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2043539_2043854_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2043850_2045020_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2045050_2045926_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2045922_2047242_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2047314_2048511_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2048521_2050009_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2052603_2053503_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2053640_2054606_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_094158941.1|2054704_2055655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2055698_2055890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2055876_2056827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2068323	2117719	4100915	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2068323_2069274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2070411_2070708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2070882_2072235_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2072377_2073394_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2075373_2076387_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2076473_2077379_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2077535_2077880_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2078037_2078496_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2078509_2080726_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2080722_2081784_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2081812_2082787_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2082738_2083557_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2083569_2084178_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2084352_2084748_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2084766_2086206_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2086234_2086582_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2086600_2087551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2087537_2087699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2088203_2089154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2089237_2091055_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2091128_2091776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2091788_2092718_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2092887_2093352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2093599_2094280_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2094328_2096020_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2096035_2096587_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2096583_2096955_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2097067_2097904_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2097914_2098439_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2098536_2098716_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2098845_2099877_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2099950_2100307_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2100296_2101172_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2101270_2102155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2102176_2103472_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2104420_2105071_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_094158945.1|2105158_2106679_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2106936_2108802_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2109847_2110798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2111770_2112130_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2112117_2113554_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2113550_2114204_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2114200_2115400_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2115497_2116772_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2116768_2117719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2128923	2169614	4100915	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2128923_2129874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2129972_2130923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2130882_2131296_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2131580_2131880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2132289_2134458_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|2135037_2135232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2135257_2137288_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2137307_2137520_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2137797_2138337_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2138450_2139758_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2139822_2140980_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2141163_2142063_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2142081_2143386_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2143351_2144458_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2144545_2144782_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2144920_2145991_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2145994_2147350_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2147376_2148537_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2148539_2149178_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2149179_2150484_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2150524_2151820_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2151826_2152333_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2152329_2153478_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2153505_2153931_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2154253_2157136_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2157228_2157984_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2158749_2160099_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2160197_2161148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2161246_2162197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2162270_2162744_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2162769_2163978_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2163974_2164748_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2164747_2165371_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2165536_2165797_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2166100_2166682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2166748_2167003_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2166989_2169614_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2197397	2262946	4100915	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2197397_2198348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2198334_2198493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2198548_2199358_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2199482_2200433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2200429_2201323_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2201447_2201642_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2201641_2201983_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2201992_2203855_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2203984_2204497_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2204499_2204823_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2204824_2205235_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2205272_2206484_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2206501_2207014_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2207229_2207721_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2207973_2210010_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2210087_2211290_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2211340_2212069_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|2213626_2214577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2215147_2215360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2215377_2216109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2216143_2216785_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2216777_2217494_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2219658_2220435_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2220456_2221614_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2221610_2222042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2222038_2222842_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2222855_2223311_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2223323_2224295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2224360_2225584_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2225811_2226762_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2226885_2229339_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2229527_2230832_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2230936_2231590_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2231592_2232903_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2233081_2233660_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2233771_2233972_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2234317_2234884_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2234967_2235171_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2235477_2235798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2235839_2236121_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2236195_2237452_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2237834_2238164_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2239734_2240556_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2240555_2241695_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2241701_2242598_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2242594_2244520_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2244879_2247492_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2247544_2249845_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2249841_2251050_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2251311_2251686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2251682_2252633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2252731_2254726_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2254785_2255751_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2255740_2258602_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2258604_2259111_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2259215_2260424_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2260425_2261364_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2261525_2261999_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2261995_2262946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2687118	2750353	4100915	tRNA,transposase	Salmonella_phage(25.0%)	59	NA	NA
WP_010931007.1|2687118_2689536_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2689548_2690571_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2690645_2691005_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2691020_2691218_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2691553_2692504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2692490_2692652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2692698_2693148_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2693144_2694095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2694081_2694222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2694205_2695654_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2695768_2696050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2696002_2696167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2696153_2697104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2697348_2698062_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2698184_2698412_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2698706_2699345_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2699417_2700488_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010931012.1|2701849_2702374_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2702377_2702647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2702845_2703907_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2703990_2705625_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2705626_2706430_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2706458_2707418_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2707421_2708936_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2708972_2709977_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2709984_2710218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2710407_2710878_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2710913_2711525_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2711555_2712179_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2712259_2713792_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2713826_2715068_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2715111_2716143_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2716139_2717309_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2717302_2717983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2718144_2718987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2719149_2720121_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2720292_2721171_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2721193_2722264_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2722304_2723255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879564.1|2723241_2723427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931030.1|2723547_2724906_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2725017_2726745_+	sulfate permease	NA	NA	NA	NA	NA
WP_005013747.1|2727366_2728317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2729066_2729501_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2729493_2730729_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2730736_2731531_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2731527_2732331_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2732357_2733335_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2733363_2734935_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2734945_2735767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2737491_2738922_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2738934_2739624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2739719_2741060_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931039.1|2741061_2741349_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_076879563.1|2741407_2741686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931040.1|2741672_2743265_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2743361_2744822_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2745044_2745656_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2749402_2750353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2778720	2851590	4100915	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2778720_2779137_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2779247_2779880_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2779908_2780352_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2780373_2781465_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2781519_2782320_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2782455_2783076_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2783215_2783689_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2784828_2785779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2785775_2793437_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2793677_2797724_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2798036_2798618_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2798614_2799913_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2799992_2801021_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2800944_2801295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2801281_2802232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2802228_2803179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2803495_2804101_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2804154_2805468_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2805542_2806013_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2806012_2806801_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2806811_2808464_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2808551_2809502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2810663_2811170_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2811166_2811931_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2811946_2812231_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2812295_2813285_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2813456_2814386_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2814357_2815044_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2815077_2815623_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2815667_2816933_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2816929_2817832_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2819013_2819958_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2820052_2821570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2821611_2823240_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2823347_2824229_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2827341_2827716_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2827740_2828079_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2828122_2829757_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2829795_2831142_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2831249_2832671_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2832740_2833325_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2833427_2834378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2834512_2835619_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2835629_2836727_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2836871_2838077_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2838083_2838605_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2838601_2839093_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2839089_2839341_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2839321_2839807_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2839942_2843404_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2843400_2844306_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2844315_2844747_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2844993_2845497_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2845508_2846975_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2847049_2847925_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2847921_2848929_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2849396_2849702_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2849792_2850383_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2850573_2851590_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2854733	2921543	4100915	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2854733_2855684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2855782_2856733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2856729_2857524_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2857555_2858260_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2858334_2859135_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2859131_2859539_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2859535_2860177_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2860169_2862191_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2863430_2864762_+	MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2864758_2865709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2867415_2867682_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2868389_2868728_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2873280_2873883_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2873979_2875269_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2875326_2876058_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2876054_2876858_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2876854_2877943_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2877939_2878869_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2879017_2880163_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2880184_2881135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2881152_2881311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2881465_2885287_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2885443_2886112_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2886116_2887790_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2887808_2889128_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2889132_2891484_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2891503_2893672_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2893668_2898858_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2898947_2899262_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2899489_2899735_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2899829_2900348_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2900447_2901653_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2901768_2903166_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2903282_2903861_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2903933_2905325_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2905492_2906443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2906723_2907344_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2907340_2907754_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2907750_2908794_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2908849_2909038_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2909047_2909812_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2909902_2910559_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2910650_2911409_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2911434_2913036_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2913236_2914241_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2914341_2914605_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2914722_2915499_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2916089_2917040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2919423_2920536_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2920592_2921543_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	2951929	2988204	4100915	transposase	Planktothrix_phage(50.0%)	35	NA	NA
WP_005012067.1|2951929_2952880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2952866_2953112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2953000_2953897_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2956174_2958400_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2958564_2959653_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2959609_2960263_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2960310_2961108_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2961639_2962590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2962670_2963819_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2963875_2964826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2964812_2965031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2964924_2965230_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2965258_2965693_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2965694_2966939_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2966935_2967646_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2967660_2968572_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2968934_2969339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2969335_2969794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2969800_2970709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2970705_2971572_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2971558_2972386_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2972396_2973524_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2974601_2975840_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2975881_2977144_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2977150_2977903_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2977954_2978140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2978415_2978880_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2978911_2979571_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2979715_2981824_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2981820_2982771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2982874_2983495_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2983598_2984339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2985473_2986598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2986643_2987012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2987253_2988204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	3395425	3440497	4100915	tRNA,transposase	Staphylococcus_phage(20.0%)	39	NA	NA
WP_005012067.1|3395425_3396376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3396362_3396539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3397142_3398237_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3398229_3399564_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3399517_3400201_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3400226_3401390_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3401386_3402388_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3402387_3403260_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3403256_3404006_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3404002_3404794_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3404790_3405930_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3406238_3406991_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3407024_3407807_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3407810_3408200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3409339_3410203_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3410238_3411327_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3411323_3412274_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3412260_3412674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3412627_3415606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3416532_3417411_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3419359_3420310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3420306_3420774_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3420816_3421587_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3421607_3422408_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3422418_3423828_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3423922_3424708_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3424947_3425964_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3426071_3426464_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3426601_3427282_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3427286_3428285_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3428353_3429304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3430808_3431510_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3431509_3432934_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3434003_3435344_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3435459_3437223_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3437334_3438213_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3438325_3439141_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3439144_3439396_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3439480_3440497_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	3458241	3510649	4100915	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3458241_3459258_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3459353_3460064_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3460060_3461050_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3461181_3462777_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3462779_3463517_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3463672_3464545_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3464813_3466034_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3466030_3466690_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3466761_3467394_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3467423_3467942_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3467952_3469062_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3469108_3469963_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3469964_3470867_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3472089_3473040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3474797_3475787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3475962_3476751_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3476747_3477779_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3477797_3478361_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3478416_3479937_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3480200_3480905_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3480912_3481650_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3481755_3482130_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3482172_3483462_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3483458_3484628_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3484624_3485464_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3485523_3486459_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3486471_3487422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3487520_3488483_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3488514_3488874_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3488998_3489901_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3489902_3491675_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3491709_3492486_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3493809_3494760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3495611_3495932_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3496004_3496886_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3497002_3497245_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3497382_3497853_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3497865_3498405_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3498439_3499981_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3500079_3500985_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3501027_3502428_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3502437_3502860_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3503042_3503927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3504002_3505079_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3505385_3507488_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3507530_3509600_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3509698_3510649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	3527767	3581568	4100915	tRNA,transposase	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3527767_3528718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3529058_3530009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530107_3531058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3531354_3531852_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3531894_3533670_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3533716_3534544_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3534550_3535285_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3536454_3537249_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3537538_3538129_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3538162_3539491_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3539565_3540711_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3540822_3541821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3541783_3542218_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3543734_3544619_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3544615_3545821_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3545817_3546678_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3546790_3548581_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3548621_3549287_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3549287_3549596_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3549761_3551048_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3552481_3553432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3555383_3556598_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3556703_3557693_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3557689_3558298_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3558310_3558940_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3558936_3559557_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3559588_3560380_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3561222_3561687_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3561705_3562632_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3562685_3563972_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3564902_3565775_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3565771_3566722_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3566820_3567771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3567875_3568106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3568232_3568622_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3568638_3571020_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3571012_3572389_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3572404_3573400_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3573418_3574411_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3574651_3575212_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3575216_3575543_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3575579_3576392_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3576402_3577485_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3577571_3578846_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3579568_3580519_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3580617_3581568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP021401	Bordetella pertussis strain J078 chromosome, complete genome	4100915	3999983	4064895	4100915	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|3999983_4000469_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4000557_4000695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4000687_4001668_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4001934_4002744_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4002783_4003464_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4003457_4003916_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4003927_4004290_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4004372_4005056_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4005111_4005420_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4005438_4005753_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4005749_4008224_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4008231_4009623_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4009619_4009805_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4009783_4010485_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4010481_4011303_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4011283_4012408_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4012400_4013420_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4013625_4014660_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4014760_4015552_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4015634_4016009_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4015986_4017396_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4017388_4018771_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4019105_4020710_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4020745_4021759_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4021769_4022696_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4023086_4024037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024206_4025433_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025632_4026499_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026491_4027454_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027554_4028505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028603_4029554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029652_4030603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030599_4032093_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032089_4035197_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035193_4038262_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038258_4039509_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039689_4040451_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040483_4041134_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041136_4041976_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042216_4042960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4043042_4043390_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043487_4044330_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044374_4045262_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045288_4045477_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045574_4047032_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047018_4048545_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048563_4049031_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4049030_4050053_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4050173_4050914_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4050968_4052069_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052070_4053261_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053380_4054397_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054715_4055387_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055383_4056292_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056503_4057151_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061002_4062079_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062089_4062899_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4062988_4063762_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4063781_4063958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4063944_4064895_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
